Wall clock time and date at job start Mon Mar 30 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46847 * 110.99972 * 2 1 4 4 C 1.53046 * 109.52299 * 174.16257 * 3 2 1 5 5 C 1.53115 * 109.27657 * 59.17990 * 4 3 2 6 6 C 1.53120 * 109.16336 * 302.34238 * 5 4 3 7 7 H 1.09004 * 109.53661 * 297.69931 * 6 5 4 8 8 C 1.52996 * 109.50669 * 177.59445 * 6 5 4 9 9 H 1.08996 * 109.47517 * 300.20177 * 8 6 5 10 10 C 1.50699 * 109.47487 * 180.19700 * 8 6 5 11 11 H 1.07995 * 120.00221 * 294.98896 * 10 8 6 12 12 C 1.37882 * 119.99653 * 114.97704 * 10 8 6 13 13 N 1.31514 * 119.99423 * 184.81548 * 12 10 8 14 14 Si 1.86797 * 120.00116 * 4.82113 * 12 10 8 15 15 H 1.48504 * 109.46965 * 84.69322 * 14 12 10 16 16 H 1.48493 * 109.46971 * 204.69041 * 14 12 10 17 17 H 1.48500 * 109.47145 * 324.69470 * 14 12 10 18 18 C 1.53010 * 109.46934 * 60.20052 * 8 6 5 19 19 C 1.52994 * 117.49792 * 253.66429 * 18 8 6 20 20 C 1.52998 * 117.49853 * 185.03921 * 18 8 6 21 21 C 1.46852 * 111.00188 * 235.79069 * 2 1 3 22 22 H 1.08999 * 109.47354 * 184.21325 * 1 2 3 23 23 H 1.09007 * 109.47174 * 304.20838 * 1 2 3 24 24 H 1.08999 * 109.47551 * 64.20741 * 1 2 3 25 25 H 1.09000 * 109.46754 * 294.17676 * 3 2 1 26 26 H 1.08998 * 109.46348 * 54.15735 * 3 2 1 27 27 H 1.08999 * 109.50347 * 179.12274 * 4 3 2 28 28 H 1.09006 * 109.50010 * 299.19822 * 4 3 2 29 29 H 1.09001 * 109.52176 * 182.44247 * 5 4 3 30 30 H 1.09002 * 109.52767 * 62.25305 * 5 4 3 31 31 H 0.97008 * 119.99563 * 180.02562 * 13 12 10 32 32 H 1.08998 * 115.54517 * 39.37059 * 18 8 6 33 33 H 1.08997 * 117.50111 * 359.97438 * 19 18 8 34 34 H 1.08996 * 117.50249 * 145.02262 * 19 18 8 35 35 H 1.08998 * 117.49285 * 214.97891 * 20 18 8 36 36 H 1.09000 * 117.50187 * 359.97438 * 20 18 8 37 37 H 1.09006 * 109.45717 * 65.81833 * 21 2 1 38 38 H 1.09000 * 109.45888 * 305.85608 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1187 0.5370 -1.0144 6 6 3.5181 -0.8715 -1.0209 7 1 3.7813 -1.3842 -0.0957 8 6 4.0679 -1.6558 -2.2139 9 1 3.8056 -1.1419 -3.1387 10 6 3.4726 -3.0402 -2.2224 11 1 3.6951 -3.7286 -1.4205 12 6 2.6438 -3.4279 -3.2538 13 7 2.0491 -4.6003 -3.2141 14 14 2.3657 -2.2882 -4.7074 15 1 3.4578 -2.4723 -5.6968 16 1 1.0625 -2.6066 -5.3439 17 1 2.3561 -0.8796 -4.2372 18 6 5.5905 -1.7561 -2.1004 19 6 6.4277 -0.8924 -3.0458 20 6 6.3444 -2.4046 -3.2631 21 6 1.9952 -0.7708 -1.1338 22 1 -0.3634 -1.0249 0.0755 23 1 -0.3634 0.5778 0.8499 24 1 -0.3634 0.4471 -0.9252 25 1 1.7324 1.8609 -0.9375 26 1 1.5635 1.9257 0.8331 27 1 3.9099 2.3512 0.1310 28 1 3.7813 0.8573 1.0909 29 1 5.1997 0.4714 -0.8906 30 1 3.8886 1.0355 -1.9561 31 1 1.4662 -4.8732 -3.9400 32 1 5.9769 -1.9221 -1.0948 33 1 5.8940 -0.2531 -3.7490 34 1 7.3653 -0.4900 -2.6624 35 1 7.2271 -2.9970 -3.0224 36 1 5.7557 -2.7603 -4.1087 37 1 1.7323 -0.2708 -2.0660 38 1 1.5634 -1.7715 -1.1242 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260545877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:51 Heat of formation + Delta-G solvation = 10.485289 kcal Electronic energy + Delta-G solvation = -16385.549961 eV Core-core repulsion = 14034.891483 eV Total energy + Delta-G solvation = -2350.658479 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.79680 -36.69363 -33.34536 -32.54146 -30.97644 -27.33145 -26.29780 -23.65501 -22.08245 -21.56023 -21.25992 -19.12186 -18.88405 -16.85681 -15.36122 -14.78855 -14.51856 -14.20519 -14.01926 -13.70256 -13.15222 -12.84910 -12.45363 -12.23836 -11.93386 -11.64258 -11.47019 -11.20138 -10.96192 -10.75679 -10.64435 -10.37975 -10.21190 -9.96018 -9.62543 -9.58441 -9.20499 -9.06755 -8.59014 -8.39578 -7.81433 -6.05317 -4.00940 3.25525 3.34120 3.35455 4.41184 4.44072 4.73963 5.21440 5.32067 5.38363 5.49076 5.56163 5.70675 5.80401 5.82572 5.88007 5.92028 6.03352 6.11371 6.18706 6.21975 6.24940 6.32415 6.44485 6.48815 6.57471 6.60819 6.69838 6.90423 6.90707 7.00955 7.12212 7.32131 7.49350 7.63086 7.69173 7.80257 8.57847 9.02834 9.58433 11.08460 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.013038 C = 0.009416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.879340 B = 2147.133564 C = 2972.914315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.545 5.545 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.064 4.064 7 H 0.068 0.932 8 C 0.039 3.961 9 H 0.037 0.963 10 C -0.492 4.492 11 H 0.074 0.926 12 C 0.073 3.927 13 N -0.901 5.901 14 Si 0.864 3.136 15 H -0.276 1.276 16 H -0.291 1.291 17 H -0.265 1.265 18 C -0.111 4.111 19 C -0.207 4.207 20 C -0.173 4.173 21 C 0.069 3.931 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.017 0.983 25 H 0.024 0.976 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.262 0.738 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.019 0.981 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 10.706 3.553 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.083 4.083 7 H 0.086 0.914 8 C 0.020 3.980 9 H 0.055 0.945 10 C -0.530 4.530 11 H 0.092 0.908 12 C -0.127 4.127 13 N -0.540 5.540 14 Si 0.692 3.308 15 H -0.202 1.202 16 H -0.218 1.218 17 H -0.190 1.190 18 C -0.129 4.129 19 C -0.244 4.244 20 C -0.210 4.210 21 C -0.058 4.058 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.037 0.963 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.858 10.344 3.875 11.201 hybrid contribution -0.498 0.915 -1.729 2.018 sum 1.359 11.258 2.147 11.541 Atomic orbital electron populations 1.22302 0.88291 1.02159 0.99361 1.61977 1.06770 1.12841 1.45376 1.22048 0.95972 0.89910 0.99234 1.21590 0.94358 0.99343 1.00021 1.21734 0.99966 0.96978 0.96916 1.21216 0.93027 0.93411 1.00691 0.91405 1.18969 0.88862 0.96236 0.93943 0.94508 1.20877 1.26729 0.96776 1.08596 0.90770 1.25014 0.95398 0.94762 0.97558 1.69897 1.30900 1.20411 1.32762 0.87106 0.77643 0.82124 0.83919 1.20223 1.21779 1.19008 1.22447 0.96082 1.00725 0.93665 1.23013 1.01850 0.94094 1.05424 1.22713 1.02066 0.93631 1.02560 1.22177 0.96445 0.98406 0.88769 0.91228 0.92231 0.96394 0.95794 0.91846 0.92646 0.91465 0.91947 0.93362 0.92807 0.89472 0.90128 0.90410 0.90277 0.89189 0.96304 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.59 60.06 0.58 1.00 16 2 N -0.55 -9.71 4.91 -242.95 -1.19 -10.90 16 3 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 4 C -0.12 -1.71 6.09 -26.65 -0.16 -1.88 16 5 C -0.12 -2.02 4.99 -26.61 -0.13 -2.15 16 6 C -0.06 -1.30 1.93 -90.54 -0.17 -1.47 16 7 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 8 C 0.04 0.88 1.45 -91.77 -0.13 0.75 16 9 H 0.04 0.87 4.31 -51.93 -0.22 0.64 16 10 C -0.49 -13.09 7.39 -34.44 -0.25 -13.35 16 11 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 14 Si 0.86 21.28 27.24 -169.99 -4.63 16.64 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.26 -6.29 6.16 56.52 0.35 -5.94 16 18 C -0.11 -2.21 3.90 -90.62 -0.35 -2.56 16 19 C -0.21 -3.62 10.00 -26.73 -0.27 -3.89 16 20 C -0.17 -3.36 10.00 -26.73 -0.27 -3.63 16 21 C 0.07 1.42 4.48 -3.83 -0.02 1.41 16 22 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.01 7.16 -51.93 -0.37 0.64 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.08 1.42 8.08 -51.93 -0.42 1.00 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 37 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16 38 H 0.09 2.21 7.23 -51.93 -0.38 1.84 16 LS Contribution 294.06 15.07 4.43 4.43 Total: -1.00 -28.17 294.06 -8.83 -37.00 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.90 Total: 1.92 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -1.31 Total: -22.98 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.42 Total: -37.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.63 Total: 16.64 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.17 -8.83 -37.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.484 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds