Wall clock time and date at job start Mon Mar 30 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46842 * 110.98943 * 2 1 4 4 C 1.53047 * 109.51624 * 185.85144 * 3 2 1 5 5 C 1.53124 * 109.27325 * 300.81358 * 4 3 2 6 6 C 1.53121 * 109.15976 * 57.65281 * 5 4 3 7 7 C 1.46851 * 111.00075 * 124.20088 * 2 1 3 8 8 H 1.09002 * 109.46181 * 294.16498 * 7 2 1 9 9 C 1.52994 * 109.46170 * 54.14538 * 7 2 1 10 10 H 1.09002 * 109.47660 * 304.78793 * 9 7 2 11 11 C 1.50700 * 109.47261 * 64.79076 * 9 7 2 12 12 H 1.08001 * 119.99669 * 55.57562 * 11 9 7 13 13 C 1.37873 * 120.00274 * 235.57147 * 11 9 7 14 14 N 1.31522 * 119.99993 * 350.93925 * 13 11 9 15 15 Si 1.86799 * 120.00355 * 170.92963 * 13 11 9 16 16 H 1.48498 * 109.46928 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46977 * 120.00260 * 15 13 11 18 18 H 1.48498 * 109.47465 * 240.00253 * 15 13 11 19 19 C 1.53001 * 109.47244 * 184.78912 * 9 7 2 20 20 C 1.53002 * 117.49790 * 106.09141 * 19 9 7 21 21 C 1.53002 * 117.50169 * 174.75082 * 19 9 7 22 22 H 1.08995 * 109.46778 * 288.42401 * 1 2 3 23 23 H 1.08995 * 109.46893 * 48.42266 * 1 2 3 24 24 H 1.08999 * 109.46839 * 168.42594 * 1 2 3 25 25 H 1.09002 * 109.47390 * 65.83256 * 3 2 1 26 26 H 1.09004 * 109.45621 * 305.85192 * 3 2 1 27 27 H 1.08999 * 109.50359 * 180.87640 * 4 3 2 28 28 H 1.09002 * 109.53440 * 60.76891 * 4 3 2 29 29 H 1.08999 * 109.52303 * 297.74422 * 5 4 3 30 30 H 1.08999 * 109.52218 * 177.55859 * 5 4 3 31 31 H 1.09002 * 109.50026 * 182.40158 * 6 5 4 32 32 H 1.09001 * 109.50484 * 62.28678 * 6 5 4 33 33 H 0.96992 * 119.99972 * 179.97438 * 14 13 11 34 34 H 1.08998 * 115.55070 * 320.42542 * 19 9 7 35 35 H 1.09001 * 117.49980 * 215.00560 * 20 19 9 36 36 H 1.09001 * 117.50142 * 0.02562 * 20 19 9 37 37 H 1.09001 * 117.49646 * 359.97438 * 21 19 9 38 38 H 1.09005 * 117.49766 * 144.99760 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3710 0.0000 4 6 3.5180 1.3343 -0.1471 5 6 4.1188 0.5372 1.0141 6 6 3.5182 -0.8713 1.0207 7 6 1.9953 -0.7706 1.1339 8 1 1.7327 -0.2704 2.0661 9 6 1.3892 -2.1753 1.1207 10 1 0.3017 -2.1018 1.1163 11 6 1.8481 -2.9089 -0.1131 12 1 2.9034 -3.0154 -0.3167 13 6 0.9209 -3.4442 -0.9818 14 7 -0.3514 -3.4731 -0.6497 15 14 1.4715 -4.1281 -2.6306 16 1 2.9430 -3.9782 -2.7621 17 1 1.1113 -5.5663 -2.7151 18 1 0.7979 -3.3840 -3.7250 19 6 1.8436 -2.9386 2.3665 20 6 0.8160 -3.1483 3.4804 21 6 1.2447 -4.3266 2.6023 22 1 -0.3633 0.3248 0.9750 23 1 -0.3633 0.6820 -0.7687 24 1 -0.3633 -1.0068 -0.2062 25 1 1.7324 1.8610 0.9376 26 1 1.5631 1.9256 -0.8331 27 1 3.9097 2.3514 -0.1314 28 1 3.7816 0.8572 -1.0910 29 1 3.8889 1.0358 1.9557 30 1 5.1998 0.4716 0.8900 31 1 3.9101 -1.4300 1.8706 32 1 3.7812 -1.3835 0.0952 33 1 -1.0037 -3.8494 -1.2609 34 1 2.8810 -2.7813 2.6618 35 1 1.1773 -3.1291 4.5086 36 1 -0.1839 -2.7430 3.3257 37 1 0.5265 -4.6958 1.8701 38 1 1.8880 -5.0825 3.0527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260686278.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:23 Heat of formation + Delta-G solvation = 4.047647 kcal Electronic energy + Delta-G solvation = -16617.705001 eV Core-core repulsion = 14266.767365 eV Total energy + Delta-G solvation = -2350.937636 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26440 -37.80454 -34.69710 -34.08095 -32.54532 -28.71890 -27.22677 -25.59673 -23.81352 -22.94916 -22.44466 -20.77882 -20.23385 -17.98204 -16.75301 -16.41808 -15.99918 -15.73576 -15.11154 -15.01624 -14.60350 -14.28669 -13.96121 -13.62135 -13.23123 -12.87162 -12.76055 -12.62830 -12.35346 -12.21836 -12.18633 -12.09329 -11.62871 -11.39253 -11.23860 -11.03340 -10.87720 -10.42249 -10.22241 -10.10634 -8.81899 -7.91874 -5.88562 1.43015 1.48111 1.55776 2.56381 3.28194 3.29002 3.48487 4.04770 4.12614 4.22429 4.29553 4.44231 4.48610 4.50400 4.59461 4.65087 4.76039 4.82094 4.86102 4.90372 5.00945 5.01624 5.17383 5.21614 5.25353 5.33937 5.41678 5.46900 5.55339 5.58530 5.73226 5.75441 5.92378 6.08457 6.48926 6.61322 6.72920 7.19943 7.71144 9.17107 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.013389 C = 0.010280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.602402 B = 2090.750492 C = 2723.136747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.534 5.534 3 C 0.052 3.948 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.102 4.102 7 C 0.108 3.892 8 H 0.004 0.996 9 C 0.059 3.941 10 H 0.042 0.958 11 C -0.461 4.461 12 H 0.043 0.957 13 C 0.028 3.972 14 N -0.922 5.922 15 Si 0.927 3.073 16 H -0.273 1.273 17 H -0.293 1.293 18 H -0.291 1.291 19 C -0.133 4.133 20 C -0.186 4.186 21 C -0.172 4.172 22 H 0.008 0.992 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.252 0.748 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.505 7.401 4.318 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.258 5.258 3 C -0.076 4.076 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.140 4.140 7 C 0.000 4.000 8 H 0.022 0.978 9 C 0.040 3.960 10 H 0.061 0.939 11 C -0.499 4.499 12 H 0.061 0.939 13 C -0.168 4.168 14 N -0.564 5.564 15 Si 0.756 3.244 16 H -0.198 1.198 17 H -0.219 1.219 18 H -0.217 1.217 19 C -0.152 4.152 20 C -0.222 4.222 21 C -0.209 4.209 22 H 0.026 0.974 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.042 0.958 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.504 7.122 3.804 9.772 hybrid contribution -0.530 -0.317 -0.398 0.735 sum 4.974 6.805 3.405 9.091 Atomic orbital electron populations 1.22339 0.88330 1.03121 0.98048 1.61718 1.06964 1.12444 1.44680 1.22185 0.96508 0.89350 0.99576 1.21540 0.93828 1.00513 0.98833 1.21604 1.00054 0.95414 0.98337 1.21554 0.94114 0.96860 1.01483 1.21569 0.95273 0.95009 0.88164 0.97812 1.18652 0.96796 0.89721 0.90842 0.93930 1.20970 0.91705 1.31660 1.05597 0.93922 1.25272 0.95201 0.96611 0.99749 1.69989 1.01583 1.48480 1.36336 0.85995 0.78351 0.77247 0.82798 1.19784 1.21944 1.21718 1.22588 0.96594 0.98993 0.97037 1.22962 0.99376 1.03898 0.96011 1.22603 1.04023 0.91953 1.02347 0.97392 0.92230 0.90809 0.95833 0.91002 0.89661 0.92530 0.92233 0.90864 0.92165 0.92572 0.93906 0.88904 0.87832 0.91183 0.91507 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.26 8.87 127.69 1.13 2.39 16 2 N -0.53 -21.93 4.46 -897.17 -4.00 -25.92 16 3 C 0.05 1.68 5.46 86.33 0.47 2.15 16 4 C -0.11 -3.12 6.09 30.65 0.19 -2.93 16 5 C -0.12 -3.36 6.00 30.68 0.18 -3.18 16 6 C -0.10 -3.75 4.83 30.65 0.15 -3.60 16 7 C 0.11 4.47 1.59 44.93 0.07 4.54 16 8 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 9 C 0.06 2.77 1.59 -11.54 -0.02 2.75 16 10 H 0.04 2.28 4.90 -2.39 -0.01 2.27 16 11 C -0.46 -24.09 7.06 25.60 0.18 -23.91 16 12 H 0.04 2.28 6.47 -2.91 -0.02 2.26 16 13 C 0.03 1.54 5.35 84.65 0.45 2.00 16 14 N -0.92 -52.11 11.70 21.45 0.25 -51.86 16 15 Si 0.93 44.67 29.55 68.60 2.03 46.69 16 16 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 18 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 19 C -0.13 -5.59 4.87 -10.79 -0.05 -5.64 16 20 C -0.19 -6.99 10.18 30.62 0.31 -6.68 16 21 C -0.17 -7.17 10.01 30.62 0.31 -6.87 16 22 H 0.01 0.31 8.11 -2.39 -0.02 0.29 16 23 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 24 H 0.07 3.68 5.47 -2.39 -0.01 3.67 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 2.17 8.00 -2.38 -0.02 2.15 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 2.09 6.43 -2.39 -0.02 2.08 16 32 H 0.06 2.34 6.36 -2.39 -0.02 2.33 16 33 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.09 3.60 6.41 -2.39 -0.02 3.59 16 35 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.07 2.81 8.08 -2.39 -0.02 2.79 16 37 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 Total: -1.00 -57.22 288.72 2.66 -54.55 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.01 Total: 15.51 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 3.37 Total: -38.97 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -3.75 Total: -77.78 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -57.22 2.66 -54.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686278.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.602 kcal (2) G-P(sol) polarization free energy of solvation -57.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds