Wall clock time and date at job start Mon Mar 30 2020 03:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47851 * 110.99641 * 2 1 4 4 C 1.54906 * 104.79599 * 146.36689 * 3 2 1 5 5 C 1.55144 * 101.65249 * 322.93111 * 4 3 2 6 6 C 1.47440 * 111.00342 * 120.84364 * 2 1 3 7 7 H 1.08995 * 109.88849 * 117.17722 * 6 2 1 8 8 C 1.52998 * 109.88804 * 356.14691 * 6 2 1 9 9 H 1.08997 * 109.47475 * 321.02151 * 8 6 2 10 10 C 1.53005 * 109.46745 * 81.02033 * 8 6 2 11 11 C 1.50701 * 109.46934 * 188.23688 * 10 8 6 12 12 H 1.08000 * 120.00282 * 0.02562 * 11 10 8 13 13 C 1.37880 * 120.00189 * 180.02562 * 11 10 8 14 14 N 1.31522 * 119.99533 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00348 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.46988 * 180.02562 * 15 13 11 17 17 H 1.48510 * 109.46789 * 299.99869 * 15 13 11 18 18 H 1.48496 * 109.47152 * 59.99567 * 15 13 11 19 19 C 1.53000 * 109.47193 * 201.01920 * 8 6 2 20 20 C 1.53000 * 117.49775 * 149.35590 * 19 8 6 21 21 C 1.52991 * 60.00006 * 252.51272 * 20 19 8 22 22 H 1.08998 * 109.47166 * 300.55875 * 1 2 3 23 23 H 1.08996 * 109.47092 * 60.56322 * 1 2 3 24 24 H 1.09002 * 109.46743 * 180.56301 * 1 2 3 25 25 H 1.09004 * 110.37544 * 265.19442 * 3 2 1 26 26 H 1.08992 * 110.37575 * 27.42424 * 3 2 1 27 27 H 1.09008 * 110.99146 * 81.01823 * 4 3 2 28 28 H 1.08994 * 110.99296 * 204.80087 * 4 3 2 29 29 H 1.08996 * 110.70311 * 277.27049 * 5 4 3 30 30 H 1.09003 * 110.70804 * 154.03634 * 5 4 3 31 31 H 1.08998 * 109.46986 * 68.23984 * 10 8 6 32 32 H 1.08997 * 109.47598 * 308.23513 * 10 8 6 33 33 H 0.96997 * 120.00051 * 359.97438 * 14 13 11 34 34 H 1.09006 * 115.54990 * 295.06584 * 19 8 6 35 35 H 1.08997 * 117.50223 * 0.02562 * 20 19 8 36 36 H 1.09007 * 117.49489 * 145.02035 * 20 19 8 37 37 H 1.09006 * 117.49689 * 252.51343 * 21 20 19 38 38 H 1.08998 * 117.50320 * 107.49127 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3029 0.8295 5 6 2.9159 0.2822 1.9314 6 6 1.9975 -0.7057 1.1818 7 1 2.5674 -1.5800 0.8674 8 6 0.8439 -1.1356 2.0902 9 1 0.0881 -0.3506 2.1140 10 6 0.2228 -2.4254 1.5501 11 6 -1.0333 -2.7393 2.3212 12 1 -1.3566 -2.0843 3.1167 13 6 -1.7699 -3.8629 2.0112 14 7 -1.3760 -4.6608 1.0428 15 14 -3.3273 -4.2517 2.9666 16 1 -3.9293 -5.5042 2.4432 17 1 -2.9960 -4.4252 4.4038 18 1 -4.2941 -3.1351 2.8128 19 6 1.3723 -1.3778 3.5055 20 6 0.4182 -1.1101 4.6713 21 6 1.5819 -0.1545 4.4003 22 1 -0.3633 0.5225 0.8849 23 1 -0.3633 0.5050 -0.8950 24 1 -0.3633 -1.0277 0.0101 25 1 2.2147 1.7040 -1.0182 26 1 1.2880 2.0596 0.4706 27 1 4.1302 0.9283 0.2241 28 1 3.5498 2.2722 1.2634 29 1 2.3745 0.7747 2.7391 30 1 3.8002 -0.2279 2.3136 31 1 0.9324 -3.2450 1.6622 32 1 -0.0208 -2.2974 0.4954 33 1 -0.5675 -4.4587 0.5465 34 1 2.0755 -2.2041 3.6098 35 1 -0.5860 -0.7618 4.4299 36 1 0.4935 -1.7605 5.5428 37 1 2.4228 -0.1763 5.0935 38 1 1.3435 0.8228 3.9806 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260427247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:21 Heat of formation + Delta-G solvation = 34.415623 kcal Electronic energy + Delta-G solvation = -16419.293840 eV Core-core repulsion = 14069.673058 eV Total energy + Delta-G solvation = -2349.620782 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.72470 -36.54284 -33.70787 -31.88738 -30.77456 -27.66919 -25.24506 -24.31716 -22.21467 -21.92651 -20.53677 -20.29220 -18.81972 -16.71107 -15.73258 -15.35161 -14.65749 -14.27706 -13.76260 -13.60516 -13.36019 -12.72781 -12.30609 -12.25096 -11.79404 -11.58161 -11.14310 -10.99817 -10.92282 -10.76676 -10.65086 -10.46812 -10.33464 -10.11940 -9.96272 -9.60246 -9.46750 -8.96686 -8.40006 -8.20605 -7.74796 -6.26340 -3.94463 3.46092 3.47630 3.66214 4.39021 4.46757 4.59566 4.95006 5.03156 5.19261 5.32493 5.46092 5.50320 5.54393 5.67006 5.82838 5.88234 5.92868 5.96672 5.98125 6.01644 6.09057 6.26522 6.27286 6.34427 6.38728 6.48328 6.61943 6.63368 6.72533 6.97788 7.00881 7.46704 7.51154 7.59638 7.63273 8.31362 8.56841 8.97817 9.75820 11.13385 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031398 B = 0.009142 C = 0.007785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.571262 B = 3062.047293 C = 3595.830040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.526 5.526 3 C 0.040 3.960 4 C -0.132 4.132 5 C -0.147 4.147 6 C 0.077 3.923 7 H 0.077 0.923 8 C -0.067 4.067 9 H 0.070 0.930 10 C 0.013 3.987 11 C -0.590 4.590 12 H 0.051 0.949 13 C 0.013 3.987 14 N -0.917 5.917 15 Si 1.063 2.937 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.290 1.290 19 C -0.109 4.109 20 C -0.163 4.163 21 C -0.202 4.202 22 H 0.029 0.971 23 H 0.050 0.950 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.005 0.995 32 H 0.024 0.976 33 H 0.268 0.732 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.780 10.933 2.422 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 N -0.250 5.250 3 C -0.088 4.088 4 C -0.170 4.170 5 C -0.185 4.185 6 C -0.031 4.031 7 H 0.095 0.905 8 C -0.086 4.086 9 H 0.088 0.912 10 C -0.023 4.023 11 C -0.628 4.628 12 H 0.070 0.930 13 C -0.190 4.190 14 N -0.554 5.554 15 Si 0.892 3.108 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.216 1.216 19 C -0.128 4.128 20 C -0.200 4.200 21 C -0.239 4.239 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.125 0.875 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.023 0.977 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.682 9.579 2.086 11.331 hybrid contribution 0.979 1.499 0.678 1.914 sum 6.660 11.078 2.764 13.218 Atomic orbital electron populations 1.23084 0.87508 1.05493 0.98958 1.63710 1.08600 1.12812 1.39843 1.23048 0.95441 0.90680 0.99653 1.22709 0.97594 0.99156 0.97543 1.23212 0.99795 0.97190 0.98320 1.22506 0.95553 0.96346 0.88651 0.90483 1.21336 0.95223 1.00625 0.91457 0.91190 1.19505 0.95718 0.90973 0.96131 1.22069 1.09294 1.11527 1.19947 0.93036 1.25724 1.02642 0.93357 0.97302 1.70772 1.25223 1.38602 1.20754 0.83626 0.75564 0.76186 0.75429 1.20940 1.21638 1.21648 1.22007 1.01453 0.97185 0.92156 1.22825 0.95188 1.02019 0.99964 1.23081 1.01145 0.95087 1.04576 0.95260 0.93094 0.87472 0.91065 0.94264 0.91272 0.91655 0.89701 0.91525 0.97715 0.95826 0.92112 0.88979 0.88900 0.89781 0.89852 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.06 8.20 60.06 0.49 0.44 16 2 N -0.53 -9.24 5.44 -231.57 -1.26 -10.50 16 3 C 0.04 0.57 6.73 -2.29 -0.02 0.56 16 4 C -0.13 -1.70 7.08 -24.59 -0.17 -1.88 16 5 C -0.15 -2.15 5.22 -24.90 -0.13 -2.28 16 6 C 0.08 1.38 3.18 -66.73 -0.21 1.16 16 7 H 0.08 1.48 8.00 -51.93 -0.42 1.07 16 8 C -0.07 -1.34 1.05 -90.62 -0.09 -1.44 16 9 H 0.07 1.46 5.36 -51.93 -0.28 1.18 16 10 C 0.01 0.32 3.10 -27.88 -0.09 0.23 16 11 C -0.59 -16.06 8.53 -34.44 -0.29 -16.36 16 12 H 0.05 1.38 5.79 -52.49 -0.30 1.07 16 13 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 14 N -0.92 -27.98 13.65 55.43 0.76 -27.22 16 15 Si 1.06 25.37 29.90 -169.99 -5.08 20.28 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.11 -2.01 4.10 -90.62 -0.37 -2.39 16 20 C -0.16 -2.90 9.17 -26.74 -0.25 -3.15 16 21 C -0.20 -3.08 8.19 -26.74 -0.22 -3.30 16 22 H 0.03 0.54 6.17 -51.93 -0.32 0.22 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.11 2.31 4.27 -51.93 -0.22 2.09 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.55 7.76 -51.93 -0.40 0.15 16 27 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.23 4.10 -51.93 -0.21 1.02 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.00 0.12 7.99 -51.93 -0.42 -0.29 16 32 H 0.02 0.62 5.17 -51.93 -0.27 0.36 16 33 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 34 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 35 H 0.09 1.77 7.13 -51.93 -0.37 1.40 16 36 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.28 6.62 -51.93 -0.34 0.93 16 LS Contribution 281.04 15.07 4.24 4.24 Total: -1.00 -29.07 281.04 -8.82 -37.89 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.03 Total: 3.41 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: -1.45 Total: -28.11 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.50 Total: -37.72 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.07 -8.82 -37.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.308 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds