Wall clock time and date at job start Mon Mar 30 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46847 * 110.99812 * 2 1 4 4 C 1.53034 * 109.52486 * 174.15668 * 3 2 1 5 5 C 1.53126 * 109.27454 * 59.18079 * 4 3 2 6 6 C 1.53000 * 109.52038 * 182.43766 * 5 4 3 7 7 H 1.09010 * 115.54759 * 85.58036 * 6 5 4 8 8 C 1.52995 * 117.49868 * 231.25250 * 6 5 4 9 9 C 1.52998 * 117.50446 * 299.91402 * 6 5 4 10 10 H 1.09006 * 117.49115 * 0.02562 * 9 6 5 11 11 C 1.52993 * 117.50080 * 145.01749 * 9 6 5 12 12 C 1.50708 * 109.47169 * 185.00077 * 11 9 6 13 13 H 1.08001 * 119.99656 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00120 * 180.02562 * 12 11 9 15 15 N 1.31509 * 119.99739 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 119.99986 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47329 * 59.99866 * 16 14 12 18 18 H 1.48497 * 109.47379 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47159 * 299.99968 * 16 14 12 20 20 C 1.53114 * 109.16071 * 302.34640 * 5 4 3 21 21 C 1.46848 * 111.00135 * 235.79074 * 2 1 3 22 22 H 1.09000 * 109.46775 * 184.20456 * 1 2 3 23 23 H 1.08995 * 109.47474 * 304.20815 * 1 2 3 24 24 H 1.09001 * 109.47046 * 64.21374 * 1 2 3 25 25 H 1.08999 * 109.46634 * 54.14179 * 3 2 1 26 26 H 1.09006 * 109.46422 * 294.18075 * 3 2 1 27 27 H 1.08997 * 109.50792 * 299.24185 * 4 3 2 28 28 H 1.09006 * 109.50471 * 179.11839 * 4 3 2 29 29 H 1.09001 * 109.52438 * 62.24983 * 5 4 3 30 30 H 1.09010 * 117.49447 * 214.98172 * 8 6 5 31 31 H 1.08997 * 117.50226 * 0.02562 * 8 6 5 32 32 H 1.09001 * 109.47374 * 305.00169 * 11 9 6 33 33 H 1.09005 * 109.47239 * 65.00578 * 11 9 6 34 34 H 0.97009 * 120.00243 * 180.02562 * 15 14 12 35 35 H 1.08994 * 109.50522 * 177.59764 * 20 5 4 36 36 H 1.09010 * 109.49966 * 297.67525 * 20 5 4 37 37 H 1.09000 * 109.46321 * 65.82514 * 21 2 1 38 38 H 1.08999 * 109.45108 * 305.84385 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5371 -1.0143 6 6 5.6361 0.4452 -0.8404 7 1 5.9885 -0.3716 -0.2103 8 6 6.5092 0.8462 -2.0311 9 6 6.4238 1.7563 -0.8033 10 1 5.8608 2.6845 -0.9024 11 6 7.6459 1.8205 0.1148 12 6 8.2084 3.2187 0.1054 13 1 7.7407 3.9848 -0.4951 14 6 9.3201 3.5196 0.8633 15 7 9.8893 2.5867 1.5949 16 14 10.0169 5.2527 0.8522 17 1 8.9846 6.2044 1.3358 18 1 11.2032 5.3151 1.7432 19 1 10.4165 5.6166 -0.5310 20 6 3.5182 -0.8713 -1.0208 21 6 1.9953 -0.7708 -1.1337 22 1 -0.3633 -1.0249 0.0753 23 1 -0.3634 0.5777 0.8498 24 1 -0.3633 0.4471 -0.9253 25 1 1.5634 1.9258 0.8329 26 1 1.7324 1.8609 -0.9376 27 1 3.7814 0.8569 1.0907 28 1 3.9099 2.3514 0.1311 29 1 3.8887 1.0355 -1.9560 30 1 7.4362 0.2935 -2.1842 31 1 6.0027 1.1759 -2.9382 32 1 7.3521 1.5540 1.1301 33 1 8.4037 1.1217 -0.2395 34 1 10.6713 2.7985 2.1286 35 1 3.9100 -1.4301 -1.8707 36 1 3.7820 -1.3837 -0.0955 37 1 1.7326 -0.2708 -2.0660 38 1 1.5636 -1.7715 -1.1240 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260384235.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:39 Heat of formation + Delta-G solvation = -15.786758 kcal Electronic energy + Delta-G solvation = -15358.250358 eV Core-core repulsion = 13006.452638 eV Total energy + Delta-G solvation = -2351.797720 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.36568 -38.30554 -35.12857 -33.82806 -31.75952 -30.29783 -27.63014 -25.34725 -24.07215 -24.02244 -21.72241 -20.87733 -20.59801 -18.46935 -16.96246 -16.52351 -15.98275 -15.60112 -15.56282 -15.12562 -14.59984 -14.34319 -14.24137 -13.75931 -13.33202 -13.27808 -13.02467 -12.76728 -12.63748 -12.48931 -12.40350 -12.08323 -11.82752 -11.65785 -11.43248 -11.36715 -11.23751 -10.75117 -10.43538 -10.18932 -9.24034 -8.18888 -6.29856 1.39719 1.43241 1.51142 2.41339 3.00677 3.04705 3.15998 3.69524 3.90078 3.99170 4.18997 4.22884 4.33243 4.36591 4.48197 4.55173 4.62740 4.65018 4.76130 4.77358 4.84205 4.92886 4.93971 5.03692 5.06511 5.11733 5.24749 5.31361 5.34239 5.42994 5.54274 5.57966 5.68930 5.84416 6.15972 6.20385 6.27097 6.85146 7.38775 8.92760 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.046281 B = 0.005214 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.853495 B = 5369.084985 C = 5656.896163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.561 5.561 3 C 0.062 3.938 4 C -0.109 4.109 5 C -0.046 4.046 6 C -0.141 4.141 7 H 0.085 0.915 8 C -0.170 4.170 9 C -0.137 4.137 10 H 0.089 0.911 11 C 0.055 3.945 12 C -0.537 4.537 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.105 4.105 21 C 0.059 3.941 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.028 0.972 25 H 0.078 0.922 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.105 0.895 32 H -0.011 1.011 33 H -0.011 1.011 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.036 0.964 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.620 -5.036 -6.178 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.286 5.286 3 C -0.066 4.066 4 C -0.147 4.147 5 C -0.065 4.065 6 C -0.159 4.159 7 H 0.104 0.896 8 C -0.207 4.207 9 C -0.155 4.155 10 H 0.107 0.893 11 C 0.018 3.982 12 C -0.575 4.575 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.143 4.143 21 C -0.068 4.068 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.007 0.993 33 H 0.008 0.992 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.337 -5.298 -5.634 18.983 hybrid contribution 0.673 1.123 -0.347 1.354 sum -16.664 -4.174 -5.981 18.190 Atomic orbital electron populations 1.22391 0.86091 1.02919 1.00814 1.61924 1.08706 1.13864 1.44119 1.22043 0.94654 0.89231 1.00624 1.21557 0.94550 0.99932 0.98658 1.20696 0.90746 0.96830 0.98187 1.22409 0.93522 0.98433 1.01515 0.89647 1.23120 1.01146 1.03711 0.92688 1.22378 0.99279 0.93663 1.00188 0.89263 1.18548 0.91266 0.95532 0.92865 1.21633 1.12385 0.96750 1.26715 0.92265 1.25992 0.97234 1.01771 0.94892 1.70099 1.22325 1.35319 1.29832 0.85489 0.77815 0.79296 0.78382 1.19127 1.20779 1.19156 1.21580 0.94449 0.95801 1.02433 1.22104 0.94967 0.98638 0.91134 0.90432 0.91009 0.95322 0.90333 0.94634 0.92726 0.92327 0.91265 0.90305 0.87679 0.99294 0.99223 0.92786 0.90376 0.92157 0.94595 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.59 127.69 1.22 1.64 16 2 N -0.56 -12.31 4.91 -922.58 -4.53 -16.84 16 3 C 0.06 1.45 5.46 86.32 0.47 1.93 16 4 C -0.11 -3.14 5.18 30.65 0.16 -2.98 16 5 C -0.05 -1.29 2.41 -10.71 -0.03 -1.31 16 6 C -0.14 -4.90 4.87 -10.80 -0.05 -4.95 16 7 H 0.09 3.17 8.11 -2.38 -0.02 3.15 16 8 C -0.17 -6.06 9.83 30.62 0.30 -5.76 16 9 C -0.14 -5.89 4.94 -10.77 -0.05 -5.94 16 10 H 0.09 3.81 7.50 -2.38 -0.02 3.79 16 11 C 0.05 3.02 5.25 29.85 0.16 3.18 16 12 C -0.54 -31.52 9.08 25.60 0.23 -31.29 16 13 H 0.06 3.33 7.68 -2.91 -0.02 3.31 16 14 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 15 N -0.94 -58.35 13.29 21.45 0.28 -58.06 16 16 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 C -0.10 -2.46 5.36 30.64 0.16 -2.30 16 21 C 0.06 1.19 5.46 86.32 0.47 1.66 16 22 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 24 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 26 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.82 7.39 -2.38 -0.02 1.81 16 29 H 0.07 1.84 7.91 -2.39 -0.02 1.82 16 30 H 0.08 2.93 8.03 -2.38 -0.02 2.91 16 31 H 0.10 3.18 8.05 -2.39 -0.02 3.16 16 32 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H -0.01 -0.63 7.88 -2.38 -0.02 -0.65 16 34 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 1.48 8.12 -2.39 -0.02 1.46 16 Total: -1.00 -65.05 302.25 2.28 -62.77 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.98 Total: 10.74 kcal Atomic # 6 Polarization: -49.25 SS G_CDS: 3.51 Total: -45.74 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -4.25 Total: -74.91 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.05 2.28 -62.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384235.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.987 kcal (2) G-P(sol) polarization free energy of solvation -65.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds