Wall clock time and date at job start Mon Mar 30 2020 03:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47483 * 110.99962 * 2 1 4 4 C 1.53519 * 87.99593 * 138.67193 * 3 2 1 5 5 C 1.47487 * 111.00164 * 95.97022 * 2 1 3 6 6 H 1.09000 * 113.47140 * 336.12432 * 5 2 1 7 7 C 1.52999 * 113.47269 * 106.52950 * 5 2 1 8 8 H 1.09005 * 109.46477 * 174.30458 * 7 5 2 9 9 C 1.50699 * 109.47310 * 54.30425 * 7 5 2 10 10 H 1.08000 * 119.99924 * 296.44868 * 9 7 5 11 11 C 1.37878 * 120.00060 * 116.44457 * 9 7 5 12 12 N 1.31518 * 119.99858 * 4.74623 * 11 9 7 13 13 Si 1.86801 * 119.99925 * 184.75021 * 11 9 7 14 14 H 1.48498 * 109.46979 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47063 * 119.99809 * 13 11 9 16 16 H 1.48497 * 109.46778 * 239.99731 * 13 11 9 17 17 C 1.52996 * 109.47214 * 294.29806 * 7 5 2 18 18 C 1.54257 * 110.03537 * 297.16906 * 17 7 5 19 19 C 1.54893 * 104.19970 * 217.10281 * 18 17 7 20 20 C 1.54894 * 102.74371 * 37.94433 * 19 18 17 21 21 C 1.53875 * 110.03204 * 180.02562 * 17 7 5 22 22 H 1.08994 * 109.47300 * 38.47404 * 1 2 3 23 23 H 1.08999 * 109.46591 * 158.47553 * 1 2 3 24 24 H 1.09001 * 109.47275 * 278.47052 * 1 2 3 25 25 H 1.08996 * 113.47809 * 253.47149 * 3 2 1 26 26 H 1.09002 * 113.47384 * 23.87737 * 3 2 1 27 27 H 1.09000 * 114.16656 * 87.65745 * 4 3 2 28 28 H 1.08994 * 114.16940 * 220.35493 * 4 3 2 29 29 H 0.97002 * 119.99329 * 180.02562 * 12 11 9 30 30 H 1.09001 * 110.01535 * 58.61695 * 17 7 5 31 31 H 1.08996 * 110.49090 * 335.78491 * 18 17 7 32 32 H 1.09004 * 110.48630 * 98.42926 * 18 17 7 33 33 H 1.08998 * 110.75880 * 279.63382 * 19 18 17 34 34 H 1.09000 * 110.75903 * 156.25421 * 19 18 17 35 35 H 1.09000 * 110.48414 * 203.38131 * 20 19 18 36 36 H 1.08999 * 110.60076 * 80.79292 * 20 19 18 37 37 H 1.09000 * 110.03331 * 238.57725 * 21 17 7 38 38 H 1.09005 * 110.03395 * 0.02562 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3769 0.0000 4 6 3.0539 0.9139 1.0132 5 6 1.9976 -0.1432 1.3694 6 1 1.2997 0.1830 2.1405 7 6 2.5887 -1.5256 1.6530 8 1 3.0484 -1.5283 2.6414 9 6 3.6307 -1.8493 0.6135 10 1 3.3463 -1.9482 -0.4236 11 6 4.9472 -2.0190 0.9866 12 7 5.2790 -1.9911 2.2589 13 14 6.2595 -2.2884 -0.3153 14 1 5.6314 -2.2780 -1.6608 15 1 7.2698 -1.2033 -0.2316 16 1 6.9204 -3.5987 -0.0881 17 6 1.4769 -2.5754 1.6048 18 6 0.4387 -2.2969 2.7113 19 6 0.0196 -3.7049 3.2022 20 6 1.3523 -4.4930 3.1576 21 6 2.0576 -3.9717 1.8892 22 1 -0.3633 0.8045 -0.6393 23 1 -0.3632 -0.9560 -0.3771 24 1 -0.3634 0.1514 1.0165 25 1 2.4187 1.6803 -0.9584 26 1 1.2996 2.1099 0.4047 27 1 3.9580 0.5066 0.5606 28 1 3.2540 1.6315 1.8087 29 1 6.2052 -2.1102 2.5212 30 1 0.9944 -2.5634 0.6275 31 1 0.8906 -1.7284 3.5241 32 1 -0.4201 -1.7640 2.3031 33 1 -0.7134 -4.1470 2.5274 34 1 -0.3685 -3.6596 4.2198 35 1 1.1602 -5.5628 3.0752 36 1 1.9528 -4.2813 4.0422 37 1 1.8566 -4.6377 1.0500 38 1 3.1316 -3.9014 2.0620 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260667240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:55 Heat of formation + Delta-G solvation = 1.605366 kcal Electronic energy + Delta-G solvation = -16574.039853 eV Core-core repulsion = 14222.996312 eV Total energy + Delta-G solvation = -2351.043541 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.04569 -38.62005 -34.91516 -32.06270 -31.16881 -29.38200 -27.52600 -26.28800 -24.82454 -23.07848 -21.43214 -20.30840 -19.78773 -18.16936 -16.73068 -16.49402 -16.38157 -15.88804 -15.42210 -14.92125 -14.39385 -13.98255 -13.89702 -13.75198 -13.20545 -12.88680 -12.71975 -12.37277 -12.15019 -12.06726 -11.91164 -11.76532 -11.66481 -11.55423 -11.37120 -11.35500 -10.70720 -10.64619 -10.50530 -10.22257 -9.36105 -7.95039 -5.92800 1.39405 1.44575 1.54202 2.53155 3.33415 3.43617 4.00051 4.00837 4.06289 4.10903 4.18511 4.33771 4.58871 4.65619 4.71686 4.77201 4.82350 4.91348 4.92964 4.96633 5.02369 5.09626 5.15089 5.17179 5.24374 5.29660 5.46272 5.51647 5.61458 5.67435 5.69705 5.82836 5.91244 6.07466 6.12176 6.48393 6.77860 7.21136 7.66984 9.13939 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.019044 B = 0.014321 C = 0.009286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.930972 B = 1954.640038 C = 3014.722053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.476 5.476 3 C 0.004 3.996 4 C -0.136 4.136 5 C 0.042 3.958 6 H 0.057 0.943 7 C 0.054 3.946 8 H 0.034 0.966 9 C -0.459 4.459 10 H 0.039 0.961 11 C 0.019 3.981 12 N -0.928 5.928 13 Si 0.925 3.075 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.289 1.289 17 C -0.068 4.068 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.110 4.110 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.253 0.747 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.896 2.244 0.144 10.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.199 5.199 3 C -0.125 4.125 4 C -0.174 4.174 5 C -0.067 4.067 6 H 0.075 0.925 7 C 0.034 3.966 8 H 0.052 0.948 9 C -0.498 4.498 10 H 0.057 0.943 11 C -0.178 4.178 12 N -0.570 5.570 13 Si 0.753 3.247 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.216 1.216 17 C -0.087 4.087 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.158 4.158 21 C -0.147 4.147 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.596 1.741 -0.307 9.758 hybrid contribution 0.923 0.330 -0.070 0.983 sum -8.673 2.071 -0.377 8.925 Atomic orbital electron populations 1.22923 0.89973 1.02091 1.00667 1.68936 1.08678 1.18102 1.24149 1.23734 0.97094 0.91889 0.99787 1.23059 0.98257 0.97534 0.98568 1.23669 0.95150 0.98593 0.89312 0.92511 1.18872 0.91824 0.89244 0.96615 0.94811 1.21043 0.91954 1.43158 0.93606 0.94251 1.25408 1.00129 0.96304 0.95939 1.70019 1.17476 1.53752 1.15758 0.86017 0.80550 0.77145 0.81000 1.19839 1.21161 1.21609 1.21639 0.95391 0.95186 0.96497 1.22450 0.97915 0.97150 0.97890 1.22447 0.96497 0.95053 1.01115 1.22328 0.96646 0.99454 0.97390 1.21997 0.99924 0.96324 0.96499 0.91172 0.92185 0.94108 0.90500 0.90507 0.90666 0.92159 0.93730 0.93798 0.93339 0.91856 0.90945 0.90777 0.91271 0.93271 0.94040 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.23 9.64 127.69 1.23 1.00 16 2 N -0.48 -18.09 5.83 -927.71 -5.41 -23.50 16 3 C 0.00 0.13 7.57 83.58 0.63 0.76 16 4 C -0.14 -5.54 7.76 30.98 0.24 -5.30 16 5 C 0.04 1.72 2.52 42.23 0.11 1.83 16 6 H 0.06 2.18 6.92 -2.39 -0.02 2.16 16 7 C 0.05 2.55 1.62 -11.54 -0.02 2.53 16 8 H 0.03 1.86 6.89 -2.38 -0.02 1.84 16 9 C -0.46 -24.43 5.14 25.60 0.13 -24.30 16 10 H 0.04 2.21 7.82 -2.91 -0.02 2.19 16 11 C 0.02 1.02 5.14 84.65 0.43 1.46 16 12 N -0.93 -53.53 12.61 21.45 0.27 -53.26 16 13 Si 0.92 44.70 29.54 68.60 2.03 46.72 16 14 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 15 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 16 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 17 C -0.07 -2.84 2.32 -10.07 -0.02 -2.86 16 18 C -0.12 -3.97 5.48 31.67 0.17 -3.80 16 19 C -0.11 -3.34 6.91 31.89 0.22 -3.12 16 20 C -0.12 -4.12 6.83 31.65 0.22 -3.91 16 21 C -0.11 -4.64 6.02 31.30 0.19 -4.45 16 22 H 0.07 1.80 7.91 -2.39 -0.02 1.78 16 23 H 0.06 1.85 7.91 -2.39 -0.02 1.83 16 24 H 0.04 1.16 6.81 -2.39 -0.02 1.14 16 25 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.08 2.15 7.91 -2.39 -0.02 2.13 16 27 H 0.07 3.60 6.54 -2.39 -0.02 3.59 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 29 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.04 1.89 7.40 -2.39 -0.02 1.87 16 31 H 0.05 1.75 7.83 -2.39 -0.02 1.73 16 32 H 0.06 1.93 7.80 -2.38 -0.02 1.91 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 2.26 6.99 -2.38 -0.02 2.24 16 Total: -1.00 -58.47 290.28 1.42 -57.05 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.00 Total: 13.13 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 3.53 Total: -40.16 kcal Atomic # 7 Polarization: -71.61 SS G_CDS: -5.14 Total: -76.75 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -58.47 1.42 -57.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260667240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.660 kcal (2) G-P(sol) polarization free energy of solvation -58.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds