Wall clock time and date at job start Mon Mar 30 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47848 * 110.99917 * 2 1 4 4 C 1.55115 * 104.90763 * 146.23844 * 3 2 1 5 5 C 1.55152 * 101.55522 * 323.16115 * 4 3 2 6 6 H 1.09003 * 110.70048 * 276.96359 * 5 4 3 7 7 C 1.52998 * 110.70456 * 153.90724 * 5 4 3 8 8 H 1.09005 * 109.47163 * 302.40029 * 7 5 4 9 9 C 1.50698 * 109.47004 * 182.40248 * 7 5 4 10 10 H 1.07997 * 119.99940 * 359.97438 * 9 7 5 11 11 C 1.37880 * 119.99556 * 179.97438 * 9 7 5 12 12 N 1.31513 * 120.00624 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99460 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47153 * 89.99891 * 13 11 9 15 15 H 1.48499 * 109.47288 * 209.99848 * 13 11 9 16 16 H 1.48496 * 109.47434 * 330.00093 * 13 11 9 17 17 C 1.52998 * 109.47245 * 62.39883 * 7 5 4 18 18 C 1.53782 * 113.61779 * 300.00008 * 17 7 5 19 19 C 1.53781 * 87.08260 * 219.93457 * 18 17 7 20 20 C 1.53786 * 87.17350 * 25.39213 * 19 18 17 21 21 C 1.47440 * 110.99809 * 120.84025 * 2 1 3 22 22 H 1.08997 * 109.47587 * 299.15683 * 1 2 3 23 23 H 1.09000 * 109.47070 * 59.15738 * 1 2 3 24 24 H 1.08999 * 109.47162 * 179.15452 * 1 2 3 25 25 H 1.08994 * 110.37429 * 265.19183 * 3 2 1 26 26 H 1.09007 * 110.37354 * 27.42310 * 3 2 1 27 27 H 1.08994 * 111.15137 * 205.05294 * 4 3 2 28 28 H 1.09001 * 110.92135 * 81.16508 * 4 3 2 29 29 H 0.96995 * 120.00010 * 179.97438 * 12 11 9 30 30 H 1.08997 * 112.84789 * 71.20117 * 17 7 5 31 31 H 1.09001 * 113.61250 * 105.38275 * 18 17 7 32 32 H 1.08997 * 113.61225 * 334.48116 * 18 17 7 33 33 H 1.09002 * 113.61445 * 139.98212 * 19 18 17 34 34 H 1.09002 * 113.61408 * 270.79943 * 19 18 17 35 35 H 1.08993 * 113.61491 * 89.15923 * 20 19 18 36 36 H 1.09000 * 113.61138 * 220.06261 * 20 19 18 37 37 H 1.09000 * 109.88760 * 117.34170 * 21 2 1 38 38 H 1.08998 * 110.02413 * 356.22765 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3052 1.3063 0.8330 5 6 2.9157 0.2822 1.9315 6 1 2.3751 0.7725 2.7411 7 6 4.1568 -0.4337 2.4681 8 1 4.6756 -0.9270 1.6461 9 6 3.7417 -1.4616 3.4890 10 1 2.6973 -1.5909 3.7312 11 6 4.6955 -2.2368 4.1138 12 7 5.9674 -2.0797 3.8186 13 14 4.1810 -3.5104 5.3798 14 1 3.9281 -4.8076 4.7025 15 1 5.2642 -3.6781 6.3818 16 1 2.9418 -3.0582 6.0616 17 6 5.0912 0.5862 3.1220 18 6 5.5749 1.6841 2.1599 19 6 6.9503 1.5617 2.8367 20 6 6.5566 0.1211 3.2038 21 6 1.9973 -0.7057 1.1819 22 1 -0.3634 0.5006 0.8974 23 1 -0.3633 0.5269 -0.8823 24 1 -0.3633 -1.0275 -0.0152 25 1 2.2147 1.7039 -1.0182 26 1 1.2880 2.0596 0.4706 27 1 3.5481 2.2746 1.2704 28 1 4.1321 0.9343 0.2280 29 1 6.6384 -2.6248 4.2584 30 1 4.7036 0.9717 4.0650 31 1 5.0933 2.6487 2.3207 32 1 5.5745 1.3788 1.1135 33 1 7.7866 1.6218 2.1402 34 1 7.0714 2.2150 3.7008 35 1 6.8251 -0.6121 2.4434 36 1 6.8666 -0.1742 4.2062 37 1 2.5697 -1.5784 0.8675 38 1 1.1770 -1.0141 1.8300 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260313951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:48 Heat of formation + Delta-G solvation = 28.567065 kcal Electronic energy + Delta-G solvation = -16400.877169 eV Core-core repulsion = 14051.002774 eV Total energy + Delta-G solvation = -2349.874394 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.99316 -37.19683 -33.15962 -31.88068 -29.36298 -27.02823 -25.26881 -24.31299 -23.79329 -21.42734 -20.24717 -19.05296 -18.00904 -16.47188 -15.36539 -14.98241 -14.40736 -13.99466 -13.66241 -13.48941 -12.88721 -12.74235 -12.09583 -11.88451 -11.47271 -11.33611 -11.19090 -10.97637 -10.81246 -10.59678 -10.45234 -10.33048 -10.25956 -9.93159 -9.58516 -9.41846 -9.18559 -8.48924 -8.27979 -8.17086 -7.82931 -5.83417 -3.97643 3.31950 3.39252 3.42126 4.46457 4.53536 5.31532 5.34626 5.38767 5.54751 5.74194 5.77008 5.86330 5.88695 5.98307 6.04939 6.07153 6.12555 6.34685 6.42310 6.47693 6.57028 6.60660 6.71573 6.81998 6.83985 6.94194 7.13642 7.22103 7.41995 7.50696 7.54741 7.66539 7.82120 7.93060 8.02282 8.14412 8.49986 9.02559 9.64858 11.09037 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.011489 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.462491 B = 2436.586787 C = 3541.208360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.541 5.541 3 C 0.037 3.963 4 C -0.127 4.127 5 C -0.090 4.090 6 H 0.056 0.944 7 C 0.067 3.933 8 H 0.030 0.970 9 C -0.510 4.510 10 H 0.052 0.948 11 C 0.062 3.938 12 N -0.876 5.876 13 Si 0.884 3.116 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.077 4.077 18 C -0.147 4.147 19 C -0.181 4.181 20 C -0.051 4.051 21 C 0.056 3.944 22 H 0.021 0.979 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.257 0.743 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.148 5.798 -4.448 8.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.090 4.090 4 C -0.165 4.165 5 C -0.109 4.109 6 H 0.074 0.926 7 C 0.049 3.951 8 H 0.048 0.952 9 C -0.548 4.548 10 H 0.070 0.930 11 C -0.139 4.139 12 N -0.515 5.515 13 Si 0.713 3.287 14 H -0.209 1.209 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.096 4.096 18 C -0.184 4.184 19 C -0.219 4.219 20 C -0.089 4.089 21 C -0.071 4.071 22 H 0.040 0.960 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.834 5.439 -4.846 8.232 hybrid contribution -0.625 -0.256 1.585 1.723 sum -4.459 5.183 -3.261 7.575 Atomic orbital electron populations 1.22470 0.89017 1.01438 0.99664 1.63639 1.06828 1.14261 1.41767 1.23130 0.96699 0.89430 0.99769 1.23142 0.96099 0.99932 0.97287 1.22368 0.98505 0.94720 0.95326 0.92558 1.18692 0.89429 0.91903 0.95118 0.95206 1.21140 0.92889 1.18393 1.22396 0.93013 1.24966 0.95143 0.97023 0.96793 1.70219 0.99700 1.38684 1.42861 0.86724 0.78085 0.82276 0.81627 1.20888 1.21445 1.20267 1.22349 0.97071 0.94091 0.96097 1.23297 0.96756 0.98624 0.99727 1.23367 0.96490 1.02758 0.99331 1.22543 0.94708 0.89743 1.01952 1.22828 0.97509 0.97926 0.88835 0.96033 0.92292 0.91827 0.91390 0.94630 0.91108 0.90764 0.93287 0.92415 0.94012 0.90748 0.93871 0.92595 0.89916 0.92469 0.89982 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.12 60.06 0.55 0.88 16 2 N -0.54 -9.28 5.45 -239.39 -1.30 -10.58 16 3 C 0.04 0.59 6.73 -2.18 -0.01 0.58 16 4 C -0.13 -2.20 4.52 -24.47 -0.11 -2.31 16 5 C -0.09 -1.81 2.43 -88.79 -0.22 -2.02 16 6 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 7 C 0.07 1.58 1.24 -91.77 -0.11 1.47 16 8 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 9 C -0.51 -13.33 8.08 -34.44 -0.28 -13.61 16 10 H 0.05 1.36 7.61 -52.49 -0.40 0.96 16 11 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 12 N -0.88 -23.46 8.19 55.43 0.45 -23.01 16 13 Si 0.88 20.93 29.54 -169.99 -5.02 15.90 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 C -0.08 -1.73 2.97 -89.71 -0.27 -2.00 16 18 C -0.15 -2.80 5.26 -25.92 -0.14 -2.94 16 19 C -0.18 -3.50 8.08 -25.92 -0.21 -3.71 16 20 C -0.05 -1.17 5.01 -25.82 -0.13 -1.30 16 21 C 0.06 1.09 5.86 -2.84 -0.02 1.07 16 22 H 0.02 0.30 8.10 -51.93 -0.42 -0.12 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.53 7.78 -51.93 -0.40 0.13 16 27 H 0.07 1.16 6.20 -51.93 -0.32 0.83 16 28 H 0.07 1.34 6.53 -51.93 -0.34 1.00 16 29 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.04 0.73 7.22 -51.93 -0.37 0.36 16 32 H 0.07 1.39 5.88 -51.93 -0.31 1.09 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.08 2.05 7.12 -51.93 -0.37 1.68 16 36 H 0.06 1.40 7.13 -51.93 -0.37 1.03 16 37 H 0.08 1.75 7.80 -51.93 -0.41 1.35 16 38 H 0.04 0.86 7.59 -51.93 -0.39 0.46 16 LS Contribution 281.28 15.07 4.24 4.24 Total: -1.00 -25.98 281.28 -9.28 -35.26 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.61 Total: 0.53 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -1.04 Total: -22.34 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: -0.85 Total: -33.59 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -25.98 -9.28 -35.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.824 kcal (2) G-P(sol) polarization free energy of solvation -25.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds