Wall clock time and date at job start Mon Mar 30 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47848 * 110.99917 * 2 1 4 4 C 1.55115 * 104.90763 * 146.23844 * 3 2 1 5 5 C 1.55152 * 101.55522 * 323.16115 * 4 3 2 6 6 H 1.09003 * 110.70048 * 276.96359 * 5 4 3 7 7 C 1.52998 * 110.70456 * 153.90724 * 5 4 3 8 8 H 1.09005 * 109.47163 * 302.40029 * 7 5 4 9 9 C 1.50698 * 109.47004 * 182.40248 * 7 5 4 10 10 H 1.07997 * 119.99940 * 359.97438 * 9 7 5 11 11 C 1.37880 * 119.99556 * 179.97438 * 9 7 5 12 12 N 1.31513 * 120.00624 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99460 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47153 * 89.99891 * 13 11 9 15 15 H 1.48499 * 109.47288 * 209.99848 * 13 11 9 16 16 H 1.48496 * 109.47434 * 330.00093 * 13 11 9 17 17 C 1.52998 * 109.47245 * 62.39883 * 7 5 4 18 18 C 1.53782 * 113.61779 * 300.00008 * 17 7 5 19 19 C 1.53781 * 87.08260 * 219.93457 * 18 17 7 20 20 C 1.53786 * 87.17350 * 25.39213 * 19 18 17 21 21 C 1.47440 * 110.99809 * 120.84025 * 2 1 3 22 22 H 1.08997 * 109.47587 * 299.15683 * 1 2 3 23 23 H 1.09000 * 109.47070 * 59.15738 * 1 2 3 24 24 H 1.08999 * 109.47162 * 179.15452 * 1 2 3 25 25 H 1.08994 * 110.37429 * 265.19183 * 3 2 1 26 26 H 1.09007 * 110.37354 * 27.42310 * 3 2 1 27 27 H 1.08994 * 111.15137 * 205.05294 * 4 3 2 28 28 H 1.09001 * 110.92135 * 81.16508 * 4 3 2 29 29 H 0.96995 * 120.00010 * 179.97438 * 12 11 9 30 30 H 1.08997 * 112.84789 * 71.20117 * 17 7 5 31 31 H 1.09001 * 113.61250 * 105.38275 * 18 17 7 32 32 H 1.08997 * 113.61225 * 334.48116 * 18 17 7 33 33 H 1.09002 * 113.61445 * 139.98212 * 19 18 17 34 34 H 1.09002 * 113.61408 * 270.79943 * 19 18 17 35 35 H 1.08993 * 113.61491 * 89.15923 * 20 19 18 36 36 H 1.09000 * 113.61138 * 220.06261 * 20 19 18 37 37 H 1.09000 * 109.88760 * 117.34170 * 21 2 1 38 38 H 1.08998 * 110.02413 * 356.22765 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3052 1.3063 0.8330 5 6 2.9157 0.2822 1.9315 6 1 2.3751 0.7725 2.7411 7 6 4.1568 -0.4337 2.4681 8 1 4.6756 -0.9270 1.6461 9 6 3.7417 -1.4616 3.4890 10 1 2.6973 -1.5909 3.7312 11 6 4.6955 -2.2368 4.1138 12 7 5.9674 -2.0797 3.8186 13 14 4.1810 -3.5104 5.3798 14 1 3.9281 -4.8076 4.7025 15 1 5.2642 -3.6781 6.3818 16 1 2.9418 -3.0582 6.0616 17 6 5.0912 0.5862 3.1220 18 6 5.5749 1.6841 2.1599 19 6 6.9503 1.5617 2.8367 20 6 6.5566 0.1211 3.2038 21 6 1.9973 -0.7057 1.1819 22 1 -0.3634 0.5006 0.8974 23 1 -0.3633 0.5269 -0.8823 24 1 -0.3633 -1.0275 -0.0152 25 1 2.2147 1.7039 -1.0182 26 1 1.2880 2.0596 0.4706 27 1 3.5481 2.2746 1.2704 28 1 4.1321 0.9343 0.2280 29 1 6.6384 -2.6248 4.2584 30 1 4.7036 0.9717 4.0650 31 1 5.0933 2.6487 2.3207 32 1 5.5745 1.3788 1.1135 33 1 7.7866 1.6218 2.1402 34 1 7.0714 2.2150 3.7008 35 1 6.8251 -0.6121 2.4434 36 1 6.8666 -0.1742 4.2062 37 1 2.5697 -1.5784 0.8675 38 1 1.1770 -1.0141 1.8300 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260313951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:48 Heat of formation + Delta-G solvation = 14.413595 kcal Electronic energy + Delta-G solvation = -16401.490909 eV Core-core repulsion = 14051.002774 eV Total energy + Delta-G solvation = -2350.488135 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57027 -38.75394 -35.01062 -33.54033 -30.90584 -28.60937 -26.82213 -26.14501 -25.32623 -23.09570 -21.63536 -20.76412 -19.69716 -18.42063 -16.85206 -16.62924 -16.15012 -15.63259 -15.14877 -14.91309 -14.56863 -14.20533 -13.72807 -13.44349 -13.13540 -12.97886 -12.81048 -12.62963 -12.33937 -12.29866 -12.20535 -11.97335 -11.78883 -11.67759 -11.35147 -11.15231 -10.88963 -10.34382 -10.14061 -10.03265 -9.17667 -7.86671 -6.06732 1.40031 1.42918 1.50056 2.47291 3.21389 3.28566 3.94384 3.98690 4.08855 4.26599 4.33059 4.41032 4.50417 4.55587 4.61377 4.70732 4.78650 4.84607 4.98443 5.00672 5.02848 5.10975 5.15669 5.21886 5.29917 5.33851 5.43298 5.55420 5.58240 5.88278 5.93521 5.93714 6.07862 6.13994 6.25033 6.27707 6.52706 6.98973 7.56696 9.02294 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.011489 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.462491 B = 2436.586787 C = 3541.208360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.552 5.552 3 C 0.041 3.959 4 C -0.119 4.119 5 C -0.089 4.089 6 H 0.050 0.950 7 C 0.072 3.928 8 H -0.004 1.004 9 C -0.526 4.526 10 H 0.043 0.957 11 C 0.018 3.982 12 N -0.890 5.890 13 Si 0.937 3.063 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.085 4.085 18 C -0.128 4.128 19 C -0.166 4.166 20 C -0.055 4.055 21 C 0.064 3.936 22 H 0.024 0.976 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.254 0.746 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.031 0.969 37 H 0.052 0.948 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 7.499 -5.169 10.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.276 5.276 3 C -0.086 4.086 4 C -0.157 4.157 5 C -0.108 4.108 6 H 0.068 0.932 7 C 0.053 3.947 8 H 0.014 0.986 9 C -0.565 4.565 10 H 0.061 0.939 11 C -0.181 4.181 12 N -0.528 5.528 13 Si 0.764 3.236 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.104 4.104 18 C -0.165 4.165 19 C -0.204 4.204 20 C -0.093 4.093 21 C -0.064 4.064 22 H 0.042 0.958 23 H 0.101 0.899 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.614 7.149 -5.574 10.172 hybrid contribution -0.396 -0.834 1.806 2.028 sum -5.010 6.315 -3.769 8.898 Atomic orbital electron populations 1.22547 0.87051 1.02121 1.00916 1.63602 1.08753 1.15155 1.40130 1.23177 0.95839 0.88815 1.00747 1.23061 0.96889 0.99449 0.96256 1.22238 0.97030 0.95478 0.96086 0.93179 1.18551 0.90877 0.91878 0.93417 0.98590 1.21429 0.92463 1.19460 1.23125 0.93892 1.25587 0.95387 0.98675 0.98463 1.70399 1.00101 1.39039 1.43299 0.85893 0.77668 0.80278 0.79714 1.20781 1.21297 1.20083 1.22287 0.96363 0.95321 0.96393 1.23153 0.96069 0.98261 0.99001 1.23251 0.97340 0.99658 1.00108 1.22326 0.95667 0.91677 0.99678 1.22589 0.96970 0.97206 0.89608 0.95759 0.89860 0.91652 0.89355 0.93104 0.89519 0.91616 0.93594 0.93978 0.91494 0.90255 0.92121 0.91206 0.92528 0.95035 0.92926 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.12 127.69 1.16 1.74 16 2 N -0.55 -17.96 5.45 -911.28 -4.96 -22.93 16 3 C 0.04 1.18 6.73 86.85 0.58 1.76 16 4 C -0.12 -3.87 4.52 32.06 0.14 -3.72 16 5 C -0.09 -3.56 2.43 -9.61 -0.02 -3.58 16 6 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 7 C 0.07 3.44 1.24 -11.54 -0.01 3.43 16 8 H 0.00 -0.22 7.93 -2.38 -0.02 -0.24 16 9 C -0.53 -28.35 8.08 25.60 0.21 -28.14 16 10 H 0.04 2.33 7.61 -2.91 -0.02 2.30 16 11 C 0.02 1.00 5.30 84.66 0.45 1.44 16 12 N -0.89 -49.21 8.19 21.45 0.18 -49.03 16 13 Si 0.94 43.79 29.54 68.60 2.03 45.81 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 15 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 17 C -0.08 -3.81 2.97 -10.21 -0.03 -3.84 16 18 C -0.13 -4.60 5.26 31.12 0.16 -4.43 16 19 C -0.17 -6.07 8.08 31.12 0.25 -5.82 16 20 C -0.06 -2.55 5.01 31.18 0.16 -2.40 16 21 C 0.06 2.49 5.86 86.65 0.51 3.00 16 22 H 0.02 0.62 8.10 -2.39 -0.02 0.60 16 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.05 1.31 7.78 -2.38 -0.02 1.29 16 27 H 0.09 2.54 6.20 -2.39 -0.01 2.52 16 28 H 0.07 2.26 6.53 -2.39 -0.02 2.24 16 29 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.10 7.22 -2.39 -0.02 2.09 16 32 H 0.08 2.80 5.88 -2.39 -0.01 2.79 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.06 2.90 7.12 -2.39 -0.02 2.88 16 36 H 0.03 1.58 7.13 -2.39 -0.02 1.56 16 37 H 0.05 2.33 7.80 -2.39 -0.02 2.31 16 38 H 0.04 1.55 7.59 -2.39 -0.02 1.53 16 Total: -1.00 -56.66 281.28 1.80 -54.85 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.00 Total: 11.85 kcal Atomic # 6 Polarization: -44.12 SS G_CDS: 3.56 Total: -40.56 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -4.79 Total: -71.96 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -56.66 1.80 -54.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.267 kcal (2) G-P(sol) polarization free energy of solvation -56.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds