Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35027 * 1 3 3 C 1.40074 * 120.00147 * 2 1 4 4 H 1.08005 * 120.00017 * 144.21424 * 3 2 1 5 5 C 1.40309 * 119.99772 * 324.21857 * 3 2 1 6 6 N 1.30689 * 119.99997 * 349.12425 * 5 3 2 7 7 Si 1.86803 * 119.99909 * 169.12356 * 5 3 2 8 8 H 1.48497 * 109.47217 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46796 * 119.99877 * 7 5 3 10 10 H 1.48495 * 109.47204 * 240.00051 * 7 5 3 11 11 C 1.50701 * 120.00284 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47066 * 95.00078 * 11 2 1 13 13 H 1.09004 * 109.53613 * 305.10320 * 12 11 2 14 14 C 1.53117 * 109.50122 * 65.19977 * 12 11 2 15 15 C 1.53118 * 109.16298 * 177.59585 * 14 12 11 16 16 C 1.53040 * 109.27876 * 302.34900 * 15 14 12 17 17 N 1.46844 * 109.52419 * 59.17613 * 16 15 14 18 18 C 1.46898 * 111.00146 * 174.16583 * 17 16 15 19 19 C 1.52998 * 109.46758 * 294.21045 * 18 17 16 20 20 C 1.46849 * 111.19705 * 298.26180 * 17 16 15 21 21 H 1.07995 * 120.00282 * 354.39747 * 1 2 3 22 22 H 1.08001 * 119.99996 * 174.39735 * 1 2 3 23 23 H 0.97001 * 120.00093 * 180.02562 * 6 5 3 24 24 H 1.09004 * 109.46986 * 335.00741 * 11 2 1 25 25 H 1.08997 * 109.47432 * 215.00027 * 11 2 1 26 26 H 1.09008 * 109.52310 * 297.50286 * 14 12 11 27 27 H 1.08996 * 109.52254 * 57.68815 * 14 12 11 28 28 H 1.09001 * 109.50110 * 62.28902 * 15 14 12 29 29 H 1.08997 * 109.50827 * 182.36361 * 15 14 12 30 30 H 1.08998 * 109.45555 * 299.16314 * 16 15 14 31 31 H 1.08994 * 109.45974 * 179.19683 * 16 15 14 32 32 H 1.09006 * 109.47003 * 54.20218 * 18 17 16 33 33 H 1.08992 * 109.47444 * 174.20940 * 18 17 16 34 34 H 1.09008 * 109.47061 * 299.99742 * 19 18 17 35 35 H 1.09000 * 109.47487 * 59.99596 * 19 18 17 36 36 H 1.09001 * 109.47596 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.46554 * 181.76166 * 20 17 16 38 38 H 1.09003 * 109.46449 * 301.73522 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 2.9778 1.3013 0.5470 5 6 1.5477 2.3135 -0.7105 6 7 0.5499 2.1553 -1.5395 7 14 2.3044 4.0046 -0.4714 8 1 3.4122 3.9164 0.5136 9 1 2.8338 4.4978 -1.7682 10 1 1.2691 4.9437 0.0300 11 6 2.1038 -1.3051 0.0006 12 6 2.4677 -1.6845 -1.4363 13 1 1.5658 -1.7028 -2.0481 14 6 3.4495 -0.6555 -2.0037 15 6 3.8548 -1.0749 -3.4194 16 6 4.4689 -2.4760 -3.3751 17 7 3.4906 -3.4234 -2.8257 18 6 3.9951 -4.8012 -2.8963 19 6 4.1322 -5.2196 -4.3615 20 6 3.1221 -3.0678 -1.4494 21 1 -0.5400 0.9308 0.0913 22 1 -0.5400 -0.9308 -0.0913 23 1 0.2024 2.9160 -2.0310 24 1 1.4789 -2.0853 0.4351 25 1 3.0145 -1.1986 0.5900 26 1 2.9721 0.3239 -2.0365 27 1 4.3351 -0.6090 -1.3699 28 1 2.9746 -1.0835 -4.0624 29 1 4.5859 -0.3688 -3.8129 30 1 5.3568 -2.4633 -2.7430 31 1 4.7455 -2.7833 -4.3835 32 1 4.9691 -4.8569 -2.4100 33 1 3.2981 -5.4697 -2.3912 34 1 3.1583 -5.1639 -4.8480 35 1 4.8293 -4.5511 -4.8667 36 1 4.5070 -6.2418 -4.4141 37 1 2.4205 -3.8051 -1.0593 38 1 4.0163 -3.0523 -0.8264 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260574417.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -21.131863 kcal Electronic energy + Delta-G solvation = -15938.479744 eV Core-core repulsion = 13586.450243 eV Total energy + Delta-G solvation = -2352.029501 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22434 -37.33045 -35.18018 -33.53510 -31.72586 -30.54246 -27.42799 -26.51061 -25.11685 -23.36129 -21.95810 -20.84775 -20.25055 -17.68717 -16.98502 -16.74446 -16.04945 -15.67495 -15.19539 -15.01097 -14.68490 -14.21758 -14.09396 -13.89616 -13.47123 -13.06926 -12.86584 -12.77752 -12.62485 -12.35771 -12.27488 -12.00466 -11.91063 -11.65577 -11.41142 -11.32780 -11.03027 -10.96657 -10.71622 -9.19991 -9.12919 -8.37995 -6.17032 1.31486 1.39757 1.52031 2.11888 2.33406 2.98706 3.36531 3.93802 4.00626 4.08713 4.22249 4.35956 4.45387 4.55774 4.60005 4.65635 4.71731 4.78115 4.82572 4.90315 4.99238 5.00730 5.11284 5.16342 5.24798 5.32495 5.35355 5.38624 5.39284 5.52455 5.67270 5.77192 6.11841 6.20670 6.29089 6.34585 6.98885 7.22881 7.44307 8.65310 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039802 B = 0.007243 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.308945 B = 3864.998786 C = 4224.076219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.354 4.354 2 C 0.038 3.962 3 C -0.493 4.493 4 H 0.060 0.940 5 C 0.035 3.965 6 N -0.845 5.845 7 Si 0.960 3.040 8 H -0.259 1.259 9 H -0.270 1.270 10 H -0.275 1.275 11 C -0.071 4.071 12 C -0.055 4.055 13 H 0.040 0.960 14 C -0.107 4.107 15 C -0.114 4.114 16 C 0.062 3.938 17 N -0.554 5.554 18 C 0.049 3.951 19 C -0.143 4.143 20 C 0.072 3.928 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.273 0.727 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 -9.739 -4.477 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.395 4.395 2 C 0.036 3.964 3 C -0.526 4.526 4 H 0.078 0.922 5 C -0.176 4.176 6 N -0.474 5.474 7 Si 0.783 3.217 8 H -0.182 1.182 9 H -0.196 1.196 10 H -0.201 1.201 11 C -0.109 4.109 12 C -0.074 4.074 13 H 0.058 0.942 14 C -0.145 4.145 15 C -0.152 4.152 16 C -0.065 4.065 17 N -0.279 5.279 18 C -0.079 4.079 19 C -0.201 4.201 20 C -0.056 4.056 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.992 -9.626 -4.929 14.064 hybrid contribution 0.368 1.063 0.566 1.259 sum 9.360 -8.563 -4.362 13.415 Atomic orbital electron populations 1.23088 0.95421 0.95828 1.25151 1.18735 0.92837 0.93040 0.91769 1.19228 1.07463 0.96341 1.29529 0.92212 1.26490 0.94728 1.03306 0.93106 1.69898 1.23928 1.32534 1.21028 0.85502 0.78984 0.78326 0.78916 1.18217 1.19555 1.20050 1.20638 0.98670 0.95484 0.96067 1.20801 0.97493 0.93975 0.95176 0.94151 1.21527 0.97911 0.99405 0.95639 1.21580 1.00415 0.96315 0.96842 1.22092 0.92435 0.91702 1.00297 1.61912 1.42513 1.03066 1.20438 1.22139 0.98482 0.88623 0.98632 1.21775 1.02019 1.01503 0.94778 1.22033 0.98698 0.96198 0.88663 0.93178 0.93570 0.91670 0.93178 0.92671 0.92618 0.93171 0.93138 0.90858 0.94859 0.89233 0.94601 0.90605 0.92775 0.92526 0.90570 0.90751 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.35 -20.36 12.84 67.08 0.86 -19.50 16 2 C 0.04 2.03 4.54 -20.16 -0.09 1.94 16 3 C -0.49 -27.13 6.98 23.22 0.16 -26.97 16 4 H 0.06 3.20 7.87 -2.91 -0.02 3.18 16 5 C 0.03 1.88 5.03 85.37 0.43 2.31 16 6 N -0.85 -48.30 11.43 21.89 0.25 -48.05 16 7 Si 0.96 41.43 29.58 68.60 2.03 43.46 16 8 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 9 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 C -0.07 -3.12 4.86 29.85 0.14 -2.98 16 12 C -0.06 -2.25 2.34 -10.74 -0.03 -2.27 16 13 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 14 C -0.11 -4.32 4.74 30.67 0.15 -4.18 16 15 C -0.11 -3.78 6.09 30.65 0.19 -3.60 16 16 C 0.06 1.72 5.29 86.33 0.46 2.18 16 17 N -0.55 -16.13 4.66 -896.40 -4.17 -20.30 16 18 C 0.05 1.08 5.68 86.30 0.49 1.57 16 19 C -0.14 -2.65 9.84 71.98 0.71 -1.95 16 20 C 0.07 2.31 4.74 86.32 0.41 2.72 16 21 H 0.05 3.11 6.87 -2.91 -0.02 3.09 16 22 H 0.05 2.51 8.06 -2.91 -0.02 2.49 16 23 H 0.27 14.46 8.29 -92.71 -0.77 13.69 16 24 H 0.05 2.09 8.04 -2.38 -0.02 2.07 16 25 H 0.05 2.31 8.12 -2.39 -0.02 2.29 16 26 H 0.06 2.73 6.09 -2.38 -0.01 2.71 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 2.11 6.21 -2.39 -0.01 2.09 16 32 H 0.04 0.75 8.12 -2.38 -0.02 0.73 16 33 H 0.08 1.62 7.99 -2.39 -0.02 1.60 16 34 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16 35 H 0.06 1.02 6.43 -2.39 -0.02 1.00 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 2.26 8.02 -2.39 -0.02 2.25 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -61.14 295.22 2.97 -58.17 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.99 Total: 17.44 kcal Atomic # 6 Polarization: -54.60 SS G_CDS: 3.88 Total: -50.72 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -3.92 Total: -68.35 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -61.14 2.97 -58.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260574417.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.040 kcal (2) G-P(sol) polarization free energy of solvation -61.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds