Wall clock time and date at job start Mon Mar 30 2020 02:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46745 * 2 1 4 4 C 1.50707 * 109.47103 * 240.00199 * 2 1 3 5 5 H 1.07990 * 119.99934 * 239.99638 * 4 2 1 6 6 C 1.37873 * 119.99710 * 59.99619 * 4 2 1 7 7 N 1.31514 * 120.00316 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99859 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47293 * 90.00333 * 8 6 4 10 10 H 1.48503 * 109.47285 * 209.99850 * 8 6 4 11 11 H 1.48499 * 109.47376 * 330.00520 * 8 6 4 12 12 C 1.52998 * 109.47537 * 120.00078 * 2 1 3 13 13 H 1.09001 * 115.56879 * 34.27058 * 12 2 1 14 14 C 1.53037 * 117.50719 * 248.54315 * 12 2 1 15 15 C 1.52755 * 59.95727 * 252.52966 * 14 12 2 16 16 C 1.53241 * 117.76791 * 252.32248 * 15 14 12 17 17 C 1.53320 * 108.49683 * 162.83690 * 16 15 14 18 18 C 1.53000 * 109.20803 * 54.28223 * 17 16 15 19 19 N 1.46791 * 109.88355 * 297.73235 * 18 17 16 20 20 C 1.46901 * 110.99991 * 188.89990 * 19 18 17 21 21 C 1.47053 * 111.20276 * 64.80365 * 19 18 17 22 22 H 1.09005 * 109.46745 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46894 * 299.99626 * 1 2 3 24 24 H 1.08997 * 109.47560 * 59.99860 * 1 2 3 25 25 H 0.97005 * 119.99892 * 180.02562 * 7 6 4 26 26 H 1.09001 * 117.50461 * 145.04872 * 14 12 2 27 27 H 1.09001 * 117.52587 * 0.02562 * 14 12 2 28 28 H 1.09006 * 109.63339 * 282.53830 * 16 15 14 29 29 H 1.09001 * 109.62868 * 42.92851 * 16 15 14 30 30 H 1.09002 * 109.51898 * 174.20056 * 17 16 15 31 31 H 1.09007 * 109.51529 * 294.30994 * 17 16 15 32 32 H 1.08998 * 109.40671 * 177.60339 * 18 17 16 33 33 H 1.09003 * 109.39747 * 57.85365 * 18 17 16 34 34 H 1.09002 * 109.47401 * 295.78391 * 20 19 18 35 35 H 1.09001 * 109.46874 * 175.78403 * 20 19 18 36 36 H 1.09004 * 109.46970 * 55.78537 * 20 19 18 37 37 H 1.09001 * 109.56814 * 61.74076 * 21 19 18 38 38 H 1.08997 * 109.56775 * 182.09668 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4871 -0.1400 -5.1121 11 1 3.6308 -1.7565 -3.7121 12 6 2.0401 -0.7212 1.2492 13 1 1.4309 -1.5580 1.5911 14 6 2.7439 0.1224 2.3146 15 6 3.5531 -0.8280 1.4340 16 6 4.1040 -2.1042 2.0792 17 6 4.4878 -3.0856 0.9655 18 6 5.4463 -2.3943 -0.0062 19 7 4.7784 -1.2492 -0.6366 20 6 5.5964 -0.6957 -1.7240 21 6 4.4491 -0.2139 0.3545 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.7088 1.1614 -3.4844 26 1 2.5975 -0.1592 3.3574 27 1 2.8433 1.1913 2.1261 28 1 4.9848 -1.8629 2.6743 29 1 3.3415 -2.5502 2.7178 30 1 4.9766 -3.9572 1.4008 31 1 3.5908 -3.3997 0.4318 32 1 5.7548 -3.1021 -0.7757 33 1 6.3248 -2.0467 0.5375 34 1 6.5242 -0.2968 -1.3139 35 1 5.0464 0.1027 -2.2221 36 1 5.8255 -1.4825 -2.4429 37 1 5.3660 0.1599 0.8102 38 1 3.9222 0.6053 -0.1346 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260407452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:11 Heat of formation + Delta-G solvation = 22.270036 kcal Electronic energy + Delta-G solvation = -16776.840502 eV Core-core repulsion = 14426.693048 eV Total energy + Delta-G solvation = -2350.147454 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.14462 -35.81085 -33.36632 -31.91655 -29.77881 -27.09580 -26.16279 -24.80928 -22.45535 -22.01790 -20.79134 -19.37223 -17.61999 -15.83398 -15.19226 -14.67920 -14.43820 -13.97306 -13.71520 -13.42691 -12.60405 -12.55144 -12.39433 -12.01396 -11.61850 -11.40178 -11.05185 -10.94191 -10.69854 -10.61266 -10.47797 -10.44177 -10.15126 -9.96925 -9.78411 -9.30429 -9.05880 -8.65613 -8.18434 -8.07144 -7.33486 -5.69727 -3.67492 3.46302 3.53965 3.61227 4.37519 4.69517 4.92003 5.26261 5.36495 5.49544 5.61935 5.67967 5.76012 5.88915 5.90263 5.95365 6.03361 6.15092 6.25198 6.33256 6.36805 6.40710 6.51889 6.52636 6.64285 6.78154 6.82657 6.98758 7.07119 7.10495 7.41252 7.55898 7.83810 7.88739 8.02550 8.17394 8.41610 8.78440 9.45599 9.94514 11.37902 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023050 B = 0.014477 C = 0.010366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.442178 B = 1933.586776 C = 2700.566119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.068 3.932 3 H 0.021 0.979 4 C -0.470 4.470 5 H 0.088 0.912 6 C 0.051 3.949 7 N -0.909 5.909 8 Si 0.879 3.121 9 H -0.290 1.290 10 H -0.297 1.297 11 H -0.266 1.266 12 C -0.095 4.095 13 H 0.081 0.919 14 C -0.193 4.193 15 C -0.119 4.119 16 C -0.077 4.077 17 C -0.111 4.111 18 C 0.057 3.943 19 N -0.506 5.506 20 C 0.033 3.967 21 C 0.112 3.888 22 H 0.022 0.978 23 H 0.002 0.998 24 H 0.082 0.918 25 H 0.252 0.748 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.018 0.982 34 H 0.009 0.991 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.009 0.991 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 -4.025 6.493 10.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.050 3.950 3 H 0.039 0.961 4 C -0.509 4.509 5 H 0.106 0.894 6 C -0.146 4.146 7 N -0.551 5.551 8 Si 0.708 3.292 9 H -0.217 1.217 10 H -0.224 1.224 11 H -0.190 1.190 12 C -0.113 4.113 13 H 0.099 0.901 14 C -0.231 4.231 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.149 4.149 18 C -0.072 4.072 19 N -0.229 5.229 20 C -0.115 4.115 21 C -0.015 4.015 22 H 0.041 0.959 23 H 0.022 0.978 24 H 0.100 0.900 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.036 0.964 34 H 0.027 0.973 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.943 -4.093 6.138 10.131 hybrid contribution 1.022 -0.119 -0.563 1.173 sum 7.965 -4.213 5.576 10.596 Atomic orbital electron populations 1.21781 0.99027 0.98667 0.99780 1.18375 0.91954 0.94720 0.89975 0.96102 1.21617 1.27789 1.12532 0.88954 0.89405 1.24899 0.95874 0.95193 0.98648 1.69919 1.38805 1.23972 1.22407 0.86799 0.79782 0.79302 0.83271 1.21747 1.22362 1.19025 1.22676 0.91800 0.99440 0.97408 0.90057 1.23108 1.07176 0.97245 0.95569 1.21248 0.95172 0.96575 0.98937 1.21120 0.99387 0.94465 0.96528 1.21521 1.00210 0.96794 0.96330 1.22013 0.94522 0.94100 0.96524 1.61904 1.42449 1.07863 1.10670 1.22283 0.94446 1.00172 0.94596 1.21481 0.95254 0.94147 0.90600 0.95863 0.97849 0.89957 0.93863 0.90492 0.89660 0.93130 0.92476 0.92748 0.90528 0.91863 0.96404 0.97298 0.90881 0.92428 0.97328 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.95 37.16 0.33 -2.98 16 2 C 0.07 1.67 1.75 -91.77 -0.16 1.50 16 3 H 0.02 0.56 7.25 -51.93 -0.38 0.19 16 4 C -0.47 -12.30 6.29 -34.44 -0.22 -12.52 16 5 H 0.09 2.31 5.80 -52.49 -0.30 2.00 16 6 C 0.05 1.41 5.30 -17.82 -0.09 1.32 16 7 N -0.91 -26.30 11.32 55.43 0.63 -25.67 16 8 Si 0.88 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C -0.09 -1.96 4.79 -90.71 -0.43 -2.40 16 13 H 0.08 1.67 8.11 -51.93 -0.42 1.25 16 14 C -0.19 -3.47 9.64 -26.84 -0.26 -3.73 16 15 C -0.12 -2.19 1.93 -154.54 -0.30 -2.49 16 16 C -0.08 -1.23 5.76 -26.44 -0.15 -1.38 16 17 C -0.11 -1.73 6.11 -26.57 -0.16 -1.89 16 18 C 0.06 0.92 5.38 -3.88 -0.02 0.90 16 19 N -0.51 -9.70 2.55 -242.78 -0.62 -10.32 16 20 C 0.03 0.60 9.60 60.07 0.58 1.17 16 21 C 0.11 2.18 4.17 -3.66 -0.02 2.16 16 22 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 24 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 25 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 1.55 8.05 -51.93 -0.42 1.13 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 0.97 8.02 -51.93 -0.42 0.56 16 33 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 34 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 37 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.09 2.10 6.10 -51.93 -0.32 1.78 16 LS Contribution 289.68 15.07 4.37 4.37 Total: -1.00 -27.82 289.68 -8.32 -36.14 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.77 Total: -0.86 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -0.91 Total: -20.33 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.01 Total: -35.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.82 -8.32 -36.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.411 kcal (2) G-P(sol) polarization free energy of solvation -27.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds