Wall clock time and date at job start Mon Mar 30 2020 03:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.47734 * 1 3 3 C 1.44323 * 108.10871 * 2 1 4 4 C 1.50690 * 111.11924 * 220.14024 * 3 2 1 5 5 C 1.57422 * 108.65818 * 264.48718 * 4 3 2 6 6 C 1.52774 * 104.24032 * 32.78992 * 5 4 3 7 7 H 1.09372 * 108.50922 * 287.61251 * 6 5 4 8 8 C 1.52009 * 106.35910 * 175.50476 * 6 5 4 9 9 H 1.08003 * 119.99924 * 234.91845 * 8 6 5 10 10 C 1.37875 * 120.00347 * 54.92485 * 8 6 5 11 11 N 1.31519 * 119.99792 * 11.68869 * 10 8 6 12 12 Si 1.86796 * 120.00247 * 191.68169 * 10 8 6 13 13 H 1.48502 * 109.46992 * 94.99648 * 12 10 8 14 14 H 1.48506 * 109.47082 * 214.99337 * 12 10 8 15 15 H 1.48501 * 109.47336 * 334.99293 * 12 10 8 16 16 C 1.47275 * 121.13088 * 53.80771 * 6 5 4 17 17 H 1.10937 * 107.96096 * 138.42218 * 16 6 5 18 18 C 1.52273 * 122.19636 * 13.10739 * 16 6 5 19 19 C 1.55745 * 99.81706 * 187.81806 * 18 16 6 20 20 C 1.54629 * 105.11897 * 35.28860 * 19 18 16 21 21 C 1.47240 * 110.81357 * 130.85575 * 2 1 3 22 22 H 1.09650 * 115.68172 * 300.08803 * 21 2 1 23 23 H 1.09003 * 109.47271 * 63.95058 * 1 2 3 24 24 H 1.08996 * 109.47761 * 183.95525 * 1 2 3 25 25 H 1.09003 * 109.47141 * 303.95592 * 1 2 3 26 26 H 1.08215 * 110.64825 * 95.08895 * 3 2 1 27 27 H 1.10249 * 107.18899 * 338.49562 * 3 2 1 28 28 H 1.10482 * 108.98362 * 145.76215 * 4 3 2 29 29 H 1.08870 * 111.61150 * 27.78635 * 4 3 2 30 30 H 1.09758 * 110.98876 * 273.47725 * 5 4 3 31 31 H 1.09721 * 111.05813 * 152.25165 * 5 4 3 32 32 H 0.96996 * 120.00362 * 180.02562 * 11 10 8 33 33 H 1.08843 * 111.34273 * 71.02198 * 18 16 6 34 34 H 1.08246 * 112.73944 * 304.60196 * 18 16 6 35 35 H 1.08670 * 110.04529 * 276.59217 * 19 18 16 36 36 H 1.08685 * 110.04478 * 153.95827 * 19 18 16 37 37 H 1.08358 * 110.13738 * 116.53360 * 20 19 18 38 38 H 1.09842 * 108.92530 * 235.73524 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4773 0.0000 0.0000 3 6 1.9259 1.3717 0.0000 4 6 3.1161 1.5538 -0.9062 5 6 4.4275 1.4565 -0.0408 6 6 4.0778 0.4570 1.0604 7 1 3.3891 0.9385 1.7604 8 6 5.3512 0.2399 1.8617 9 1 5.7361 -0.7591 2.0038 10 6 6.0147 1.3183 2.4073 11 7 5.4373 2.4996 2.4362 12 14 7.7337 1.1016 3.1054 13 1 8.7370 1.4592 2.0705 14 1 7.9037 1.9862 4.2861 15 1 7.9272 -0.3128 3.5146 16 6 3.5511 -0.8796 0.7364 17 1 4.0412 -1.6128 1.4093 18 6 3.5980 -1.4500 -0.6748 19 6 2.7471 -2.7381 -0.4690 20 6 1.6594 -2.3433 0.5567 21 6 2.0005 -0.9003 1.0410 22 1 1.7063 -0.6593 2.0694 23 1 -0.3634 0.4513 -0.9233 24 1 -0.3634 -1.0251 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 2.1299 1.7065 1.0086 27 1 1.0958 1.9860 -0.3861 28 1 3.0641 2.5547 -1.3711 29 1 3.1184 0.8262 -1.7160 30 1 4.6891 2.4325 0.3876 31 1 5.2711 1.0960 -0.6427 32 1 5.9042 3.2585 2.8197 33 1 4.6154 -1.7056 -0.9651 34 1 3.1248 -0.8040 -1.4031 35 1 3.3686 -3.5353 -0.0700 36 1 2.2878 -3.0351 -1.4082 37 1 0.6771 -2.4147 0.1049 38 1 1.7069 -3.0336 1.4098 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260554908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:23 Heat of formation + Delta-G solvation = 22.001694 kcal Electronic energy + Delta-G solvation = -16866.602578 eV Core-core repulsion = 14516.443488 eV Total energy + Delta-G solvation = -2350.159090 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.61626 -34.70314 -34.38166 -31.71855 -29.28742 -27.16461 -26.68923 -24.86697 -22.99346 -22.45949 -19.47398 -19.01993 -17.90164 -16.52182 -15.20801 -14.83296 -14.77755 -14.07267 -13.78132 -13.17421 -12.87905 -12.58661 -12.11565 -11.70965 -11.53404 -11.38489 -11.18820 -10.95270 -10.83171 -10.48807 -10.44819 -10.20719 -10.08615 -9.95214 -9.57773 -9.23738 -9.11660 -9.00498 -8.38329 -7.98672 -7.50132 -5.92643 -3.91898 3.33814 3.41377 3.44335 4.49193 4.55429 5.17531 5.36042 5.47927 5.54353 5.57073 5.76521 5.86285 5.98767 6.00418 6.11082 6.18623 6.27087 6.34399 6.39761 6.42528 6.55839 6.58236 6.65945 6.70569 6.80854 6.93392 7.05188 7.21392 7.28543 7.40359 7.60626 7.78560 7.89561 8.04522 8.11585 8.29160 8.52798 9.08888 9.68760 11.13835 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.034189 B = 0.010077 C = 0.008899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.771796 B = 2777.853182 C = 3145.553530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.539 5.539 3 C 0.073 3.927 4 C -0.121 4.121 5 C -0.085 4.085 6 C 0.027 3.973 7 H 0.034 0.966 8 C -0.514 4.514 9 H 0.051 0.949 10 C 0.059 3.941 11 N -0.890 5.890 12 Si 0.880 3.120 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.276 1.276 16 C -0.048 4.048 17 H 0.056 0.944 18 C -0.101 4.101 19 C -0.119 4.119 20 C -0.112 4.112 21 C 0.069 3.931 22 H 0.066 0.934 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.016 0.984 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.035 0.965 32 H 0.257 0.743 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 -4.999 -5.265 10.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.265 5.265 3 C -0.055 4.055 4 C -0.159 4.159 5 C -0.123 4.123 6 C 0.008 3.992 7 H 0.052 0.948 8 C -0.553 4.553 9 H 0.069 0.931 10 C -0.141 4.141 11 N -0.530 5.530 12 Si 0.709 3.291 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.201 1.201 16 C -0.066 4.066 17 H 0.074 0.926 18 C -0.139 4.139 19 C -0.157 4.157 20 C -0.150 4.150 21 C -0.038 4.038 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.367 -5.013 -5.566 10.506 hybrid contribution 0.679 0.306 1.310 1.507 sum -6.688 -4.707 -4.256 9.220 Atomic orbital electron populations 1.22635 0.89959 1.00864 0.99629 1.61134 1.05355 1.11930 1.48065 1.21182 0.96632 0.87261 1.00375 1.22393 0.96660 0.99043 0.97836 1.22376 0.92441 1.02261 0.95214 1.17977 0.96362 0.90487 0.94337 0.94844 1.22043 1.08922 0.92568 1.31748 0.93105 1.24944 0.97501 0.95651 0.96003 1.69931 1.36510 1.00408 1.46122 0.86766 0.86035 0.77876 0.78469 1.20848 1.21553 1.20097 1.21456 0.91053 0.98592 0.95527 0.92610 1.22001 0.97732 0.95824 0.98296 1.22410 0.97131 0.98323 0.97804 1.22608 0.98483 0.95734 0.98135 1.24080 0.98136 0.90350 0.91263 0.91608 0.92454 0.92085 0.96501 0.92600 0.94461 0.94864 0.91888 0.89334 0.94613 0.93300 0.93194 0.89551 0.93019 0.93073 0.92232 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.00 60.52 0.54 0.80 16 2 N -0.54 -9.36 2.62 -231.74 -0.61 -9.97 16 3 C 0.07 1.38 4.79 -6.36 -0.03 1.35 16 4 C -0.12 -2.36 5.50 -25.48 -0.14 -2.50 16 5 C -0.09 -1.99 5.22 -24.44 -0.13 -2.12 16 6 C 0.03 0.64 1.14 -93.99 -0.11 0.54 16 7 H 0.03 0.91 5.51 -51.72 -0.29 0.62 16 8 C -0.51 -14.10 8.22 -33.79 -0.28 -14.37 16 9 H 0.05 1.40 7.17 -52.48 -0.38 1.03 16 10 C 0.06 1.64 5.07 -17.82 -0.09 1.55 16 11 N -0.89 -25.41 11.37 55.43 0.63 -24.78 16 12 Si 0.88 21.53 29.55 -169.99 -5.02 16.50 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 C -0.05 -0.99 1.85 -90.98 -0.17 -1.16 16 17 H 0.06 1.25 6.98 -50.82 -0.35 0.90 16 18 C -0.10 -1.86 5.71 -25.64 -0.15 -2.00 16 19 C -0.12 -1.87 6.72 -24.41 -0.16 -2.03 16 20 C -0.11 -1.73 6.02 -24.28 -0.15 -1.88 16 21 C 0.07 1.27 3.55 -63.16 -0.22 1.04 16 22 H 0.07 1.27 8.20 -51.56 -0.42 0.85 16 23 H 0.06 0.76 8.01 -51.93 -0.42 0.35 16 24 H 0.06 0.81 5.92 -51.93 -0.31 0.50 16 25 H 0.02 0.24 8.10 -51.93 -0.42 -0.18 16 26 H 0.06 1.21 5.88 -52.37 -0.31 0.91 16 27 H 0.04 0.63 7.36 -51.22 -0.38 0.25 16 28 H 0.03 0.60 8.27 -51.08 -0.42 0.18 16 29 H 0.06 1.18 5.84 -52.00 -0.30 0.87 16 30 H 0.09 2.32 6.20 -51.50 -0.32 2.00 16 31 H 0.04 0.85 8.20 -51.52 -0.42 0.42 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.05 0.93 8.13 -52.02 -0.42 0.50 16 34 H 0.09 1.60 4.52 -52.35 -0.24 1.36 16 35 H 0.05 0.78 8.11 -52.11 -0.42 0.36 16 36 H 0.05 0.73 8.12 -52.11 -0.42 0.31 16 37 H 0.06 0.84 6.03 -52.29 -0.32 0.53 16 38 H 0.05 0.71 8.21 -51.45 -0.42 0.29 16 LS Contribution 270.71 15.07 4.08 4.08 Total: -1.00 -27.52 270.71 -8.11 -35.63 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.11 Total: -0.66 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -1.08 Total: -20.80 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.02 Total: -34.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.52 -8.11 -35.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.634 kcal (2) G-P(sol) polarization free energy of solvation -27.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds