Wall clock time and date at job start Mon Mar 30 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46414 * 110.99762 * 2 1 4 4 C 1.52021 * 111.92715 * 206.39384 * 3 2 1 5 5 C 1.54641 * 110.57262 * 267.23186 * 4 3 2 6 6 C 1.51484 * 111.87906 * 41.55930 * 5 4 3 7 7 H 1.08999 * 109.16683 * 280.72365 * 6 5 4 8 8 C 1.50708 * 109.33862 * 161.17064 * 6 5 4 9 9 H 1.07998 * 119.99632 * 239.10800 * 8 6 5 10 10 C 1.37869 * 119.99888 * 59.10649 * 8 6 5 11 11 N 1.31510 * 120.00484 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99768 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47118 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47303 * 120.00062 * 12 10 8 15 15 H 1.48503 * 109.47452 * 240.00200 * 12 10 8 16 16 C 1.52525 * 110.33773 * 40.89411 * 6 5 4 17 17 H 1.08994 * 112.15802 * 20.25713 * 16 6 5 18 18 C 1.53490 * 111.64056 * 146.17666 * 16 6 5 19 19 C 1.54124 * 106.49613 * 138.44941 * 18 16 6 20 20 C 1.54533 * 106.55178 * 358.99757 * 19 18 16 21 21 C 1.43591 * 110.99865 * 130.48441 * 2 1 3 22 22 H 1.09003 * 111.08408 * 293.50548 * 21 2 1 23 23 H 1.08999 * 109.47036 * 56.04830 * 1 2 3 24 24 H 1.08996 * 109.46726 * 176.04728 * 1 2 3 25 25 H 1.08996 * 109.46958 * 296.04980 * 1 2 3 26 26 H 1.09005 * 108.98832 * 85.76109 * 3 2 1 27 27 H 1.08996 * 108.98709 * 327.02157 * 3 2 1 28 28 H 1.09002 * 109.25228 * 27.50502 * 4 3 2 29 29 H 1.09004 * 109.24788 * 146.96286 * 4 3 2 30 30 H 1.09004 * 109.01395 * 162.14390 * 5 4 3 31 31 H 1.09005 * 109.01557 * 280.93181 * 5 4 3 32 32 H 0.97000 * 120.00321 * 180.02562 * 11 10 8 33 33 H 1.08999 * 110.05603 * 19.19301 * 18 16 6 34 34 H 1.09004 * 110.09685 * 257.72867 * 18 16 6 35 35 H 1.08998 * 110.04480 * 239.72670 * 19 18 16 36 36 H 1.09000 * 110.04416 * 118.26763 * 19 18 16 37 37 H 1.09003 * 110.51596 * 217.58451 * 20 19 18 38 38 H 1.08999 * 110.51327 * 94.87498 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9937 1.3669 0.0000 4 6 3.3765 1.4443 -0.6269 5 6 4.4723 1.3105 0.4560 6 6 4.1301 0.2448 1.4768 7 1 3.4122 0.6498 2.1899 8 6 5.3821 -0.1659 2.2083 9 1 5.7099 -1.1946 2.1820 10 6 6.1089 0.7716 2.9109 11 7 5.7100 2.0243 2.9425 12 14 7.6611 0.2626 3.8170 13 1 7.8915 -1.1920 3.6258 14 1 8.8189 1.0223 3.2810 15 1 7.5066 0.5525 5.2653 16 6 3.5250 -0.9741 0.7880 17 1 3.7699 -1.0104 -0.2734 18 6 3.9143 -2.2775 1.4991 19 6 2.6472 -3.1543 1.5304 20 6 1.5262 -2.3322 0.8554 21 6 1.9836 -0.8703 1.0196 22 1 1.7454 -0.4930 2.0141 23 1 -0.3633 0.5739 -0.8524 24 1 -0.3632 -1.0252 -0.0708 25 1 -0.3633 0.4513 0.9232 26 1 2.0497 1.7253 1.0279 27 1 1.3136 2.0078 -0.5610 28 1 3.4878 0.6383 -1.3523 29 1 3.4878 2.4025 -1.1344 30 1 5.4161 1.0513 -0.0240 31 1 4.5862 2.2670 0.9661 32 1 6.2216 2.6839 3.4365 33 1 4.2463 -2.0642 2.5152 34 1 4.7056 -2.7838 0.9462 35 1 2.3751 -3.3810 2.5612 36 1 2.8181 -4.0777 0.9770 37 1 0.5752 -2.4942 1.3628 38 1 1.4456 -2.5909 -0.2004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260554902.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:20 Heat of formation + Delta-G solvation = -22.096112 kcal Electronic energy + Delta-G solvation = -16709.561754 eV Core-core repulsion = 14357.490439 eV Total energy + Delta-G solvation = -2352.071314 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.92564 -36.56331 -36.26048 -33.74486 -30.90523 -29.05509 -28.35380 -26.66161 -24.46072 -23.88638 -20.98102 -20.90194 -20.17774 -17.70799 -16.96717 -16.85298 -16.00471 -15.76475 -15.26730 -15.10665 -14.50604 -14.19355 -13.98437 -13.53560 -13.25147 -13.09742 -12.88495 -12.82894 -12.35498 -12.14775 -11.96197 -11.83151 -11.79921 -11.40083 -11.29974 -11.16888 -10.96817 -10.60606 -10.34541 -10.30492 -9.02712 -8.04108 -6.13380 1.37685 1.40290 1.50734 2.44764 3.05616 3.23322 3.79475 4.01238 4.13942 4.26099 4.35275 4.54542 4.59779 4.64564 4.68117 4.77668 4.82658 4.86851 4.91478 4.94903 5.02896 5.08817 5.17339 5.25659 5.31550 5.33168 5.42032 5.49212 5.52617 5.67740 5.75619 5.79434 6.11001 6.22817 6.38991 6.47207 6.56012 6.99880 7.52971 9.01516 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030527 B = 0.010610 C = 0.008503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.008748 B = 2638.507774 C = 3292.234580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.559 5.559 3 C 0.083 3.917 4 C -0.110 4.110 5 C -0.093 4.093 6 C 0.055 3.945 7 H -0.018 1.018 8 C -0.522 4.522 9 H 0.068 0.932 10 C 0.006 3.994 11 N -0.923 5.923 12 Si 0.945 3.055 13 H -0.264 1.264 14 H -0.285 1.285 15 H -0.286 1.286 16 C -0.069 4.069 17 H 0.069 0.931 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.100 4.100 21 C 0.095 3.905 22 H 0.012 0.988 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.012 0.988 26 H 0.004 0.996 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.019 0.981 31 H 0.040 0.960 32 H 0.255 0.745 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.955 -6.188 -5.828 12.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.284 5.284 3 C -0.045 4.045 4 C -0.148 4.148 5 C -0.131 4.131 6 C 0.037 3.963 7 H 0.000 1.000 8 C -0.560 4.560 9 H 0.086 0.914 10 C -0.192 4.192 11 N -0.563 5.563 12 Si 0.772 3.228 13 H -0.188 1.188 14 H -0.211 1.211 15 H -0.212 1.212 16 C -0.088 4.088 17 H 0.087 0.913 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.138 4.138 21 C -0.014 4.014 22 H 0.030 0.970 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.031 0.969 26 H 0.023 0.977 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.752 -6.198 -6.141 12.358 hybrid contribution 0.988 0.814 1.675 2.108 sum -7.764 -5.385 -4.466 10.451 Atomic orbital electron populations 1.22396 0.86271 1.02929 1.00126 1.59265 1.07882 1.11737 1.49482 1.21491 0.96461 0.88315 0.98217 1.21770 0.93989 1.01040 0.97952 1.21485 0.95635 1.00412 0.95612 1.18377 0.93902 0.91705 0.92303 0.99991 1.21990 1.09165 0.95188 1.29683 0.91361 1.25777 1.00487 0.95146 0.97763 1.70100 1.40420 1.02432 1.43396 0.85693 0.80243 0.78703 0.78185 1.18807 1.21078 1.21184 1.22102 0.93320 0.95000 0.98344 0.91291 1.22104 0.97245 0.95157 1.00919 1.22223 0.94332 0.98362 1.00559 1.22199 0.97945 0.92119 1.01553 1.22179 0.95396 0.93303 0.90547 0.96994 0.90353 0.90116 0.96946 0.97725 0.89770 0.91589 0.91793 0.96252 0.94174 0.93604 0.92446 0.92954 0.92070 0.90363 0.91000 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.34 127.69 1.19 1.97 16 2 N -0.56 -18.57 4.20 -899.53 -3.78 -22.35 16 3 C 0.08 2.97 5.13 86.07 0.44 3.41 16 4 C -0.11 -4.22 5.55 30.83 0.17 -4.05 16 5 C -0.09 -4.58 4.61 30.66 0.14 -4.44 16 6 C 0.06 2.82 1.57 -12.19 -0.02 2.80 16 7 H -0.02 -1.04 6.30 -2.39 -0.02 -1.06 16 8 C -0.52 -28.83 7.29 25.60 0.19 -28.65 16 9 H 0.07 3.65 5.59 -2.91 -0.02 3.64 16 10 C 0.01 0.32 5.30 84.65 0.45 0.77 16 11 N -0.92 -55.06 11.51 21.44 0.25 -54.81 16 12 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 13 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 16 C -0.07 -2.87 2.25 -9.67 -0.02 -2.89 16 17 H 0.07 2.89 6.61 -2.39 -0.02 2.88 16 18 C -0.12 -4.46 4.97 31.14 0.15 -4.31 16 19 C -0.12 -3.44 6.82 31.50 0.21 -3.23 16 20 C -0.10 -2.85 5.17 31.47 0.16 -2.69 16 21 C 0.09 3.44 2.12 47.00 0.10 3.54 16 22 H 0.01 0.52 7.46 -2.39 -0.02 0.50 16 23 H 0.08 1.71 7.94 -2.39 -0.02 1.69 16 24 H 0.08 1.79 6.89 -2.39 -0.02 1.77 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.00 0.19 6.83 -2.38 -0.02 0.17 16 27 H 0.08 2.51 7.66 -2.39 -0.02 2.49 16 28 H 0.07 2.45 7.03 -2.39 -0.02 2.44 16 29 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.02 0.97 7.94 -2.39 -0.02 0.96 16 31 H 0.04 2.21 6.67 -2.38 -0.02 2.20 16 32 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.06 2.52 6.04 -2.39 -0.01 2.50 16 34 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 1.76 8.00 -2.39 -0.02 1.74 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -61.55 274.80 2.68 -58.87 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.01 Total: 9.31 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 3.17 Total: -37.76 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -3.53 Total: -77.16 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -61.55 2.68 -58.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554902.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.771 kcal (2) G-P(sol) polarization free energy of solvation -61.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds