Wall clock time and date at job start Mon Mar 30 2020 03:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.45754 * 1 3 3 C 1.47923 * 111.61601 * 2 1 4 4 C 1.54680 * 106.47477 * 135.68587 * 3 2 1 5 5 C 1.54987 * 102.47400 * 332.92434 * 4 3 2 6 6 H 1.08897 * 111.03549 * 153.91439 * 5 4 3 7 7 C 1.49990 * 110.65864 * 277.62607 * 5 4 3 8 8 H 1.08013 * 119.99754 * 112.97100 * 7 5 4 9 9 C 1.37873 * 120.00491 * 292.97047 * 7 5 4 10 10 N 1.31517 * 119.99708 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 120.00288 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47142 * 60.00596 * 11 9 7 13 13 H 1.48497 * 109.47251 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47448 * 300.00630 * 11 9 7 15 15 C 1.46602 * 115.58368 * 126.00427 * 2 1 3 16 16 C 1.53568 * 109.07594 * 135.59737 * 15 2 1 17 17 C 1.52495 * 110.55901 * 287.52269 * 16 15 2 18 18 C 1.53298 * 108.84832 * 298.35335 * 17 16 15 19 19 C 1.53070 * 108.22552 * 63.56410 * 18 17 16 20 20 C 1.51449 * 115.02369 * 10.79975 * 15 2 1 21 21 H 1.08998 * 109.47480 * 287.26709 * 1 2 3 22 22 H 1.09000 * 109.47312 * 47.27119 * 1 2 3 23 23 H 1.09004 * 109.46714 * 167.26476 * 1 2 3 24 24 H 1.09959 * 111.18203 * 15.07462 * 3 2 1 25 25 H 1.10138 * 110.39473 * 255.24135 * 3 2 1 26 26 H 1.08725 * 110.84907 * 213.97558 * 4 3 2 27 27 H 1.09199 * 110.87708 * 90.69855 * 4 3 2 28 28 H 0.97000 * 119.99463 * 179.97438 * 10 9 7 29 29 H 1.08905 * 109.06386 * 167.20459 * 16 15 2 30 30 H 1.09272 * 108.40933 * 47.88558 * 16 15 2 31 31 H 1.09368 * 109.81425 * 57.82336 * 17 16 15 32 32 H 1.08869 * 110.43336 * 177.86717 * 17 16 15 33 33 H 1.09017 * 109.64015 * 183.31593 * 18 17 16 34 34 H 1.08719 * 109.68812 * 304.44429 * 18 17 16 35 35 H 1.09437 * 109.19358 * 181.19702 * 19 18 17 36 36 H 1.08955 * 109.74198 * 62.67541 * 19 18 17 37 37 H 1.10548 * 108.31432 * 191.11689 * 20 15 2 38 38 H 1.09078 * 112.47386 * 307.77716 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4575 0.0000 0.0000 3 6 2.0025 1.3752 0.0000 4 6 3.1507 1.3920 1.0362 5 6 2.7301 0.2710 2.0203 6 1 3.5979 -0.1545 2.5221 7 6 1.7335 0.7869 3.0154 8 1 0.7175 0.4205 3.0018 9 6 2.1142 1.7287 3.9476 10 7 3.3512 2.1752 3.9638 11 14 0.8728 2.3717 5.1864 12 1 0.3606 1.2436 6.0051 13 1 1.5273 3.3687 6.0712 14 1 -0.2566 3.0144 4.4677 15 6 2.0906 -0.7773 1.0697 16 6 3.2426 -1.6017 0.4767 17 6 2.7001 -2.7566 -0.3584 18 6 1.8779 -3.6798 0.5481 19 6 0.6762 -2.8898 1.0723 20 6 1.1514 -1.6672 1.8569 21 1 -0.3634 0.3050 0.9813 22 1 -0.3634 0.6973 -0.7549 23 1 -0.3633 -1.0024 -0.2266 24 1 1.2284 2.1093 0.2667 25 1 2.3883 1.6351 -0.9983 26 1 3.2079 2.3565 1.5348 27 1 4.1043 1.1457 0.5645 28 1 3.6189 2.8381 4.6194 29 1 3.8515 -1.9972 1.2884 30 1 3.8495 -0.9448 -0.1512 31 1 2.0576 -2.3690 -1.1540 32 1 3.5177 -3.3172 -0.8084 33 1 1.5325 -4.5416 -0.0233 34 1 2.4867 -4.0057 1.3878 35 1 0.0890 -3.5285 1.7393 36 1 0.0408 -2.5904 0.2393 37 1 1.6906 -2.0402 2.7469 38 1 0.2852 -1.1251 2.2384 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260379509.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:18 Heat of formation + Delta-G solvation = -15.105232 kcal Electronic energy + Delta-G solvation = -16918.687618 eV Core-core repulsion = 14566.919451 eV Total energy + Delta-G solvation = -2351.768167 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.46323 -35.41642 -32.91725 -31.01729 -30.03276 -29.10593 -26.13480 -24.02727 -23.31853 -21.87424 -20.43530 -19.37856 -17.73262 -16.20549 -15.43582 -14.46649 -14.30710 -14.08963 -13.44531 -13.28717 -13.11754 -12.39607 -12.17139 -11.98974 -11.62150 -11.49582 -11.05862 -10.98821 -10.84933 -10.66787 -10.58965 -10.28585 -10.12700 -9.94083 -9.86623 -9.64807 -9.54035 -8.85236 -8.60435 -8.35109 -7.11670 -6.01297 -4.04682 3.29050 3.34412 3.36634 4.42072 4.84480 5.30688 5.35200 5.37795 5.45759 5.83531 5.88555 5.98674 6.04472 6.08900 6.17316 6.22001 6.24343 6.31449 6.39858 6.47766 6.54407 6.59878 6.60964 6.66831 6.82730 6.86215 6.96345 7.03213 7.13440 7.23684 7.35558 7.63017 7.82631 7.95826 8.09688 8.32864 8.48079 8.98220 9.59345 11.07111 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.010534 C = 0.009939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.752116 B = 2657.509999 C = 2816.446037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.064 3.936 4 C -0.120 4.120 5 C 0.041 3.959 6 H 0.033 0.967 7 C -0.508 4.508 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.888 5.888 11 Si 0.885 3.115 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.279 1.279 15 C 0.124 3.876 16 C -0.096 4.096 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.099 4.099 21 H 0.028 0.972 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 -6.562 -6.512 9.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.267 5.267 3 C -0.063 4.063 4 C -0.158 4.158 5 C 0.021 3.979 6 H 0.051 0.949 7 C -0.546 4.546 8 H 0.075 0.925 9 C -0.138 4.138 10 N -0.526 5.526 11 Si 0.713 3.287 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.204 1.204 15 C 0.035 3.965 16 C -0.134 4.134 17 C -0.148 4.148 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.137 4.137 21 H 0.046 0.954 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.755 -6.655 -6.814 9.915 hybrid contribution -0.906 0.901 1.523 1.989 sum -3.661 -5.754 -5.290 8.631 Atomic orbital electron populations 1.22064 0.88856 1.00468 0.99600 1.60988 1.05910 1.12598 1.47167 1.22981 0.97259 0.88495 0.97597 1.22592 0.94250 1.03098 0.95885 1.20080 0.95649 0.90242 0.91907 0.94861 1.20952 0.96575 1.22856 1.14175 0.92538 1.24950 0.94992 0.96546 0.97336 1.69953 1.16506 1.30440 1.35749 0.86779 0.81654 0.78746 0.81541 1.20332 1.21349 1.20448 1.21200 0.92779 0.93346 0.89215 1.21590 0.97503 0.95851 0.98436 1.21417 0.98784 0.96372 0.98272 1.21565 0.97394 0.97355 0.99041 1.21710 0.97195 0.97246 0.99607 1.21310 0.99863 0.94875 0.97686 0.95365 0.93253 0.92447 0.94364 0.93668 0.90292 0.94960 0.93052 0.92842 0.92376 0.91721 0.93617 0.93188 0.92508 0.93616 0.92281 0.92370 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 8.52 59.44 0.51 1.20 16 2 N -0.54 -10.64 4.43 -224.65 -1.00 -11.64 16 3 C 0.06 1.33 6.60 -2.38 -0.02 1.31 16 4 C -0.12 -2.79 5.82 -24.80 -0.14 -2.94 16 5 C 0.04 0.99 2.02 -89.85 -0.18 0.81 16 6 H 0.03 0.90 7.71 -51.99 -0.40 0.50 16 7 C -0.51 -13.41 7.74 -34.78 -0.27 -13.67 16 8 H 0.06 1.49 5.42 -52.48 -0.28 1.20 16 9 C 0.06 1.73 5.21 -17.82 -0.09 1.63 16 10 N -0.89 -25.24 12.15 55.43 0.67 -24.56 16 11 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.12 2.50 0.52 -131.04 -0.07 2.44 16 16 C -0.10 -1.76 4.50 -26.70 -0.12 -1.88 16 17 C -0.11 -1.74 5.84 -26.84 -0.16 -1.89 16 18 C -0.12 -1.70 6.00 -26.54 -0.16 -1.86 16 19 C -0.12 -1.90 5.75 -26.77 -0.15 -2.05 16 20 C -0.10 -1.91 2.98 -27.59 -0.08 -1.99 16 21 H 0.03 0.55 6.78 -51.93 -0.35 0.20 16 22 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 23 H 0.06 0.93 5.54 -51.93 -0.29 0.64 16 24 H 0.04 0.82 7.82 -51.38 -0.40 0.41 16 25 H 0.05 0.86 8.24 -51.28 -0.42 0.44 16 26 H 0.08 2.06 6.84 -52.08 -0.36 1.70 16 27 H 0.03 0.72 7.67 -51.82 -0.40 0.32 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.05 1.00 7.88 -51.98 -0.41 0.59 16 30 H 0.06 1.10 7.36 -51.78 -0.38 0.72 16 31 H 0.06 1.05 8.05 -51.72 -0.42 0.63 16 32 H 0.05 0.64 8.13 -52.00 -0.42 0.22 16 33 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.06 0.84 8.12 -52.09 -0.42 0.41 16 35 H 0.05 0.66 8.18 -51.68 -0.42 0.24 16 36 H 0.06 0.91 5.79 -51.95 -0.30 0.61 16 37 H 0.06 1.18 8.20 -51.04 -0.42 0.76 16 38 H 0.07 1.37 5.18 -51.89 -0.27 1.10 16 LS Contribution 276.31 15.07 4.16 4.16 Total: -1.00 -27.16 276.31 -8.46 -35.62 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.34 Total: -0.85 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -0.94 Total: -18.90 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.32 Total: -36.20 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.16 -8.46 -35.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379509.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.513 kcal (2) G-P(sol) polarization free energy of solvation -27.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds