Wall clock time and date at job start Mon Mar 30 2020 03:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47904 * 110.99888 * 2 1 4 4 C 1.53995 * 107.05505 * 145.84618 * 3 2 1 5 5 C 1.54595 * 105.13903 * 358.77543 * 4 3 2 6 6 C 1.48531 * 110.99915 * 117.39798 * 2 1 3 7 7 H 1.08998 * 110.66641 * 318.70794 * 6 2 1 8 8 C 1.52996 * 110.66590 * 81.84201 * 6 2 1 9 9 H 1.09007 * 109.46676 * 166.72217 * 8 6 2 10 10 C 1.53001 * 109.47182 * 46.72531 * 8 6 2 11 11 C 1.50706 * 109.47120 * 172.90121 * 10 8 6 12 12 H 1.08003 * 119.99709 * 354.20801 * 11 10 8 13 13 C 1.37871 * 119.99864 * 174.20371 * 11 10 8 14 14 N 1.31516 * 120.00292 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99828 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47007 * 60.00232 * 15 13 11 17 17 H 1.48507 * 109.47237 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47424 * 300.00242 * 15 13 11 19 19 C 1.52993 * 109.47293 * 286.72415 * 8 6 2 20 20 C 1.53006 * 117.50149 * 254.88263 * 19 8 6 21 21 C 1.52998 * 117.50081 * 186.22217 * 19 8 6 22 22 H 1.09008 * 109.47181 * 37.25201 * 1 2 3 23 23 H 1.08998 * 109.47343 * 157.25220 * 1 2 3 24 24 H 1.08997 * 109.47322 * 277.25505 * 1 2 3 25 25 H 1.08999 * 109.91887 * 26.49030 * 3 2 1 26 26 H 1.09010 * 109.91607 * 265.19578 * 3 2 1 27 27 H 1.08998 * 110.30649 * 239.85892 * 4 3 2 28 28 H 1.09007 * 110.38934 * 117.73259 * 4 3 2 29 29 H 1.08995 * 110.72532 * 96.40289 * 5 4 3 30 30 H 1.09006 * 110.72005 * 219.68725 * 5 4 3 31 31 H 1.08994 * 109.47155 * 292.90699 * 10 8 6 32 32 H 1.09004 * 109.47238 * 52.90619 * 10 8 6 33 33 H 0.96993 * 120.00267 * 179.97438 * 14 13 11 34 34 H 1.08996 * 115.55100 * 40.55165 * 19 8 6 35 35 H 1.08998 * 117.49740 * 359.97438 * 20 19 8 36 36 H 1.08998 * 117.49782 * 145.02032 * 20 19 8 37 37 H 1.08998 * 117.50166 * 214.97724 * 21 19 8 38 38 H 1.09007 * 117.49781 * 0.02562 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 0.8265 5 6 3.4491 -0.0930 1.3153 6 6 2.0013 -0.6381 1.2311 7 1 1.4238 -0.3322 2.1035 8 6 2.0051 -2.1616 1.0912 9 1 2.6063 -2.5982 1.8889 10 6 2.5992 -2.5478 -0.2648 11 6 2.7645 -4.0442 -0.3331 12 1 2.5636 -4.6500 0.5382 13 6 3.1722 -4.6398 -1.5078 14 7 3.4173 -3.9021 -2.5686 15 14 3.3764 -6.4947 -1.5925 16 1 2.0786 -7.1499 -1.2896 17 1 3.8196 -6.8821 -2.9560 18 1 4.3927 -6.9268 -0.5997 19 6 0.5712 -2.6863 1.1878 20 6 0.1582 -3.3784 2.4884 21 6 0.3745 -4.2033 1.2172 22 1 -0.3634 0.8181 -0.6221 23 1 -0.3634 -0.9477 -0.3974 24 1 -0.3634 0.1298 1.0194 25 1 1.2758 2.0562 0.4571 26 1 2.2122 1.6967 -1.0213 27 1 3.2136 2.0428 1.6766 28 1 4.1479 1.6460 0.2037 29 1 4.1115 -0.6541 0.6561 30 1 3.8122 -0.1199 2.3427 31 1 1.9312 -2.2193 -1.0610 32 1 3.5710 -2.0691 -0.3854 33 1 3.7045 -4.3211 -3.3949 34 1 -0.1829 -2.0909 0.6732 35 1 0.9083 -3.4603 3.2751 36 1 -0.8677 -3.2386 2.8291 37 1 -0.5093 -4.6059 0.7223 38 1 1.2667 -4.8276 1.1682 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260427249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:22 Heat of formation + Delta-G solvation = 14.079406 kcal Electronic energy + Delta-G solvation = -16320.609650 eV Core-core repulsion = 13970.107024 eV Total energy + Delta-G solvation = -2350.502626 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53805 -38.00624 -34.94388 -33.11131 -32.70708 -29.40120 -26.75294 -26.21355 -23.88611 -22.98010 -21.89428 -21.24122 -20.11388 -18.57070 -16.94699 -16.43254 -16.32588 -15.53809 -15.42328 -14.93793 -14.61114 -14.23380 -13.72813 -13.61134 -13.31731 -13.14811 -12.82252 -12.55273 -12.31613 -12.29687 -12.14608 -12.10207 -11.78161 -11.49514 -11.42775 -11.04367 -10.89998 -10.44627 -10.37035 -10.18069 -9.05243 -8.02577 -6.07376 1.41407 1.43207 1.49783 2.48798 3.16155 3.27599 3.31137 3.74663 3.89710 4.10098 4.19174 4.33238 4.35768 4.37327 4.52514 4.60209 4.66929 4.71777 4.79471 4.91280 4.93163 4.98506 5.08975 5.10324 5.16412 5.26096 5.31235 5.39227 5.40641 5.46289 5.65278 5.89141 6.05469 6.16362 6.24578 6.35987 6.50673 7.10923 7.56804 9.08939 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026493 B = 0.009674 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.643841 B = 2893.776449 C = 3432.314310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.535 5.535 3 C 0.035 3.965 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.080 3.920 7 H 0.058 0.942 8 C -0.033 4.033 9 H 0.050 0.950 10 C 0.062 3.938 11 C -0.518 4.518 12 H 0.070 0.930 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.943 3.057 16 H -0.268 1.268 17 H -0.291 1.291 18 H -0.270 1.270 19 C -0.146 4.146 20 C -0.173 4.173 21 C -0.189 4.189 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.000 1.000 32 H -0.020 1.020 33 H 0.255 0.745 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.205 8.483 9.584 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.092 4.092 4 C -0.161 4.161 5 C -0.164 4.164 6 C -0.028 4.028 7 H 0.076 0.924 8 C -0.052 4.052 9 H 0.068 0.932 10 C 0.025 3.975 11 C -0.556 4.556 12 H 0.088 0.912 13 C -0.197 4.197 14 N -0.578 5.578 15 Si 0.770 3.230 16 H -0.194 1.194 17 H -0.217 1.217 18 H -0.195 1.195 19 C -0.164 4.164 20 C -0.210 4.210 21 C -0.225 4.225 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.018 0.982 32 H -0.002 1.002 33 H 0.064 0.936 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.007 8.195 8.941 13.121 hybrid contribution 0.013 -0.732 -0.090 0.738 sum -4.994 7.463 8.851 12.608 Atomic orbital electron populations 1.22646 0.87799 1.01874 1.00509 1.64612 1.08494 1.14938 1.37950 1.22897 0.96388 0.89556 1.00386 1.22356 0.97481 0.96304 0.99916 1.22577 0.96257 0.96191 1.01387 1.22806 0.95183 0.94417 0.90361 0.92393 1.20571 0.93656 0.92689 0.98289 0.93206 1.18662 0.93392 0.93199 0.92204 1.22013 1.42478 0.94498 0.96648 0.91207 1.25795 0.96229 1.01798 0.95923 1.70133 1.48745 1.36655 1.02220 0.85832 0.78793 0.81578 0.76845 1.19354 1.21656 1.19537 1.22465 0.97777 0.95350 1.00817 1.23063 1.02230 1.04783 0.90893 1.23133 1.02653 0.95383 1.01355 0.91073 0.92476 0.93988 0.92384 0.91451 0.89441 0.91226 0.93027 0.89881 0.98200 1.00188 0.93607 0.87780 0.89112 0.87827 0.90084 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 8.34 127.69 1.07 1.66 16 2 N -0.54 -18.68 4.18 -884.23 -3.70 -22.38 16 3 C 0.04 1.00 6.55 86.45 0.57 1.56 16 4 C -0.12 -3.21 6.93 31.47 0.22 -2.99 16 5 C -0.13 -4.05 6.42 31.80 0.20 -3.85 16 6 C 0.08 2.75 2.19 45.26 0.10 2.85 16 7 H 0.06 1.78 7.65 -2.39 -0.02 1.76 16 8 C -0.03 -1.36 1.89 -10.80 -0.02 -1.38 16 9 H 0.05 2.08 7.95 -2.38 -0.02 2.06 16 10 C 0.06 3.31 3.91 29.85 0.12 3.42 16 11 C -0.52 -29.14 7.63 25.60 0.20 -28.94 16 12 H 0.07 3.74 4.84 -2.91 -0.01 3.72 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.94 -58.73 13.29 21.45 0.28 -58.45 16 15 Si 0.94 45.38 29.54 68.60 2.03 47.41 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 C -0.15 -5.46 4.83 -10.79 -0.05 -5.52 16 20 C -0.17 -5.34 10.18 30.62 0.31 -5.03 16 21 C -0.19 -7.24 9.13 30.62 0.28 -6.96 16 22 H 0.07 1.84 7.89 -2.38 -0.02 1.82 16 23 H 0.06 1.93 6.07 -2.39 -0.01 1.91 16 24 H 0.04 1.10 7.56 -2.39 -0.02 1.08 16 25 H 0.06 1.35 7.77 -2.39 -0.02 1.33 16 26 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.05 2.04 6.23 -2.39 -0.01 2.02 16 30 H 0.08 2.26 8.14 -2.38 -0.02 2.25 16 31 H 0.00 -0.03 7.65 -2.39 -0.02 -0.05 16 32 H -0.02 -1.17 6.28 -2.39 -0.01 -1.19 16 33 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.10 3.78 4.40 -2.39 -0.01 3.77 16 35 H 0.09 2.67 8.09 -2.39 -0.02 2.66 16 36 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.09 4.06 4.90 -2.38 -0.01 4.05 16 Total: -1.00 -65.22 286.23 3.08 -62.14 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 1.02 Total: 16.07 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 3.45 Total: -44.78 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -3.41 Total: -80.83 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -65.22 3.08 -62.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.219 kcal (2) G-P(sol) polarization free energy of solvation -65.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds