Wall clock time and date at job start Mon Mar 30 2020 03:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.47734 * 1 3 3 C 1.44323 * 108.10871 * 2 1 4 4 C 1.50690 * 111.11924 * 220.14024 * 3 2 1 5 5 C 1.57422 * 108.65818 * 264.48718 * 4 3 2 6 6 C 1.52774 * 104.24032 * 32.78992 * 5 4 3 7 7 H 1.09372 * 108.50922 * 287.61251 * 6 5 4 8 8 C 1.52009 * 106.35910 * 175.50476 * 6 5 4 9 9 H 1.08003 * 119.99924 * 234.91845 * 8 6 5 10 10 C 1.37875 * 120.00347 * 54.92485 * 8 6 5 11 11 N 1.31519 * 119.99792 * 11.68869 * 10 8 6 12 12 Si 1.86796 * 120.00247 * 191.68169 * 10 8 6 13 13 H 1.48502 * 109.46992 * 94.99648 * 12 10 8 14 14 H 1.48506 * 109.47082 * 214.99337 * 12 10 8 15 15 H 1.48501 * 109.47336 * 334.99293 * 12 10 8 16 16 C 1.47275 * 121.13088 * 53.80771 * 6 5 4 17 17 H 1.10937 * 107.96096 * 138.42218 * 16 6 5 18 18 C 1.52273 * 122.19636 * 13.10739 * 16 6 5 19 19 C 1.55745 * 99.81706 * 187.81806 * 18 16 6 20 20 C 1.54629 * 105.11897 * 35.28860 * 19 18 16 21 21 C 1.47240 * 110.81357 * 130.85575 * 2 1 3 22 22 H 1.09650 * 115.68172 * 300.08803 * 21 2 1 23 23 H 1.09003 * 109.47271 * 63.95058 * 1 2 3 24 24 H 1.08996 * 109.47761 * 183.95525 * 1 2 3 25 25 H 1.09003 * 109.47141 * 303.95592 * 1 2 3 26 26 H 1.08215 * 110.64825 * 95.08895 * 3 2 1 27 27 H 1.10249 * 107.18899 * 338.49562 * 3 2 1 28 28 H 1.10482 * 108.98362 * 145.76215 * 4 3 2 29 29 H 1.08870 * 111.61150 * 27.78635 * 4 3 2 30 30 H 1.09758 * 110.98876 * 273.47725 * 5 4 3 31 31 H 1.09721 * 111.05813 * 152.25165 * 5 4 3 32 32 H 0.96996 * 120.00362 * 180.02562 * 11 10 8 33 33 H 1.08843 * 111.34273 * 71.02198 * 18 16 6 34 34 H 1.08246 * 112.73944 * 304.60196 * 18 16 6 35 35 H 1.08670 * 110.04529 * 276.59217 * 19 18 16 36 36 H 1.08685 * 110.04478 * 153.95827 * 19 18 16 37 37 H 1.08358 * 110.13738 * 116.53360 * 20 19 18 38 38 H 1.09842 * 108.92530 * 235.73524 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4773 0.0000 0.0000 3 6 1.9259 1.3717 0.0000 4 6 3.1161 1.5538 -0.9062 5 6 4.4275 1.4565 -0.0408 6 6 4.0778 0.4570 1.0604 7 1 3.3891 0.9385 1.7604 8 6 5.3512 0.2399 1.8617 9 1 5.7361 -0.7591 2.0038 10 6 6.0147 1.3183 2.4073 11 7 5.4373 2.4996 2.4362 12 14 7.7337 1.1016 3.1054 13 1 8.7370 1.4592 2.0705 14 1 7.9037 1.9862 4.2861 15 1 7.9272 -0.3128 3.5146 16 6 3.5511 -0.8796 0.7364 17 1 4.0412 -1.6128 1.4093 18 6 3.5980 -1.4500 -0.6748 19 6 2.7471 -2.7381 -0.4690 20 6 1.6594 -2.3433 0.5567 21 6 2.0005 -0.9003 1.0410 22 1 1.7063 -0.6593 2.0694 23 1 -0.3634 0.4513 -0.9233 24 1 -0.3634 -1.0251 0.0709 25 1 -0.3633 0.5740 0.8524 26 1 2.1299 1.7065 1.0086 27 1 1.0958 1.9860 -0.3861 28 1 3.0641 2.5547 -1.3711 29 1 3.1184 0.8262 -1.7160 30 1 4.6891 2.4325 0.3876 31 1 5.2711 1.0960 -0.6427 32 1 5.9042 3.2585 2.8197 33 1 4.6154 -1.7056 -0.9651 34 1 3.1248 -0.8040 -1.4031 35 1 3.3686 -3.5353 -0.0700 36 1 2.2878 -3.0351 -1.4082 37 1 0.6771 -2.4147 0.1049 38 1 1.7069 -3.0336 1.4098 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260554908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:22 Heat of formation + Delta-G solvation = 7.413015 kcal Electronic energy + Delta-G solvation = -16867.235191 eV Core-core repulsion = 14516.443488 eV Total energy + Delta-G solvation = -2350.791703 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.14706 -36.30132 -36.01251 -33.64151 -30.96129 -28.61940 -28.17185 -26.66739 -24.48567 -24.23776 -20.85753 -20.58358 -19.61424 -18.48527 -16.78426 -16.70448 -16.26962 -15.69198 -15.27592 -14.65125 -14.47850 -14.32732 -13.57813 -13.34501 -13.17777 -12.99594 -12.86006 -12.72123 -12.42683 -12.21498 -11.89495 -11.84521 -11.74790 -11.43847 -11.13503 -10.98137 -10.93478 -10.73672 -10.30778 -9.99027 -8.94965 -8.07023 -6.13380 1.35908 1.38303 1.47031 2.43084 3.15778 3.18897 3.76206 4.07105 4.08896 4.23555 4.46046 4.55520 4.60968 4.66275 4.69036 4.72666 4.82209 4.92152 4.95128 5.02249 5.09806 5.13300 5.21685 5.28030 5.31566 5.38241 5.43869 5.49441 5.61178 5.67081 5.75080 5.92186 6.13132 6.34340 6.38158 6.45194 6.59474 6.97355 7.50270 8.97484 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.034189 B = 0.010077 C = 0.008899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.771796 B = 2777.853182 C = 3145.553530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.538 5.538 3 C 0.075 3.925 4 C -0.109 4.109 5 C -0.083 4.083 6 C 0.042 3.958 7 H -0.003 1.003 8 C -0.537 4.537 9 H 0.041 0.959 10 C 0.013 3.987 11 N -0.914 5.914 12 Si 0.938 3.062 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.272 1.272 16 C -0.054 4.054 17 H 0.031 0.969 18 C -0.098 4.098 19 C -0.111 4.111 20 C -0.103 4.103 21 C 0.069 3.931 22 H 0.047 0.953 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.013 0.987 26 H 0.018 0.982 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.257 0.743 33 H 0.040 0.960 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 -6.266 -6.640 12.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.263 5.263 3 C -0.053 4.053 4 C -0.147 4.147 5 C -0.121 4.121 6 C 0.023 3.977 7 H 0.015 0.985 8 C -0.575 4.575 9 H 0.059 0.941 10 C -0.185 4.185 11 N -0.554 5.554 12 Si 0.765 3.235 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.197 1.197 16 C -0.073 4.073 17 H 0.049 0.951 18 C -0.135 4.135 19 C -0.149 4.149 20 C -0.140 4.140 21 C -0.039 4.039 22 H 0.065 0.935 23 H 0.094 0.906 24 H 0.098 0.902 25 H 0.032 0.968 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.604 -6.291 -6.944 12.721 hybrid contribution 1.063 0.737 1.781 2.201 sum -7.541 -5.554 -5.163 10.694 Atomic orbital electron populations 1.22733 0.87552 1.02316 1.00477 1.61155 1.07476 1.10611 1.47027 1.21074 0.97271 0.88802 0.98166 1.22269 0.94434 1.00491 0.97525 1.22169 0.94342 1.00105 0.95514 1.17935 0.94084 0.92055 0.93588 0.98474 1.22461 1.10516 0.92174 1.32384 0.94097 1.25631 1.00779 0.95474 0.96583 1.70061 1.37657 1.00937 1.46774 0.85843 0.81878 0.77868 0.77912 1.20247 1.21175 1.19696 1.21366 0.93014 0.95827 0.97100 0.95072 1.21933 0.98044 0.97276 0.96235 1.22372 0.96708 0.96744 0.99027 1.22546 0.99621 0.93300 0.98570 1.23970 0.96051 0.92859 0.90987 0.93504 0.90560 0.90218 0.96804 0.96420 0.91840 0.93423 0.90294 0.92652 0.95719 0.93360 0.94076 0.89215 0.92591 0.90621 0.89816 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.00 127.53 1.15 1.58 16 2 N -0.54 -17.60 2.62 -887.09 -2.33 -19.93 16 3 C 0.08 2.77 4.79 86.04 0.41 3.18 16 4 C -0.11 -4.17 5.50 31.41 0.17 -4.00 16 5 C -0.08 -4.02 5.22 32.08 0.17 -3.85 16 6 C 0.04 2.10 1.14 -12.98 -0.01 2.08 16 7 H 0.00 -0.15 5.51 -2.19 -0.01 -0.17 16 8 C -0.54 -30.58 8.22 26.02 0.21 -30.37 16 9 H 0.04 2.35 7.17 -2.91 -0.02 2.32 16 10 C 0.01 0.76 5.07 84.65 0.43 1.18 16 11 N -0.91 -54.09 11.37 21.45 0.24 -53.85 16 12 Si 0.94 45.12 29.55 68.60 2.03 47.15 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 15 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 16 C -0.05 -2.29 1.85 -11.02 -0.02 -2.31 16 17 H 0.03 1.43 6.98 -1.34 -0.01 1.42 16 18 C -0.10 -3.44 5.71 31.30 0.18 -3.26 16 19 C -0.11 -3.13 6.72 32.10 0.22 -2.91 16 20 C -0.10 -2.87 6.02 32.18 0.19 -2.68 16 21 C 0.07 2.48 3.55 47.68 0.17 2.65 16 22 H 0.05 1.85 8.20 -2.04 -0.02 1.83 16 23 H 0.08 1.70 8.01 -2.39 -0.02 1.68 16 24 H 0.08 1.75 5.92 -2.39 -0.01 1.74 16 25 H 0.01 0.36 8.10 -2.39 -0.02 0.34 16 26 H 0.02 0.79 5.88 -2.80 -0.02 0.77 16 27 H 0.06 2.01 7.36 -1.72 -0.01 2.00 16 28 H 0.05 1.67 8.27 -1.59 -0.01 1.66 16 29 H 0.08 2.78 5.84 -2.46 -0.01 2.76 16 30 H 0.05 3.03 6.20 -1.98 -0.01 3.02 16 31 H 0.02 1.19 8.20 -2.00 -0.02 1.18 16 32 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 33 H 0.04 1.49 8.13 -2.47 -0.02 1.47 16 34 H 0.09 3.10 4.52 -2.78 -0.01 3.09 16 35 H 0.06 1.54 8.11 -2.56 -0.02 1.52 16 36 H 0.08 1.81 8.12 -2.55 -0.02 1.79 16 37 H 0.08 1.97 6.03 -2.72 -0.02 1.95 16 38 H 0.06 1.52 8.21 -1.94 -0.02 1.50 16 Total: -1.00 -61.14 270.71 4.26 -56.89 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.05 Total: 8.46 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 3.27 Total: -38.72 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -2.08 Total: -73.78 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -61.14 4.26 -56.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.301 kcal (2) G-P(sol) polarization free energy of solvation -61.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds