Wall clock time and date at job start Mon Mar 30 2020 02:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47285 * 2 1 4 4 C 1.50697 * 109.46923 * 240.00220 * 2 1 3 5 5 H 1.08003 * 119.99911 * 275.48875 * 4 2 1 6 6 C 1.37877 * 120.00282 * 95.49877 * 4 2 1 7 7 N 1.31522 * 119.99648 * 2.98886 * 6 4 2 8 8 Si 1.86801 * 120.00343 * 182.99280 * 6 4 2 9 9 H 1.48500 * 109.47131 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.46930 * 299.99979 * 8 6 4 11 11 H 1.48504 * 109.47072 * 59.99726 * 8 6 4 12 12 C 1.53004 * 109.47012 * 120.00139 * 2 1 3 13 13 H 1.09004 * 115.55349 * 41.15361 * 12 2 1 14 14 C 1.53045 * 117.50674 * 255.39306 * 12 2 1 15 15 C 1.52740 * 59.94610 * 252.53177 * 14 12 2 16 16 C 1.53217 * 117.83693 * 107.73054 * 15 14 12 17 17 C 1.53253 * 108.62621 * 196.98579 * 16 15 14 18 18 N 1.46815 * 109.44984 * 304.43640 * 17 16 15 19 19 C 1.46902 * 110.99946 * 189.19630 * 18 17 16 20 20 C 1.46797 * 111.58683 * 64.81426 * 18 17 16 21 21 C 1.53211 * 117.84061 * 252.26806 * 15 14 12 22 22 H 1.08998 * 109.46742 * 304.78475 * 1 2 3 23 23 H 1.09002 * 109.46958 * 64.78674 * 1 2 3 24 24 H 1.09004 * 109.47213 * 184.78861 * 1 2 3 25 25 H 0.96994 * 120.00036 * 353.84206 * 7 6 4 26 26 H 1.09000 * 117.50413 * 0.02562 * 14 12 2 27 27 H 1.09000 * 117.50532 * 145.05725 * 14 12 2 28 28 H 1.08997 * 109.61191 * 316.73003 * 16 15 14 29 29 H 1.09006 * 109.60781 * 77.24277 * 16 15 14 30 30 H 1.08996 * 109.47896 * 184.44206 * 17 16 15 31 31 H 1.09000 * 109.47528 * 64.42409 * 17 16 15 32 32 H 1.08994 * 109.47640 * 295.28571 * 19 18 17 33 33 H 1.09006 * 109.47358 * 55.29000 * 19 18 17 34 34 H 1.09007 * 109.46833 * 175.28587 * 19 18 17 35 35 H 1.09003 * 109.47809 * 175.18870 * 20 18 17 36 36 H 1.09005 * 109.47557 * 55.17567 * 20 18 17 37 37 H 1.09006 * 109.60968 * 282.75433 * 21 15 14 38 38 H 1.09004 * 109.61381 * 43.27140 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1279 -1.7861 -1.2317 6 6 2.3699 0.0130 -2.3546 7 7 2.3098 1.3267 -2.3338 8 14 2.9128 -0.8726 -3.9072 9 1 3.2170 0.1242 -4.9650 10 1 4.1278 -1.6763 -3.6194 11 1 1.8243 -1.7699 -4.3715 12 6 2.0400 -0.7213 1.2493 13 1 1.4986 -1.6268 1.5233 14 6 2.5983 0.1401 2.3844 15 6 3.5436 -0.6897 1.5178 16 6 4.4326 0.0531 0.5152 17 6 4.9605 -0.9548 -0.5115 18 7 5.6503 -2.0472 0.1859 19 6 6.3561 -2.9163 -0.7653 20 6 4.7260 -2.8232 1.0216 21 6 4.1833 -1.9327 2.1447 22 1 -0.3633 0.5863 0.8440 23 1 -0.3633 0.4378 -0.9298 24 1 -0.3634 -1.0241 0.0858 25 1 1.9438 1.7832 -1.5602 26 1 2.6019 1.2207 2.2413 27 1 2.4241 -0.1984 3.4057 28 1 3.8490 0.8210 0.0074 29 1 5.2699 0.5136 1.0398 30 1 5.6575 -0.4563 -1.1850 31 1 4.1268 -1.3593 -1.0854 32 1 5.6316 -3.4110 -1.4121 33 1 7.0343 -2.3159 -1.3718 34 1 6.9262 -3.6668 -0.2176 35 1 5.2537 -3.6731 1.4545 36 1 3.8979 -3.1825 0.4105 37 1 5.0005 -1.6322 2.8006 38 1 3.4345 -2.4807 2.7167 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260526023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:20 Heat of formation + Delta-G solvation = 11.358434 kcal Electronic energy + Delta-G solvation = -16766.911798 eV Core-core repulsion = 14416.291182 eV Total energy + Delta-G solvation = -2350.620616 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.13627 -36.14970 -33.63479 -30.71150 -30.19118 -29.03331 -24.78277 -24.64864 -22.83089 -22.09588 -20.80898 -19.76772 -17.64341 -16.37829 -15.23960 -14.46658 -14.20084 -14.06722 -13.81298 -13.65185 -13.01615 -12.75348 -12.17006 -11.78706 -11.69672 -11.38672 -11.28742 -11.13438 -10.92074 -10.87561 -10.67523 -10.43474 -10.21838 -10.11884 -9.81536 -9.18236 -9.11766 -8.71785 -8.31727 -8.15045 -7.62019 -6.29954 -3.96582 3.38450 3.41313 3.58646 4.45886 4.53537 4.69902 5.29605 5.38920 5.47875 5.63252 5.68208 5.73137 5.87370 5.97749 6.04067 6.15418 6.19717 6.28902 6.32001 6.37166 6.51946 6.54998 6.56295 6.60691 6.70243 6.77039 6.95904 7.01494 7.08780 7.20839 7.28930 7.44222 7.68292 7.69502 7.80291 8.29319 8.45844 8.91711 9.68187 11.07004 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.020553 B = 0.015546 C = 0.010248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.009428 B = 1800.641321 C = 2731.671207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.567 4.567 5 H 0.044 0.956 6 C 0.026 3.974 7 N -0.914 5.914 8 Si 1.048 2.952 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.289 1.289 12 C -0.106 4.106 13 H 0.078 0.922 14 C -0.196 4.196 15 C -0.110 4.110 16 C -0.058 4.058 17 C 0.049 3.951 18 N -0.550 5.550 19 C 0.028 3.972 20 C 0.064 3.936 21 C -0.072 4.072 22 H 0.017 0.983 23 H 0.042 0.958 24 H 0.033 0.967 25 H 0.270 0.730 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.021 0.979 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.965 -5.604 5.601 8.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.029 3.971 3 H 0.058 0.942 4 C -0.606 4.606 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.877 3.123 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.216 1.216 12 C -0.125 4.125 13 H 0.097 0.903 14 C -0.233 4.233 15 C -0.110 4.110 16 C -0.096 4.096 17 C -0.078 4.078 18 N -0.275 5.275 19 C -0.121 4.121 20 C -0.064 4.064 21 C -0.110 4.110 22 H 0.036 0.964 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.890 -5.138 4.352 8.321 hybrid contribution -1.218 -0.730 1.058 1.770 sum 3.672 -5.868 5.409 8.785 Atomic orbital electron populations 1.21890 0.99722 0.98814 0.98460 1.18586 0.91031 0.96165 0.91303 0.94201 1.21666 1.46983 0.94239 0.97684 0.93804 1.25535 0.95374 0.96079 1.00851 1.70799 1.42966 1.07794 1.33592 0.83862 0.76463 0.75342 0.76585 1.20747 1.21395 1.21579 1.22588 0.94205 0.99201 0.96486 0.90335 1.23093 1.06959 0.97879 0.95332 1.21277 0.92356 0.97410 0.99995 1.20927 0.96671 0.97240 0.94721 1.22450 0.97891 0.91700 0.95728 1.61827 1.30397 1.11693 1.23575 1.22271 0.97982 0.96606 0.95203 1.21946 0.94309 0.95042 0.95077 1.21112 0.98773 0.94714 0.96408 0.96405 0.93909 0.94795 0.91812 0.89821 0.90586 0.89872 0.93847 0.92693 0.89722 0.96031 0.91929 0.92355 0.92193 0.94674 0.91922 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.18 37.16 0.34 -2.58 16 2 C 0.05 1.13 1.68 -91.77 -0.15 0.98 16 3 H 0.04 1.02 5.02 -51.93 -0.26 0.76 16 4 C -0.57 -14.57 4.78 -34.44 -0.16 -14.73 16 5 H 0.04 1.17 7.50 -52.48 -0.39 0.78 16 6 C 0.03 0.68 5.05 -17.82 -0.09 0.59 16 7 N -0.91 -25.99 13.62 55.43 0.75 -25.24 16 8 Si 1.05 24.43 29.29 -169.99 -4.98 19.45 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 C -0.11 -2.21 4.74 -90.71 -0.43 -2.64 16 13 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 14 C -0.20 -3.63 9.65 -26.84 -0.26 -3.89 16 15 C -0.11 -2.15 1.95 -154.54 -0.30 -2.45 16 16 C -0.06 -1.22 5.09 -26.49 -0.13 -1.36 16 17 C 0.05 1.02 5.21 -3.74 -0.02 1.00 16 18 N -0.55 -10.11 4.84 -242.74 -1.17 -11.28 16 19 C 0.03 0.45 9.57 60.07 0.57 1.02 16 20 C 0.06 1.11 5.49 -3.75 -0.02 1.09 16 21 C -0.07 -1.23 5.87 -26.49 -0.16 -1.39 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.27 7.69 6.49 -40.82 -0.26 7.42 16 26 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.08 1.99 6.03 -51.93 -0.31 1.68 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 1.16 8.02 -51.93 -0.42 0.74 16 31 H 0.08 2.00 4.14 -51.93 -0.21 1.78 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.03 0.67 8.12 -51.93 -0.42 0.25 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 LS Contribution 288.19 15.07 4.34 4.34 Total: -1.00 -26.87 288.19 -8.43 -35.30 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.56 Total: 1.78 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -0.81 Total: -24.35 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.42 Total: -36.52 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -4.98 Total: 19.45 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.87 -8.43 -35.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260526023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.658 kcal (2) G-P(sol) polarization free energy of solvation -26.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds