Wall clock time and date at job start Mon Mar 30 2020 02:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35030 * 1 3 3 C 1.40072 * 120.00110 * 2 1 4 4 H 1.07996 * 119.99693 * 149.16709 * 3 2 1 5 5 C 1.40310 * 120.00328 * 329.17683 * 3 2 1 6 6 N 1.30689 * 119.99700 * 347.08259 * 5 3 2 7 7 Si 1.86799 * 120.00393 * 167.08323 * 5 3 2 8 8 H 1.48506 * 109.46764 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.46958 * 119.99692 * 7 5 3 10 10 H 1.48502 * 109.47052 * 240.00253 * 7 5 3 11 11 C 1.50700 * 120.00193 * 180.02562 * 2 1 3 12 12 C 1.53010 * 109.47156 * 93.68779 * 11 2 1 13 13 H 1.08996 * 109.46286 * 304.03623 * 12 11 2 14 14 C 1.53035 * 109.46117 * 64.01473 * 12 11 2 15 15 C 1.53114 * 109.27960 * 179.20570 * 14 12 11 16 16 C 1.53120 * 109.14911 * 302.33125 * 15 14 12 17 17 C 1.53031 * 109.28198 * 57.65697 * 16 15 14 18 18 N 1.46845 * 109.45777 * 184.05599 * 12 11 2 19 19 C 1.46903 * 111.00465 * 54.14904 * 18 12 11 20 20 C 1.52992 * 109.47388 * 187.63961 * 19 18 12 21 21 H 1.07996 * 120.00379 * 354.83676 * 1 2 3 22 22 H 1.08004 * 119.99923 * 174.84085 * 1 2 3 23 23 H 0.97001 * 120.00381 * 180.02562 * 6 5 3 24 24 H 1.09002 * 109.46898 * 333.69406 * 11 2 1 25 25 H 1.08995 * 109.47298 * 213.68741 * 11 2 1 26 26 H 1.09000 * 109.50269 * 299.13879 * 14 12 11 27 27 H 1.09008 * 109.50377 * 59.25152 * 14 12 11 28 28 H 1.08995 * 109.52216 * 182.43164 * 15 14 12 29 29 H 1.08999 * 109.58546 * 62.26472 * 15 14 12 30 30 H 1.09000 * 109.50164 * 297.71477 * 16 15 14 31 31 H 1.09006 * 109.53704 * 177.62391 * 16 15 14 32 32 H 1.09006 * 109.46768 * 180.80087 * 17 16 15 33 33 H 1.09006 * 109.45185 * 60.83134 * 17 16 15 34 34 H 1.09005 * 109.46709 * 307.64623 * 19 18 12 35 35 H 1.09003 * 109.47000 * 67.63692 * 19 18 12 36 36 H 1.08997 * 109.47501 * 300.00237 * 20 19 18 37 37 H 1.09003 * 109.47270 * 59.99896 * 20 19 18 38 38 H 1.08994 * 109.47341 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0162 1.2791 0.4794 5 6 1.4979 2.3424 -0.6226 6 7 0.4647 2.2130 -1.4125 7 14 2.2385 4.0309 -0.3226 8 1 3.3919 3.9077 0.6047 9 1 2.6986 4.6058 -1.6121 10 1 1.2134 4.9213 0.2788 11 6 2.1038 -1.3051 -0.0006 12 6 2.4392 -1.6997 -1.4404 13 1 1.5224 -1.7424 -2.0282 14 6 3.3856 -0.6610 -2.0465 15 6 3.7342 -1.0703 -3.4801 16 6 4.3633 -2.4662 -3.4651 17 6 3.3888 -3.4527 -2.8177 18 7 3.0873 -3.0174 -1.4481 19 6 2.2643 -4.0131 -0.7484 20 6 3.0504 -5.3183 -0.6102 21 1 -0.5400 0.9314 0.0842 22 1 -0.5400 -0.9316 -0.0841 23 1 0.0827 2.9937 -1.8432 24 1 1.4877 -2.0806 0.4545 25 1 3.0260 -1.1924 0.5694 26 1 2.8985 0.3141 -2.0548 27 1 4.2972 -0.6080 -1.4511 28 1 4.4420 -0.3563 -3.9009 29 1 2.8284 -1.0856 -4.0862 30 1 5.2903 -2.4414 -2.8922 31 1 4.5754 -2.7815 -4.4868 32 1 3.8395 -4.4450 -2.7925 33 1 2.4674 -3.4871 -3.3991 34 1 2.0047 -3.6386 0.2418 35 1 1.3531 -4.1962 -1.3180 36 1 3.3100 -5.6927 -1.6004 37 1 3.9616 -5.1352 -0.0407 38 1 2.4400 -6.0568 -0.0907 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260501598.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:42 Heat of formation + Delta-G solvation = -14.997960 kcal Electronic energy + Delta-G solvation = -16187.256357 eV Core-core repulsion = 13835.492842 eV Total energy + Delta-G solvation = -2351.763515 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40376 -36.95289 -35.15835 -34.10092 -31.39393 -30.51555 -27.60155 -26.73790 -25.30983 -22.91877 -22.03461 -20.92646 -20.25037 -17.76342 -16.98499 -16.89737 -15.94022 -15.48025 -15.39838 -15.08665 -14.50196 -14.29877 -14.17349 -13.86236 -13.56785 -13.04636 -12.84436 -12.62744 -12.57458 -12.52350 -12.26298 -11.96935 -11.87533 -11.65524 -11.50433 -11.30036 -11.06169 -10.94666 -10.74833 -9.22491 -9.20706 -8.41078 -6.18463 1.30797 1.39904 1.52773 2.08638 2.31511 2.97444 3.38468 3.95641 3.99623 4.05407 4.17064 4.34167 4.41703 4.53066 4.57917 4.66686 4.71631 4.78705 4.84608 4.97101 5.00653 5.07938 5.11621 5.15961 5.22840 5.26184 5.31257 5.35200 5.41300 5.50693 5.53875 5.66456 6.10048 6.25615 6.31997 6.33849 6.95082 7.20079 7.42204 8.60642 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033472 B = 0.008491 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.324184 B = 3296.782642 C = 3776.119097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.365 4.365 2 C 0.036 3.964 3 C -0.489 4.489 4 H 0.062 0.938 5 C 0.033 3.967 6 N -0.839 5.839 7 Si 0.962 3.038 8 H -0.258 1.258 9 H -0.270 1.270 10 H -0.274 1.274 11 C -0.067 4.067 12 C 0.117 3.883 13 H 0.001 0.999 14 C -0.102 4.102 15 C -0.120 4.120 16 C -0.107 4.107 17 C 0.051 3.949 18 N -0.536 5.536 19 C 0.038 3.962 20 C -0.136 4.136 21 H 0.058 0.942 22 H 0.040 0.960 23 H 0.274 0.726 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.017 0.983 34 H 0.070 0.930 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 -9.443 -3.424 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.406 4.406 2 C 0.034 3.966 3 C -0.521 4.521 4 H 0.080 0.920 5 C -0.179 4.179 6 N -0.468 5.468 7 Si 0.785 3.215 8 H -0.181 1.181 9 H -0.195 1.195 10 H -0.199 1.199 11 C -0.105 4.105 12 C 0.009 3.991 13 H 0.019 0.981 14 C -0.140 4.140 15 C -0.158 4.158 16 C -0.145 4.145 17 C -0.076 4.076 18 N -0.262 5.262 19 C -0.090 4.090 20 C -0.193 4.193 21 H 0.077 0.923 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.035 0.965 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.933 -9.304 -3.327 12.671 hybrid contribution -1.219 1.027 -0.358 1.634 sum 6.713 -8.276 -3.685 11.276 Atomic orbital electron populations 1.23081 0.95357 0.95953 1.26168 1.18706 0.92874 0.92807 0.92229 1.19285 1.04231 0.95054 1.33507 0.91991 1.26548 0.94781 1.03748 0.92782 1.69920 1.21821 1.31920 1.23109 0.85463 0.79087 0.77997 0.78966 1.18147 1.19463 1.19944 1.20705 0.98741 0.95358 0.95687 1.21169 0.93688 0.89084 0.95138 0.98061 1.21516 0.98561 0.98206 0.95694 1.21605 1.00027 0.98097 0.96074 1.21561 0.98492 0.93420 1.00996 1.22232 0.97884 0.99842 0.87676 1.62076 1.45577 1.01629 1.16870 1.22254 0.94492 0.93382 0.98863 1.21738 1.00482 0.94735 1.02384 0.92319 0.94160 0.91549 0.93066 0.92481 0.92346 0.92307 0.91189 0.93930 0.90937 0.89569 0.88410 0.96473 0.91160 0.96305 0.91862 0.91963 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.36 -21.09 12.89 67.08 0.86 -20.22 16 2 C 0.04 1.95 4.54 -20.16 -0.09 1.86 16 3 C -0.49 -26.97 6.98 23.22 0.16 -26.81 16 4 H 0.06 3.33 7.88 -2.91 -0.02 3.31 16 5 C 0.03 1.78 5.14 85.37 0.44 2.22 16 6 N -0.84 -47.63 11.18 21.89 0.24 -47.38 16 7 Si 0.96 41.21 29.58 68.60 2.03 43.24 16 8 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 C -0.07 -3.07 4.59 29.85 0.14 -2.93 16 12 C 0.12 4.89 1.91 44.94 0.09 4.98 16 13 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 14 C -0.10 -4.18 4.86 30.64 0.15 -4.04 16 15 C -0.12 -3.98 6.00 30.67 0.18 -3.80 16 16 C -0.11 -2.83 6.09 30.64 0.19 -2.64 16 17 C 0.05 1.43 5.27 86.32 0.46 1.89 16 18 N -0.54 -17.97 4.51 -871.09 -3.93 -21.90 16 19 C 0.04 1.14 5.36 86.30 0.46 1.60 16 20 C -0.14 -3.01 9.78 71.98 0.70 -2.30 16 21 H 0.06 3.65 6.53 -2.91 -0.02 3.63 16 22 H 0.04 2.22 8.06 -2.91 -0.02 2.19 16 23 H 0.27 14.36 8.29 -92.71 -0.77 13.59 16 24 H 0.05 2.23 5.84 -2.39 -0.01 2.21 16 25 H 0.06 2.55 8.11 -2.39 -0.02 2.53 16 26 H 0.06 2.88 6.11 -2.39 -0.01 2.86 16 27 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.10 2.22 6.12 -2.38 -0.01 2.20 16 33 H 0.02 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.07 2.28 5.69 -2.38 -0.01 2.27 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 1.24 6.36 -2.39 -0.02 1.23 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -61.11 290.43 3.08 -58.02 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.00 Total: 18.21 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 3.74 Total: -50.20 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: -3.68 Total: -69.28 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -61.11 3.08 -58.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501598.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.027 kcal (2) G-P(sol) polarization free energy of solvation -61.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds