Wall clock time and date at job start Mon Mar 30 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46849 * 111.00130 * 2 1 4 4 C 1.53042 * 109.52452 * 185.83933 * 3 2 1 5 5 C 1.53119 * 109.27628 * 300.82310 * 4 3 2 6 6 C 1.53000 * 109.52237 * 177.56071 * 5 4 3 7 7 H 1.08998 * 115.56184 * 208.24835 * 6 5 4 8 8 C 1.53002 * 117.49734 * 353.93690 * 6 5 4 9 9 C 1.52994 * 60.00114 * 107.49009 * 8 6 5 10 10 H 1.09005 * 117.50091 * 107.51132 * 9 8 6 11 11 C 1.52995 * 117.50062 * 252.50814 * 9 8 6 12 12 C 1.50694 * 109.47576 * 187.55286 * 11 9 8 13 13 H 1.08005 * 120.00139 * 0.02562 * 12 11 9 14 14 C 1.37879 * 120.00233 * 180.02562 * 12 11 9 15 15 N 1.31515 * 119.99882 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00166 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47126 * 89.99809 * 16 14 12 18 18 H 1.48499 * 109.47646 * 210.00051 * 16 14 12 19 19 H 1.48507 * 109.47256 * 330.00112 * 16 14 12 20 20 C 1.53119 * 109.21477 * 57.62040 * 5 4 3 21 21 C 1.46844 * 111.00177 * 124.20714 * 2 1 3 22 22 H 1.09005 * 109.46807 * 59.99831 * 1 2 3 23 23 H 1.09000 * 109.47215 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47065 * 300.00133 * 1 2 3 25 25 H 1.09004 * 109.46236 * 65.82569 * 3 2 1 26 26 H 1.08997 * 109.45294 * 305.84967 * 3 2 1 27 27 H 1.08999 * 109.50515 * 180.87899 * 4 3 2 28 28 H 1.08998 * 109.53464 * 60.77944 * 4 3 2 29 29 H 1.09004 * 109.52254 * 297.68350 * 5 4 3 30 30 H 1.08996 * 117.49897 * 0.02562 * 8 6 5 31 31 H 1.08998 * 117.49860 * 214.98422 * 8 6 5 32 32 H 1.09004 * 109.47505 * 307.55892 * 11 9 8 33 33 H 1.09005 * 109.47226 * 67.55219 * 11 9 8 34 34 H 0.97001 * 119.99820 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.50109 * 62.32335 * 20 5 4 36 36 H 1.09006 * 109.50088 * 182.43726 * 20 5 4 37 37 H 1.09000 * 109.46592 * 294.18017 * 21 2 1 38 38 H 1.09007 * 109.46170 * 54.15678 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1468 5 6 4.1188 0.5369 1.0144 6 6 5.6361 0.4449 0.8405 7 1 6.1067 -0.4368 1.2756 8 6 6.2336 0.9980 -0.4548 9 6 6.4302 1.7525 0.8615 10 1 7.4234 1.7314 1.3103 11 6 5.6463 3.0521 1.0549 12 6 6.1093 3.7353 2.3157 13 1 6.8855 3.2876 2.9187 14 6 5.5421 4.9320 2.6995 15 7 5.9466 5.5284 3.7996 16 14 4.1992 5.7060 1.6571 17 1 2.8737 5.2163 2.1140 18 1 4.2553 7.1835 1.7947 19 1 4.4007 5.3334 0.2337 20 6 3.5183 -0.8716 1.0224 21 6 1.9953 -0.7707 1.1337 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.7325 1.8608 0.9376 26 1 1.5634 1.9255 -0.8331 27 1 3.9100 2.3512 -0.1310 28 1 3.7820 0.8571 -1.0906 29 1 3.8897 1.0360 1.9559 30 1 5.5458 1.4279 -1.1830 31 1 7.0972 0.4802 -0.8720 32 1 5.8162 3.7093 0.2020 33 1 4.5827 2.8266 1.1334 34 1 5.5478 6.3705 4.0695 35 1 3.7815 -1.3847 0.0975 36 1 3.9102 -1.4294 1.8730 37 1 1.7324 -0.2708 2.0660 38 1 1.5636 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260384241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:42 Heat of formation + Delta-G solvation = 0.119901 kcal Electronic energy + Delta-G solvation = -16042.763334 eV Core-core repulsion = 13691.655378 eV Total energy + Delta-G solvation = -2351.107956 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76507 -38.31930 -34.94770 -33.64523 -31.83139 -30.90236 -27.74160 -25.10665 -24.50600 -23.95780 -22.04186 -20.54897 -19.86762 -18.96709 -16.95195 -16.39103 -16.09895 -15.82005 -15.71849 -15.50452 -14.81638 -14.39028 -14.28307 -13.69729 -13.50484 -13.35861 -13.06038 -12.66172 -12.55275 -12.35439 -12.17571 -11.94064 -11.78203 -11.73615 -11.65962 -11.16269 -10.99249 -10.78712 -10.55839 -10.20338 -9.30359 -8.29470 -6.31022 1.31266 1.33818 1.45529 2.34123 2.98532 3.02210 3.12901 3.75621 3.87699 3.99214 4.16177 4.21410 4.29415 4.34280 4.41772 4.58673 4.62759 4.64623 4.76057 4.82820 4.84404 4.87562 4.92874 5.00618 5.10804 5.13201 5.17732 5.20616 5.32359 5.43342 5.49039 5.57746 5.66225 5.70672 6.10461 6.16798 6.31557 6.76062 7.31386 8.87937 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.009166 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.714415 B = 3053.998967 C = 3675.310635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.054 3.946 4 C -0.124 4.124 5 C -0.055 4.055 6 C -0.139 4.139 7 H 0.107 0.893 8 C -0.168 4.168 9 C -0.151 4.151 10 H 0.075 0.925 11 C 0.011 3.989 12 C -0.522 4.522 13 H 0.026 0.974 14 C 0.002 3.998 15 N -0.954 5.954 16 Si 0.943 3.057 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.242 1.242 20 C -0.100 4.100 21 C 0.054 3.946 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.018 0.982 25 H 0.015 0.985 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.014 0.986 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.019 0.981 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.281 -12.948 -10.315 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.271 5.271 3 C -0.074 4.074 4 C -0.161 4.161 5 C -0.074 4.074 6 C -0.157 4.157 7 H 0.125 0.875 8 C -0.204 4.204 9 C -0.169 4.169 10 H 0.093 0.907 11 C -0.026 4.026 12 C -0.560 4.560 13 H 0.045 0.955 14 C -0.194 4.194 15 N -0.596 5.596 16 Si 0.766 3.234 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.166 1.166 20 C -0.137 4.137 21 C -0.074 4.074 22 H 0.094 0.906 23 H 0.101 0.899 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.154 -13.036 -10.646 19.656 hybrid contribution -0.318 1.326 1.201 1.817 sum -10.472 -11.711 -9.445 18.330 Atomic orbital electron populations 1.22429 0.86366 1.02918 1.00770 1.62011 1.08465 1.13203 1.43443 1.22119 0.95825 0.89556 0.99937 1.22065 0.94003 1.00755 0.99269 1.20593 0.92371 0.96747 0.97658 1.22404 0.94375 0.96917 1.02008 0.87520 1.23259 1.03110 1.03388 0.90666 1.22246 0.99529 0.93405 1.01759 0.90688 1.19343 0.96541 0.92389 0.94287 1.21531 1.20412 1.05886 1.08208 0.95538 1.25988 0.99578 0.97553 0.96241 1.70077 1.45185 1.18559 1.25762 0.85763 0.79361 0.77433 0.80861 1.19127 1.20960 1.16559 1.21555 0.93851 0.95413 1.02899 1.22158 0.95788 0.98622 0.90806 0.90620 0.89875 0.96306 0.96719 0.89836 0.91526 0.89834 0.93914 0.88000 0.87883 0.96747 0.93901 0.92640 0.90327 0.90797 0.96222 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.59 127.69 1.22 1.67 16 2 N -0.55 -13.21 4.91 -922.57 -4.53 -17.74 16 3 C 0.05 1.49 5.46 86.33 0.47 1.96 16 4 C -0.12 -3.73 3.62 30.65 0.11 -3.62 16 5 C -0.06 -1.73 1.82 -10.71 -0.02 -1.75 16 6 C -0.14 -4.53 5.72 -10.79 -0.06 -4.60 16 7 H 0.11 3.16 8.10 -2.39 -0.02 3.14 16 8 C -0.17 -5.16 9.33 30.59 0.29 -4.88 16 9 C -0.15 -6.14 5.72 -10.80 -0.06 -6.20 16 10 H 0.07 3.28 7.96 -2.38 -0.02 3.26 16 11 C 0.01 0.53 3.14 29.84 0.09 0.62 16 12 C -0.52 -31.13 9.63 25.60 0.25 -30.89 16 13 H 0.03 1.75 7.89 -2.91 -0.02 1.72 16 14 C 0.00 0.14 5.47 84.65 0.46 0.61 16 15 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 16 Si 0.94 45.04 27.47 68.60 1.88 46.92 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.24 -10.64 6.54 99.48 0.65 -9.99 16 20 C -0.10 -2.45 5.36 30.65 0.16 -2.29 16 21 C 0.05 1.26 5.46 86.33 0.47 1.73 16 22 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 24 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 27 H 0.07 2.32 4.69 -2.39 -0.01 2.30 16 28 H 0.08 2.30 6.94 -2.39 -0.02 2.28 16 29 H 0.04 1.63 7.73 -2.38 -0.02 1.61 16 30 H 0.10 2.99 5.82 -2.39 -0.01 2.97 16 31 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.01 0.69 7.20 -2.38 -0.02 0.67 16 33 H 0.04 1.98 3.54 -2.38 -0.01 1.97 16 34 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.09 1.75 8.09 -2.38 -0.02 1.74 16 Total: -1.00 -66.84 286.89 1.99 -64.85 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.95 Total: 14.78 kcal Atomic # 6 Polarization: -51.02 SS G_CDS: 3.39 Total: -47.63 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -4.23 Total: -78.92 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -66.84 1.99 -64.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260384241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.970 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds