Wall clock time and date at job start Mon Mar 30 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46422 * 2 1 4 4 C 1.50703 * 109.46947 * 240.00702 * 2 1 3 5 5 H 1.07998 * 119.99639 * 241.93509 * 4 2 1 6 6 C 1.37874 * 120.00042 * 61.93854 * 4 2 1 7 7 N 1.31514 * 119.99850 * 216.64516 * 6 4 2 8 8 Si 1.86795 * 120.00413 * 36.64715 * 6 4 2 9 9 H 1.48506 * 109.47348 * 94.80685 * 8 6 4 10 10 H 1.48502 * 109.47539 * 214.81094 * 8 6 4 11 11 H 1.48506 * 109.47183 * 334.81214 * 8 6 4 12 12 C 1.52990 * 109.47288 * 120.00216 * 2 1 3 13 13 H 1.09007 * 115.55512 * 38.18860 * 12 2 1 14 14 C 1.53033 * 117.50354 * 183.88192 * 12 2 1 15 15 C 1.52771 * 59.99353 * 107.49118 * 14 12 2 16 16 C 1.53241 * 117.77742 * 107.69823 * 15 14 12 17 17 C 1.53335 * 108.51049 * 197.16657 * 16 15 14 18 18 C 1.53001 * 109.18752 * 305.71489 * 17 16 15 19 19 N 1.46781 * 109.89827 * 62.26926 * 18 17 16 20 20 C 1.46895 * 111.00263 * 171.09911 * 19 18 17 21 21 C 1.47052 * 111.19518 * 295.19315 * 19 18 17 22 22 H 1.08991 * 109.47560 * 308.22025 * 1 2 3 23 23 H 1.09002 * 109.47501 * 68.22784 * 1 2 3 24 24 H 1.09007 * 109.46700 * 188.22311 * 1 2 3 25 25 H 0.96996 * 120.00091 * 179.97438 * 7 6 4 26 26 H 1.09009 * 117.50463 * 214.97670 * 14 12 2 27 27 H 1.09001 * 117.50705 * 359.97438 * 14 12 2 28 28 H 1.09000 * 109.62672 * 316.87122 * 16 15 14 29 29 H 1.09003 * 109.62860 * 77.45488 * 16 15 14 30 30 H 1.08995 * 109.51586 * 185.79782 * 17 16 15 31 31 H 1.08994 * 109.51426 * 65.62567 * 17 16 15 32 32 H 1.09004 * 109.40084 * 302.13781 * 18 17 16 33 33 H 1.09008 * 109.32869 * 182.35980 * 18 17 16 34 34 H 1.09000 * 109.47217 * 184.21173 * 20 19 18 35 35 H 1.09006 * 109.47139 * 304.20905 * 20 19 18 36 36 H 1.09004 * 109.47636 * 64.20471 * 20 19 18 37 37 H 1.08995 * 109.56638 * 298.25742 * 21 19 18 38 38 H 1.09001 * 109.56736 * 177.90448 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6272 -1.6063 -1.1319 6 6 1.7325 -0.2162 -2.4824 7 7 1.4904 -1.0439 -3.4753 8 14 1.6703 1.6287 -2.7681 9 1 2.9829 2.0944 -3.2833 10 1 0.6102 1.9405 -3.7603 11 1 1.3682 2.3180 -1.4879 12 6 2.0400 -0.7212 1.2491 13 1 1.4680 -1.5983 1.5522 14 6 3.5524 -0.7491 1.4811 15 6 2.6617 0.1332 2.3541 16 6 2.4308 -0.2997 3.8058 17 6 1.2085 0.4502 4.3489 18 6 1.4136 1.9538 4.1540 19 7 1.5218 2.2620 2.7230 20 6 1.5074 3.7129 2.4943 21 6 2.7222 1.6479 2.1362 22 1 -0.3634 0.6357 0.8073 23 1 -0.3634 0.3812 -0.9543 24 1 -0.3633 -1.0172 0.1470 25 1 1.2791 -0.6964 -4.3559 26 1 3.9754 -1.6445 1.9368 27 1 4.1841 -0.2539 0.7436 28 1 2.2479 -1.3736 3.8430 29 1 3.3074 -0.0537 4.4051 30 1 1.0903 0.2332 5.4105 31 1 0.3166 0.1314 3.8096 32 1 2.3275 2.2633 4.6611 33 1 0.5650 2.4915 4.5771 34 1 1.5134 3.9120 1.4227 35 1 0.6091 4.1419 2.9385 36 1 2.3889 4.1618 2.9523 37 1 3.6119 2.0510 2.6199 38 1 2.7567 1.8619 1.0680 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260407460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:14 Heat of formation + Delta-G solvation = 3.598414 kcal Electronic energy + Delta-G solvation = -16364.289011 eV Core-core repulsion = 14013.331894 eV Total energy + Delta-G solvation = -2350.957116 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.68528 -37.51980 -35.25494 -33.66569 -32.36736 -28.76134 -27.59176 -26.96944 -24.22398 -23.70773 -22.19821 -21.09773 -19.16998 -18.59336 -16.68785 -16.47600 -15.95450 -15.68216 -15.45415 -15.11664 -14.59473 -14.08332 -14.03312 -13.74533 -13.59891 -13.14098 -13.06854 -12.99642 -12.67620 -12.40689 -12.35196 -12.00700 -11.78115 -11.58191 -11.53395 -11.39351 -10.94519 -10.40700 -10.37836 -9.91110 -9.12036 -8.37056 -6.07958 1.32316 1.38684 1.49207 2.41374 2.81677 2.96350 3.37192 3.77601 3.95364 4.12649 4.20693 4.24446 4.44874 4.51175 4.55464 4.63338 4.71972 4.79502 4.81355 4.89418 4.91470 5.01829 5.02777 5.04548 5.09596 5.12315 5.19426 5.31072 5.48590 5.52476 5.58734 5.59472 5.81326 5.99958 6.20003 6.30822 6.48211 6.90056 7.44026 8.80503 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031033 B = 0.009943 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.050372 B = 2815.366447 C = 3258.976003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 H 0.029 0.971 4 C -0.538 4.538 5 H 0.031 0.969 6 C 0.042 3.958 7 N -0.911 5.911 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.244 1.244 12 C -0.113 4.113 13 H 0.081 0.919 14 C -0.169 4.169 15 C -0.115 4.115 16 C -0.077 4.077 17 C -0.110 4.110 18 C 0.059 3.941 19 N -0.555 5.555 20 C 0.027 3.973 21 C 0.095 3.905 22 H 0.049 0.951 23 H 0.019 0.981 24 H 0.032 0.968 25 H 0.264 0.736 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.032 0.968 37 H 0.039 0.961 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 7.764 16.740 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.033 3.967 3 H 0.047 0.953 4 C -0.575 4.575 5 H 0.049 0.951 6 C -0.159 4.159 7 N -0.548 5.548 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.167 1.167 12 C -0.131 4.131 13 H 0.099 0.901 14 C -0.207 4.207 15 C -0.115 4.115 16 C -0.115 4.115 17 C -0.148 4.148 18 C -0.069 4.069 19 N -0.279 5.279 20 C -0.121 4.121 21 C -0.033 4.033 22 H 0.068 0.932 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.286 7.545 16.328 17.990 hybrid contribution 0.782 0.706 -0.795 1.320 sum 1.068 8.252 15.534 17.622 Atomic orbital electron populations 1.21804 0.98343 0.99218 0.98392 1.18556 0.92189 0.95125 0.90876 0.95293 1.21082 1.34515 1.11202 0.90707 0.95089 1.25554 0.93318 1.00903 0.96146 1.70401 1.43789 1.37247 1.03413 0.86344 0.77776 0.84585 0.78969 1.20278 1.21426 1.16719 1.22183 0.94886 0.99718 0.96343 0.90105 1.22905 0.94162 1.01514 1.02091 1.21602 1.04531 0.92157 0.93209 1.21192 0.98641 0.99785 0.91841 1.21566 0.97876 0.94161 1.01196 1.22089 1.00837 0.97012 0.86941 1.61825 1.39317 1.11293 1.15475 1.22357 1.01438 0.86884 1.01443 1.21619 0.90487 0.92153 0.99036 0.93213 0.96219 0.94919 0.92702 0.88458 0.90569 0.91673 0.90823 0.89220 0.92571 0.94518 0.89745 0.92874 0.89917 0.94935 0.94301 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 9.04 71.98 0.65 -4.88 16 2 C 0.05 2.45 1.89 -11.54 -0.02 2.42 16 3 H 0.03 1.41 3.58 -2.39 -0.01 1.41 16 4 C -0.54 -31.01 8.55 25.60 0.22 -30.80 16 5 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 6 C 0.04 2.45 4.87 84.65 0.41 2.86 16 7 N -0.91 -56.84 13.96 21.45 0.30 -56.54 16 8 Si 0.90 44.28 27.00 68.60 1.85 46.13 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.24 -11.37 6.33 99.48 0.63 -10.74 16 12 C -0.11 -4.61 4.73 -10.82 -0.05 -4.66 16 13 H 0.08 3.32 8.12 -2.38 -0.02 3.30 16 14 C -0.17 -6.19 9.43 30.53 0.29 -5.90 16 15 C -0.11 -3.74 2.11 -52.16 -0.11 -3.85 16 16 C -0.08 -1.96 5.76 30.79 0.18 -1.78 16 17 C -0.11 -2.49 6.12 30.71 0.19 -2.30 16 18 C 0.06 1.32 5.38 86.33 0.46 1.78 16 19 N -0.55 -15.94 4.91 -922.04 -4.53 -20.48 16 20 C 0.03 0.65 9.60 127.69 1.23 1.88 16 21 C 0.09 3.04 4.80 86.32 0.41 3.46 16 22 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.02 0.93 6.54 -2.39 -0.02 0.91 16 24 H 0.03 1.48 8.12 -2.38 -0.02 1.46 16 25 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 27 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 28 H 0.06 1.63 8.08 -2.39 -0.02 1.61 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 0.76 8.13 -2.38 -0.02 0.74 16 33 H 0.08 1.63 8.03 -2.38 -0.02 1.61 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.69 8.06 -2.38 -0.02 1.67 16 36 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 2.27 5.70 -2.39 -0.01 2.26 16 Total: -1.00 -64.22 292.64 2.40 -61.82 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.92 Total: 10.84 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 3.86 Total: -41.77 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -4.23 Total: -77.02 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.85 Total: 46.13 kcal Total: -64.22 2.40 -61.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.418 kcal (2) G-P(sol) polarization free energy of solvation -64.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds