Wall clock time and date at job start Mon Mar 30 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47482 * 110.99654 * 2 1 4 4 C 1.53515 * 87.93164 * 221.29938 * 3 2 1 5 5 C 1.53001 * 114.34436 * 139.68695 * 4 3 2 6 6 H 1.08993 * 109.46726 * 319.98778 * 5 4 3 7 7 C 1.53004 * 109.47167 * 79.98870 * 5 4 3 8 8 C 1.50697 * 109.46841 * 184.99911 * 7 5 4 9 9 H 1.07998 * 120.00045 * 0.02562 * 8 7 5 10 10 C 1.37884 * 119.99884 * 179.97438 * 8 7 5 11 11 N 1.31515 * 119.99722 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99913 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47251 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47038 * 120.00033 * 12 10 8 15 15 H 1.48504 * 109.46717 * 239.99814 * 12 10 8 16 16 C 1.52998 * 109.47049 * 199.98417 * 5 4 3 17 17 C 1.53777 * 113.61455 * 162.26987 * 16 5 4 18 18 C 1.53778 * 87.08354 * 220.02174 * 17 16 5 19 19 C 1.53785 * 87.08009 * 25.43583 * 18 17 16 20 20 C 1.47477 * 110.99896 * 264.03192 * 2 1 3 21 21 H 1.09005 * 109.46478 * 155.97193 * 1 2 3 22 22 H 1.08995 * 109.47243 * 275.96793 * 1 2 3 23 23 H 1.08997 * 109.47344 * 35.97401 * 1 2 3 24 24 H 1.09001 * 113.48043 * 336.06186 * 3 2 1 25 25 H 1.09005 * 113.47737 * 106.53223 * 3 2 1 26 26 H 1.09009 * 114.16555 * 272.37359 * 4 3 2 27 27 H 1.09003 * 109.46925 * 305.00269 * 7 5 4 28 28 H 1.08997 * 109.47063 * 64.99856 * 7 5 4 29 29 H 0.96995 * 119.99673 * 179.97438 * 11 10 8 30 30 H 1.08996 * 112.85263 * 293.58588 * 16 5 4 31 31 H 1.09004 * 113.61707 * 334.57001 * 17 16 5 32 32 H 1.09002 * 113.61436 * 105.47542 * 17 16 5 33 33 H 1.08995 * 113.61834 * 270.88162 * 18 17 16 34 34 H 1.09002 * 113.69002 * 139.98877 * 18 17 16 35 35 H 1.09003 * 113.60969 * 220.02043 * 19 18 17 36 36 H 1.08991 * 113.61483 * 89.11548 * 19 18 17 37 37 H 1.09002 * 113.47699 * 253.46366 * 20 2 1 38 38 H 1.09000 * 113.48378 * 23.93155 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3769 0.0000 4 6 3.0537 0.9122 -1.0125 5 6 3.3394 1.9159 -2.1314 6 1 2.4051 2.3738 -2.4559 7 6 4.2863 3.0007 -1.6139 8 6 4.4706 4.0545 -2.6751 9 1 3.9628 3.9603 -3.6236 10 6 5.2866 5.1396 -2.4348 11 7 5.9045 5.2546 -1.2795 12 14 5.5145 6.4464 -3.7500 13 1 4.7162 6.0862 -4.9493 14 1 5.0575 7.7593 -3.2278 15 1 6.9506 6.5328 -4.1183 16 6 3.9899 1.1921 -3.3120 17 6 3.9281 1.9831 -4.6293 18 6 3.6330 0.6451 -5.3275 19 6 3.0708 0.1569 -3.9819 20 6 1.9975 -0.1432 -1.3694 21 1 -0.3632 -0.9387 -0.4185 22 1 -0.3633 0.1068 1.0220 23 1 -0.3634 0.8316 -0.6036 24 1 1.3000 2.1098 -0.4056 25 1 2.4187 1.6804 0.9585 26 1 3.9572 0.5041 -0.5593 27 1 3.8623 3.4563 -0.7190 28 1 5.2514 2.5554 -1.3724 29 1 6.4789 6.0177 -1.1106 30 1 4.9826 0.8078 -3.0780 31 1 3.1007 2.6913 -4.6750 32 1 4.8815 2.4254 -4.9182 33 1 4.5286 0.1118 -5.6459 34 1 2.8817 0.7178 -6.1139 35 1 3.3323 -0.8751 -3.7481 36 1 2.0092 0.3658 -3.8506 37 1 2.4188 -1.1279 -1.5715 38 1 1.3001 0.1840 -2.1405 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260485805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:25 Heat of formation + Delta-G solvation = 40.530137 kcal Electronic energy + Delta-G solvation = -16065.051519 eV Core-core repulsion = 13715.695882 eV Total energy + Delta-G solvation = -2349.355636 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15275 -37.98086 -33.58365 -31.83129 -29.26236 -26.51594 -25.54292 -24.68984 -23.65912 -22.65814 -20.19178 -19.22590 -18.45197 -16.19587 -15.56045 -15.14402 -14.74454 -14.60604 -14.19409 -13.97853 -12.94761 -12.45983 -12.36744 -12.11762 -11.77565 -11.67642 -11.46029 -11.23434 -10.93664 -10.85399 -10.59961 -10.38347 -10.27302 -10.20822 -9.78869 -9.66567 -9.32842 -8.98304 -8.66337 -8.48139 -8.27077 -5.93782 -3.93717 3.32561 3.40884 3.43558 4.36903 4.50029 4.89101 5.09788 5.24960 5.27621 5.33267 5.41080 5.45426 5.53056 5.62863 5.73500 5.78901 5.89920 5.98153 6.08929 6.13279 6.18937 6.26824 6.32836 6.39151 6.48916 6.51176 6.60211 6.85683 6.87742 6.96888 7.17998 7.24946 7.34675 7.77071 7.88886 8.07701 8.51105 9.13419 9.69362 11.17915 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026332 B = 0.008780 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.073665 B = 3188.277736 C = 3961.063048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.486 5.486 3 C 0.004 3.996 4 C -0.100 4.100 5 C -0.061 4.061 6 H 0.055 0.945 7 C 0.030 3.970 8 C -0.513 4.513 9 H 0.066 0.934 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.883 3.117 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.286 1.286 16 C -0.080 4.080 17 C -0.114 4.114 18 C -0.154 4.154 19 C -0.142 4.142 20 C 0.001 3.999 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.033 0.967 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.257 0.743 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.573 -9.429 -2.608 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.208 5.208 3 C -0.124 4.124 4 C -0.119 4.119 5 C -0.080 4.080 6 H 0.073 0.927 7 C -0.006 4.006 8 C -0.551 4.551 9 H 0.084 0.916 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.711 3.289 13 H -0.198 1.198 14 H -0.213 1.213 15 H -0.212 1.212 16 C -0.098 4.098 17 C -0.151 4.151 18 C -0.192 4.192 19 C -0.179 4.179 20 C -0.128 4.128 21 H 0.081 0.919 22 H 0.084 0.916 23 H 0.052 0.948 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.323 -9.809 -1.968 12.398 hybrid contribution -0.190 1.404 -1.212 1.865 sum -7.513 -8.404 -3.180 11.713 Atomic orbital electron populations 1.22852 0.90597 1.00829 1.01740 1.68854 1.08370 1.20280 1.23317 1.23903 0.97431 0.90373 1.00739 1.22761 0.96533 0.95895 0.96670 1.21185 0.99445 0.94886 0.92491 0.92684 1.19073 0.93585 0.91854 0.96138 1.21525 1.26956 1.05532 1.01127 0.91552 1.25013 0.96207 0.98120 0.95201 1.69980 1.30998 1.30130 1.22621 0.86677 0.77822 0.82079 0.82291 1.19757 1.21258 1.21195 1.22266 0.98130 0.95068 0.94339 1.22831 1.02095 0.94708 0.95493 1.22960 1.00248 0.99463 0.96508 1.23093 0.99515 0.98600 0.96704 1.24010 0.97689 1.00470 0.90615 0.91922 0.91580 0.94786 0.91407 0.90128 0.88812 0.96736 0.96668 0.93299 0.90179 0.90426 0.91449 0.91106 0.92708 0.92594 0.90849 0.90543 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 9.69 60.07 0.58 0.45 16 2 N -0.49 -7.35 6.73 -252.98 -1.70 -9.05 16 3 C 0.00 0.07 7.21 -7.55 -0.05 0.01 16 4 C -0.10 -1.69 3.38 -90.09 -0.30 -2.00 16 5 C -0.06 -1.18 1.49 -90.62 -0.14 -1.31 16 6 H 0.05 1.09 7.94 -51.93 -0.41 0.68 16 7 C 0.03 0.75 4.43 -27.88 -0.12 0.63 16 8 C -0.51 -13.73 8.16 -34.44 -0.28 -14.01 16 9 H 0.07 1.70 4.86 -52.49 -0.26 1.44 16 10 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 11 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 12 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 C -0.08 -1.41 3.02 -89.81 -0.27 -1.68 16 17 C -0.11 -2.04 5.29 -25.92 -0.14 -2.18 16 18 C -0.15 -2.26 8.08 -25.92 -0.21 -2.47 16 19 C -0.14 -2.06 5.67 -25.91 -0.15 -2.21 16 20 C 0.00 0.01 5.31 -7.55 -0.04 -0.03 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.42 7.52 -51.93 -0.39 0.03 16 24 H 0.07 1.11 7.43 -51.93 -0.39 0.72 16 25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 27 H 0.01 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.08 1.45 7.09 -51.93 -0.37 1.09 16 32 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 36 H 0.07 1.04 6.42 -51.93 -0.33 0.70 16 37 H 0.08 1.06 8.05 -51.93 -0.42 0.65 16 38 H 0.07 0.94 6.25 -51.93 -0.32 0.62 16 LS Contribution 291.27 15.07 4.39 4.39 Total: -1.00 -28.46 291.27 -9.48 -37.94 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.66 Total: -0.36 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -1.22 Total: -23.36 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.97 Total: -35.01 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.46 -9.48 -37.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.472 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds