Wall clock time and date at job start Mon Mar 30 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35027 * 1 3 3 C 1.40074 * 120.00147 * 2 1 4 4 H 1.08005 * 120.00017 * 144.21424 * 3 2 1 5 5 C 1.40309 * 119.99772 * 324.21857 * 3 2 1 6 6 N 1.30689 * 119.99997 * 349.12425 * 5 3 2 7 7 Si 1.86803 * 119.99909 * 169.12356 * 5 3 2 8 8 H 1.48497 * 109.47217 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46796 * 119.99877 * 7 5 3 10 10 H 1.48495 * 109.47204 * 240.00051 * 7 5 3 11 11 C 1.50701 * 120.00284 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47066 * 95.00078 * 11 2 1 13 13 H 1.09004 * 109.53613 * 305.10320 * 12 11 2 14 14 C 1.53117 * 109.50122 * 65.19977 * 12 11 2 15 15 C 1.53118 * 109.16298 * 177.59585 * 14 12 11 16 16 C 1.53040 * 109.27876 * 302.34900 * 15 14 12 17 17 N 1.46844 * 109.52419 * 59.17613 * 16 15 14 18 18 C 1.46898 * 111.00146 * 174.16583 * 17 16 15 19 19 C 1.52998 * 109.46758 * 294.21045 * 18 17 16 20 20 C 1.46849 * 111.19705 * 298.26180 * 17 16 15 21 21 H 1.07995 * 120.00282 * 354.39747 * 1 2 3 22 22 H 1.08001 * 119.99996 * 174.39735 * 1 2 3 23 23 H 0.97001 * 120.00093 * 180.02562 * 6 5 3 24 24 H 1.09004 * 109.46986 * 335.00741 * 11 2 1 25 25 H 1.08997 * 109.47432 * 215.00027 * 11 2 1 26 26 H 1.09008 * 109.52310 * 297.50286 * 14 12 11 27 27 H 1.08996 * 109.52254 * 57.68815 * 14 12 11 28 28 H 1.09001 * 109.50110 * 62.28902 * 15 14 12 29 29 H 1.08997 * 109.50827 * 182.36361 * 15 14 12 30 30 H 1.08998 * 109.45555 * 299.16314 * 16 15 14 31 31 H 1.08994 * 109.45974 * 179.19683 * 16 15 14 32 32 H 1.09006 * 109.47003 * 54.20218 * 18 17 16 33 33 H 1.08992 * 109.47444 * 174.20940 * 18 17 16 34 34 H 1.09008 * 109.47061 * 299.99742 * 19 18 17 35 35 H 1.09000 * 109.47487 * 59.99596 * 19 18 17 36 36 H 1.09001 * 109.47596 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.46554 * 181.76166 * 20 17 16 38 38 H 1.09003 * 109.46449 * 301.73522 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 2.9778 1.3013 0.5470 5 6 1.5477 2.3135 -0.7105 6 7 0.5499 2.1553 -1.5395 7 14 2.3044 4.0046 -0.4714 8 1 3.4122 3.9164 0.5136 9 1 2.8338 4.4978 -1.7682 10 1 1.2691 4.9437 0.0300 11 6 2.1038 -1.3051 0.0006 12 6 2.4677 -1.6845 -1.4363 13 1 1.5658 -1.7028 -2.0481 14 6 3.4495 -0.6555 -2.0037 15 6 3.8548 -1.0749 -3.4194 16 6 4.4689 -2.4760 -3.3751 17 7 3.4906 -3.4234 -2.8257 18 6 3.9951 -4.8012 -2.8963 19 6 4.1322 -5.2196 -4.3615 20 6 3.1221 -3.0678 -1.4494 21 1 -0.5400 0.9308 0.0913 22 1 -0.5400 -0.9308 -0.0913 23 1 0.2024 2.9160 -2.0310 24 1 1.4789 -2.0853 0.4351 25 1 3.0145 -1.1986 0.5900 26 1 2.9721 0.3239 -2.0365 27 1 4.3351 -0.6090 -1.3699 28 1 2.9746 -1.0835 -4.0624 29 1 4.5859 -0.3688 -3.8129 30 1 5.3568 -2.4633 -2.7430 31 1 4.7455 -2.7833 -4.3835 32 1 4.9691 -4.8569 -2.4100 33 1 3.2981 -5.4697 -2.3912 34 1 3.1583 -5.1639 -4.8480 35 1 4.8293 -4.5511 -4.8667 36 1 4.5070 -6.2418 -4.4141 37 1 2.4205 -3.8051 -1.0593 38 1 4.0163 -3.0523 -0.8264 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260574417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:11 Heat of formation + Delta-G solvation = -5.474952 kcal Electronic energy + Delta-G solvation = -15937.800810 eV Core-core repulsion = 13586.450243 eV Total energy + Delta-G solvation = -2351.350567 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.85005 -35.58499 -33.54099 -31.85180 -30.20376 -29.18305 -25.54915 -24.59678 -23.83538 -21.99963 -20.59214 -19.22242 -18.41881 -15.80575 -15.53521 -14.96995 -14.74570 -14.26296 -13.77458 -13.45338 -13.12884 -12.83900 -12.60774 -12.09164 -11.77759 -11.74508 -11.51827 -11.35664 -11.04746 -10.91350 -10.71720 -10.51064 -10.31006 -9.87930 -9.79693 -9.60350 -9.33545 -9.06390 -8.75223 -8.01388 -7.01284 -6.30215 -4.00174 3.13970 3.26479 3.30730 4.08155 4.22494 4.33398 5.04810 5.25954 5.30774 5.38981 5.49271 5.54107 5.63919 5.77581 5.82075 5.87789 6.03089 6.05969 6.09574 6.19002 6.32078 6.37716 6.45766 6.63223 6.74717 6.94680 6.97448 7.11084 7.32745 7.41927 7.45621 7.49843 7.53147 7.68598 8.31806 8.52174 9.11636 9.36592 9.53659 10.71634 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039802 B = 0.007243 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.308945 B = 3864.998786 C = 4224.076219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C 0.037 3.963 3 C -0.474 4.474 4 H 0.058 0.942 5 C 0.077 3.923 6 N -0.814 5.814 7 Si 0.888 3.112 8 H -0.266 1.266 9 H -0.280 1.280 10 H -0.279 1.279 11 C -0.074 4.074 12 C -0.063 4.063 13 H 0.073 0.927 14 C -0.112 4.112 15 C -0.118 4.118 16 C 0.057 3.943 17 N -0.538 5.538 18 C 0.050 3.950 19 C -0.148 4.148 20 C 0.061 3.939 21 H 0.078 0.922 22 H 0.040 0.960 23 H 0.268 0.732 24 H 0.040 0.960 25 H 0.045 0.955 26 H 0.099 0.901 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.377 -8.995 -4.040 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.364 4.364 2 C 0.036 3.964 3 C -0.507 4.507 4 H 0.076 0.924 5 C -0.136 4.136 6 N -0.443 5.443 7 Si 0.715 3.285 8 H -0.190 1.190 9 H -0.206 1.206 10 H -0.204 1.204 11 C -0.112 4.112 12 C -0.082 4.082 13 H 0.091 0.909 14 C -0.149 4.149 15 C -0.156 4.156 16 C -0.071 4.071 17 N -0.263 5.263 18 C -0.078 4.078 19 C -0.205 4.205 20 C -0.066 4.066 21 H 0.097 0.903 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.839 -8.862 -4.491 12.061 hybrid contribution 1.048 0.822 0.453 1.407 sum 7.887 -8.040 -4.038 11.964 Atomic orbital electron populations 1.23286 0.94777 0.96937 1.21423 1.18305 0.92895 0.91007 0.94199 1.18981 1.07278 0.95368 1.29026 0.92360 1.25648 0.94512 0.99490 0.93909 1.69794 1.22784 1.31098 1.20634 0.86602 0.79736 0.83631 0.78575 1.19043 1.20584 1.20425 1.20679 0.98737 0.97390 0.94379 1.20966 0.98452 0.91431 0.97306 0.90886 1.21666 0.98279 1.01614 0.93361 1.21634 1.00479 0.94113 0.99342 1.22128 0.92726 0.93370 0.98849 1.61939 1.41510 1.01359 1.21515 1.22036 0.98040 0.90571 0.97149 1.21803 1.02336 1.00134 0.96274 1.22252 0.98499 0.98570 0.87315 0.90312 0.94119 0.92159 0.94138 0.93654 0.88293 0.93681 0.91511 0.92424 0.95640 0.91442 0.95550 0.91119 0.91863 0.92774 0.92762 0.91562 0.95604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.32 -8.92 12.84 29.59 0.38 -8.54 16 2 C 0.04 0.98 4.54 -105.07 -0.48 0.50 16 3 C -0.47 -12.82 6.98 -38.12 -0.27 -13.09 16 4 H 0.06 1.56 7.87 -52.48 -0.41 1.14 16 5 C 0.08 2.07 5.03 -17.26 -0.09 1.98 16 6 N -0.81 -22.68 11.43 55.57 0.64 -22.05 16 7 Si 0.89 20.16 29.58 -169.99 -5.03 15.13 16 8 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 C -0.07 -1.63 4.86 -27.88 -0.14 -1.76 16 12 C -0.06 -1.27 2.34 -90.54 -0.21 -1.48 16 13 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 14 C -0.11 -2.26 4.74 -26.61 -0.13 -2.38 16 15 C -0.12 -2.02 6.09 -26.65 -0.16 -2.18 16 16 C 0.06 0.86 5.29 -3.83 -0.02 0.84 16 17 N -0.54 -8.44 4.66 -234.68 -1.09 -9.53 16 18 C 0.05 0.64 5.68 -3.83 -0.02 0.62 16 19 C -0.15 -1.61 9.84 37.16 0.37 -1.24 16 20 C 0.06 1.04 4.74 -3.84 -0.02 1.02 16 21 H 0.08 2.33 6.87 -52.49 -0.36 1.97 16 22 H 0.04 1.06 8.06 -52.49 -0.42 0.64 16 23 H 0.27 6.95 8.29 -40.82 -0.34 6.61 16 24 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 25 H 0.04 0.97 8.12 -51.93 -0.42 0.54 16 26 H 0.10 2.37 6.09 -51.92 -0.32 2.05 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.91 6.21 -51.93 -0.32 0.58 16 32 H 0.03 0.33 8.12 -51.93 -0.42 -0.10 16 33 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 34 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.05 0.58 6.43 -51.93 -0.33 0.25 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 1.07 8.02 -51.93 -0.42 0.66 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 295.22 15.07 4.45 4.45 Total: -1.00 -27.93 295.22 -8.60 -36.53 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.78 Total: 1.19 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: -0.78 Total: -25.72 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: -0.46 Total: -31.58 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.93 -8.60 -36.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260574417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.054 kcal (2) G-P(sol) polarization free energy of solvation -27.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds