Wall clock time and date at job start Mon Mar 30 2020 02:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46983 * 2 1 4 4 C 1.50697 * 109.47261 * 239.99960 * 2 1 3 5 5 H 1.08003 * 120.00086 * 245.15293 * 4 2 1 6 6 C 1.37872 * 120.00451 * 65.15366 * 4 2 1 7 7 N 1.31522 * 119.99591 * 355.73666 * 6 4 2 8 8 Si 1.86798 * 120.00611 * 175.73079 * 6 4 2 9 9 H 1.48500 * 109.47044 * 94.99626 * 8 6 4 10 10 H 1.48501 * 109.47247 * 215.00005 * 8 6 4 11 11 H 1.48502 * 109.46935 * 334.99927 * 8 6 4 12 12 C 1.53001 * 109.47118 * 119.99680 * 2 1 3 13 13 H 1.09003 * 115.55107 * 79.15992 * 12 2 1 14 14 C 1.53038 * 117.50792 * 224.90255 * 12 2 1 15 15 C 1.52766 * 117.50706 * 293.47376 * 12 2 1 16 16 C 1.53245 * 117.76041 * 0.22242 * 15 12 2 17 17 C 1.53325 * 108.68613 * 197.16922 * 16 15 12 18 18 C 1.53004 * 109.18988 * 305.62933 * 17 16 15 19 19 N 1.46783 * 109.88283 * 62.28555 * 18 17 16 20 20 C 1.46903 * 110.99610 * 171.08752 * 19 18 17 21 21 C 1.47048 * 111.19853 * 295.18130 * 19 18 17 22 22 H 1.08995 * 109.46786 * 185.77561 * 1 2 3 23 23 H 1.08990 * 109.47118 * 305.78073 * 1 2 3 24 24 H 1.08996 * 109.46748 * 65.78485 * 1 2 3 25 25 H 0.97003 * 119.99788 * 180.02562 * 7 6 4 26 26 H 1.09000 * 117.50493 * 0.02562 * 14 12 2 27 27 H 1.08993 * 117.50587 * 214.94853 * 14 12 2 28 28 H 1.08997 * 109.62551 * 77.35851 * 16 15 12 29 29 H 1.08999 * 109.62365 * 316.97551 * 16 15 12 30 30 H 1.09004 * 109.51465 * 65.54440 * 17 16 15 31 31 H 1.08996 * 109.51744 * 185.65901 * 17 16 15 32 32 H 1.08995 * 109.40079 * 182.41063 * 18 17 16 33 33 H 1.08994 * 109.40120 * 302.16085 * 18 17 16 34 34 H 1.09001 * 109.47224 * 63.95618 * 20 19 18 35 35 H 1.09003 * 109.47129 * 183.95589 * 20 19 18 36 36 H 1.09002 * 109.47208 * 303.95324 * 20 19 18 37 37 H 1.09000 * 109.56061 * 177.90046 * 21 19 18 38 38 H 1.08995 * 109.55970 * 298.23490 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5830 -1.6345 -1.1335 6 6 1.7893 -0.1807 -2.4799 7 7 1.0479 0.8986 -2.6037 8 14 2.5128 -0.9958 -3.9970 9 1 1.5130 -1.9230 -4.5851 10 1 2.8704 0.0443 -4.9948 11 1 3.7301 -1.7567 -3.6171 12 6 2.0401 -0.7212 1.2493 13 1 2.0224 -1.8101 1.2037 14 6 3.1821 -0.0643 2.0279 15 6 1.7664 -0.0673 2.6026 16 6 0.9978 1.2584 2.6124 17 6 1.2069 1.9374 3.9711 18 6 0.8128 0.9652 5.0850 19 7 1.6797 -0.2186 5.0442 20 6 1.4668 -1.0678 6.2238 21 6 1.4801 -0.9812 3.8029 22 1 -0.3633 -1.0224 0.1034 23 1 -0.3633 0.6008 0.8336 24 1 -0.3633 0.4215 -0.9372 25 1 0.8765 1.2710 -3.4828 26 1 3.5699 0.8819 1.6504 27 1 3.9162 -0.7210 2.4946 28 1 -0.0641 1.0671 2.4581 29 1 1.3726 1.9046 1.8186 30 1 2.2554 2.2135 4.0827 31 1 0.5864 2.8315 4.0307 32 1 0.9194 1.4589 6.0509 33 1 -0.2244 0.6594 4.9485 34 1 0.4472 -1.4532 6.2149 35 1 2.1701 -1.9003 6.2039 36 1 1.6251 -0.4800 7.1281 37 1 2.1617 -1.8316 3.7835 38 1 0.4505 -1.3354 3.7538 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260407456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:12 Heat of formation + Delta-G solvation = -3.294368 kcal Electronic energy + Delta-G solvation = -16004.161509 eV Core-core repulsion = 13652.905499 eV Total energy + Delta-G solvation = -2351.256010 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67431 -37.70037 -35.18767 -33.48813 -31.94503 -28.80349 -27.73904 -26.96357 -23.85113 -23.82996 -22.73126 -20.73693 -19.26466 -18.40314 -16.69226 -16.55742 -16.09050 -15.73025 -15.24389 -14.88901 -14.79120 -14.18656 -13.76148 -13.63800 -13.26527 -13.19609 -12.89943 -12.81872 -12.74127 -12.44281 -12.33969 -12.16711 -11.80848 -11.73853 -11.48297 -11.22444 -10.85378 -10.50342 -10.36087 -10.03450 -9.20392 -8.06716 -6.19002 1.40779 1.41937 1.52765 2.44322 2.83883 3.20186 3.32752 3.77203 3.92940 4.13608 4.15809 4.22919 4.41674 4.50507 4.56691 4.62247 4.72545 4.78202 4.87750 4.89581 4.97529 5.00191 5.04289 5.06456 5.07365 5.19904 5.24492 5.37572 5.46534 5.52968 5.58518 5.63989 6.02002 6.13845 6.15263 6.23874 6.44690 6.92813 7.48405 8.98438 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051872 B = 0.006611 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.664809 B = 4234.398203 C = 4467.535331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.077 3.923 3 H -0.003 1.003 4 C -0.527 4.527 5 H 0.049 0.951 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.952 3.048 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.269 1.269 12 C -0.127 4.127 13 H 0.084 0.916 14 C -0.158 4.158 15 C -0.114 4.114 16 C -0.081 4.081 17 C -0.109 4.109 18 C 0.059 3.941 19 N -0.552 5.552 20 C 0.025 3.975 21 C 0.104 3.896 22 H 0.021 0.979 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.259 0.741 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -1.194 15.430 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.059 3.941 3 H 0.015 0.985 4 C -0.565 4.565 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.778 3.222 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.193 1.193 12 C -0.146 4.146 13 H 0.102 0.898 14 C -0.195 4.195 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.146 4.146 18 C -0.068 4.068 19 N -0.276 5.276 20 C -0.122 4.122 21 C -0.024 4.024 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.095 -0.916 15.328 15.356 hybrid contribution -0.498 -0.580 -1.372 1.570 sum -0.403 -1.496 13.956 14.042 Atomic orbital electron populations 1.21722 0.98571 0.98116 0.99936 1.18110 0.92330 0.93423 0.90233 0.98494 1.21571 1.34297 1.08436 0.92184 0.93233 1.25734 0.95539 0.95761 1.01798 1.70053 1.38918 1.23145 1.23880 0.85638 0.78927 0.78222 0.79443 1.20257 1.20901 1.19329 1.22464 1.02362 0.97868 0.91924 0.89823 1.22915 0.91272 1.01862 1.03500 1.21534 0.98313 0.97822 0.93725 1.21222 0.98915 0.94186 0.97553 1.21577 1.02119 0.97814 0.93122 1.22061 0.93800 0.91332 0.99656 1.61927 1.55081 1.08415 1.02200 1.22413 0.99767 0.97445 0.92611 1.21601 0.98916 0.94443 0.87460 0.95936 0.94310 0.93663 0.93162 0.90856 0.88547 0.92232 0.93641 0.91778 0.90159 0.89067 0.95220 0.95585 0.91019 0.89944 0.90623 0.95034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.23 8.86 71.98 0.64 -5.59 16 2 C 0.08 3.97 1.72 -11.54 -0.02 3.95 16 3 H 0.00 -0.17 7.07 -2.39 -0.02 -0.19 16 4 C -0.53 -29.81 8.49 25.60 0.22 -29.60 16 5 H 0.05 2.77 7.75 -2.91 -0.02 2.75 16 6 C 0.01 0.55 5.34 84.65 0.45 1.00 16 7 N -0.92 -54.50 11.52 21.45 0.25 -54.26 16 8 Si 0.95 44.60 29.54 68.60 2.03 46.63 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 C -0.13 -5.40 4.75 -10.86 -0.05 -5.45 16 13 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 14 C -0.16 -5.94 9.58 30.54 0.29 -5.65 16 15 C -0.11 -3.97 2.06 -52.06 -0.11 -4.07 16 16 C -0.08 -2.76 4.09 30.79 0.13 -2.64 16 17 C -0.11 -2.87 6.12 30.70 0.19 -2.68 16 18 C 0.06 1.38 5.38 86.33 0.46 1.85 16 19 N -0.55 -13.96 4.92 -921.22 -4.53 -18.49 16 20 C 0.03 0.48 9.60 127.69 1.23 1.71 16 21 C 0.10 3.03 5.25 86.46 0.45 3.48 16 22 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.04 1.70 5.05 -2.39 -0.01 1.68 16 24 H 0.04 2.50 6.22 -2.39 -0.01 2.48 16 25 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 26 H 0.07 2.92 8.09 -2.39 -0.02 2.90 16 27 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 28 H 0.06 2.06 6.36 -2.39 -0.02 2.04 16 29 H 0.04 1.77 6.94 -2.39 -0.02 1.75 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 1.72 8.03 -2.39 -0.02 1.70 16 33 H 0.03 0.70 8.13 -2.39 -0.02 0.68 16 34 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.29 8.06 -2.39 -0.02 1.27 16 37 H 0.08 2.14 8.09 -2.39 -0.02 2.12 16 38 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -61.24 291.75 2.62 -58.62 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.00 Total: 11.19 kcal Atomic # 6 Polarization: -47.58 SS G_CDS: 3.88 Total: -43.70 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -4.28 Total: -72.74 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -61.24 2.62 -58.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.329 kcal (2) G-P(sol) polarization free energy of solvation -61.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds