Wall clock time and date at job start Mon Mar 30 2020 02:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46847 * 110.99841 * 2 1 4 4 C 1.53032 * 109.52501 * 174.16065 * 3 2 1 5 5 C 1.53123 * 109.28095 * 59.17543 * 4 3 2 6 6 C 1.53114 * 109.16046 * 302.34769 * 5 4 3 7 7 C 1.46846 * 111.00097 * 235.78566 * 2 1 3 8 8 H 1.09008 * 109.45823 * 65.83669 * 7 2 1 9 9 C 1.52991 * 109.46393 * 305.85551 * 7 2 1 10 10 H 1.08998 * 109.47615 * 53.64920 * 9 7 2 11 11 C 1.50699 * 109.46956 * 173.64523 * 9 7 2 12 12 H 1.07998 * 120.00562 * 0.02562 * 11 9 7 13 13 C 1.37877 * 119.99970 * 179.72356 * 11 9 7 14 14 N 1.31509 * 120.00010 * 0.27671 * 13 11 9 15 15 Si 1.86802 * 120.00066 * 180.27815 * 13 11 9 16 16 H 1.48499 * 109.47207 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47356 * 120.00371 * 15 13 11 18 18 H 1.48506 * 109.47116 * 240.00029 * 15 13 11 19 19 C 1.52999 * 109.47175 * 293.64518 * 9 7 2 20 20 C 1.52999 * 117.49637 * 134.20940 * 19 9 7 21 21 C 1.52996 * 117.49642 * 65.54948 * 19 9 7 22 22 H 1.09003 * 109.47420 * 189.68018 * 1 2 3 23 23 H 1.08999 * 109.47591 * 309.68066 * 1 2 3 24 24 H 1.09002 * 109.47208 * 69.67976 * 1 2 3 25 25 H 1.09007 * 109.45993 * 294.17760 * 3 2 1 26 26 H 1.08998 * 109.46485 * 54.14488 * 3 2 1 27 27 H 1.09001 * 109.50382 * 179.11940 * 4 3 2 28 28 H 1.09008 * 109.50415 * 299.19898 * 4 3 2 29 29 H 1.09004 * 109.52099 * 62.25169 * 5 4 3 30 30 H 1.09002 * 109.52327 * 182.44196 * 5 4 3 31 31 H 1.09005 * 109.50646 * 297.71514 * 6 5 4 32 32 H 1.09003 * 109.50737 * 177.59170 * 6 5 4 33 33 H 0.97008 * 120.00322 * 179.97438 * 14 13 11 34 34 H 1.08995 * 115.55114 * 279.87381 * 19 9 7 35 35 H 1.08994 * 117.50328 * 359.97438 * 20 19 9 36 36 H 1.09004 * 117.49936 * 145.02340 * 20 19 9 37 37 H 1.09002 * 117.49860 * 214.97869 * 21 19 9 38 38 H 1.08997 * 117.50332 * 359.97304 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 0.1467 5 6 4.1188 0.5370 -1.0143 6 6 3.5182 -0.8714 -1.0207 7 6 1.9952 -0.7709 -1.1337 8 1 1.7326 -0.2708 -2.0660 9 6 1.3891 -2.1755 -1.1202 10 1 0.3021 -2.1020 -1.0878 11 6 1.8056 -2.9142 -2.3660 12 1 2.4395 -2.4304 -3.0943 13 6 1.3824 -4.2100 -2.5731 14 7 0.6108 -4.7994 -1.6861 15 14 1.9050 -5.1283 -4.1135 16 1 2.7653 -4.2495 -4.9459 17 1 2.6639 -6.3459 -3.7306 18 1 0.7005 -5.5194 -4.8893 19 6 1.8860 -2.9336 0.1123 20 6 0.8504 -3.7072 0.9309 21 6 1.4524 -2.4131 1.4841 22 1 -0.3634 -1.0130 0.1728 23 1 -0.3634 0.6561 0.7909 24 1 -0.3634 0.3569 -0.9637 25 1 1.7323 1.8608 -0.9376 26 1 1.5633 1.9257 0.8329 27 1 3.9097 2.3514 0.1310 28 1 3.7813 0.8575 1.0910 29 1 3.8887 1.0355 -1.9560 30 1 5.1997 0.4715 -0.8904 31 1 3.7813 -1.3835 -0.0952 32 1 3.9099 -1.4303 -1.8706 33 1 0.3127 -5.7110 -1.8319 34 1 2.8845 -3.3628 0.0294 35 1 -0.1849 -3.6757 0.5916 36 1 1.1677 -4.6450 1.3869 37 1 2.1656 -2.5000 2.3039 38 1 0.8136 -1.5303 1.5086 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260686281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:25 Heat of formation + Delta-G solvation = 21.411897 kcal Electronic energy + Delta-G solvation = -16703.950324 eV Core-core repulsion = 14353.765658 eV Total energy + Delta-G solvation = -2350.184666 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.97407 -35.80955 -32.94885 -32.56223 -30.92933 -27.29855 -25.86592 -23.52300 -22.21061 -21.21306 -20.81765 -19.56440 -18.00642 -16.43880 -15.13604 -14.47069 -14.41738 -14.05836 -13.82016 -13.53566 -13.11226 -12.47082 -12.30199 -11.99223 -11.77550 -11.53043 -11.06611 -10.93166 -10.77991 -10.67720 -10.26247 -10.14260 -10.06661 -9.87060 -9.48514 -9.31134 -9.22992 -8.48115 -8.38277 -8.04229 -7.46685 -5.89855 -3.96134 3.32207 3.40945 3.44009 4.45085 4.66117 5.31714 5.36215 5.37993 5.47640 5.51219 5.79367 5.88804 6.03717 6.04339 6.06050 6.22852 6.24350 6.33964 6.41809 6.50723 6.51195 6.56923 6.59336 6.70896 6.86948 6.95864 7.02990 7.21062 7.26991 7.42661 7.55550 7.70309 7.79863 7.90241 7.96876 8.12832 8.52539 9.06429 9.67168 11.15256 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029307 B = 0.010596 C = 0.009027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.186227 B = 2641.793315 C = 3100.916690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.529 5.529 3 C 0.055 3.945 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.100 4.100 7 C 0.100 3.900 8 H 0.023 0.977 9 C 0.082 3.918 10 H 0.030 0.970 11 C -0.517 4.517 12 H 0.054 0.946 13 C 0.068 3.932 14 N -0.872 5.872 15 Si 0.883 3.117 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.287 1.287 19 C -0.076 4.076 20 C -0.145 4.145 21 C -0.212 4.212 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.017 0.983 25 H 0.021 0.979 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.256 0.744 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 8.708 3.702 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.253 5.253 3 C -0.073 4.073 4 C -0.150 4.150 5 C -0.161 4.161 6 C -0.138 4.138 7 C -0.007 4.007 8 H 0.041 0.959 9 C 0.063 3.937 10 H 0.048 0.952 11 C -0.556 4.556 12 H 0.072 0.928 13 C -0.135 4.135 14 N -0.510 5.510 15 Si 0.711 3.289 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.213 1.213 19 C -0.095 4.095 20 C -0.182 4.182 21 C -0.249 4.249 22 H 0.099 0.901 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.551 8.311 4.165 9.640 hybrid contribution 0.015 -0.329 -1.618 1.651 sum 2.566 7.982 2.547 8.763 Atomic orbital electron populations 1.22408 0.88489 1.02711 0.98829 1.62068 1.06686 1.11321 1.45259 1.22034 0.95432 0.90743 0.99089 1.21531 0.94906 0.98974 0.99579 1.21662 0.99142 0.97666 0.97674 1.21539 0.94946 0.94586 1.02728 1.21762 0.94472 0.95935 0.88577 0.95868 1.18408 0.95330 0.87514 0.92447 0.95246 1.21093 1.31544 0.98292 1.04642 0.92781 1.24922 0.95107 0.97540 0.95918 1.70062 1.34219 1.12812 1.33881 0.86696 0.78319 0.79981 0.83909 1.19960 1.21220 1.21285 1.21910 0.96948 1.00346 0.90301 1.22423 0.99412 0.92650 1.03719 1.23207 1.04955 0.98492 0.98242 0.90053 0.92936 0.96458 0.96077 0.91953 0.92824 0.91416 0.93117 0.92828 0.91317 0.91215 0.93444 0.91138 0.89917 0.92191 0.92358 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 7.75 60.06 0.47 0.88 16 2 N -0.53 -9.56 2.98 -234.93 -0.70 -10.26 16 3 C 0.06 0.85 5.46 -3.84 -0.02 0.83 16 4 C -0.11 -1.61 6.09 -26.65 -0.16 -1.77 16 5 C -0.12 -1.93 6.00 -26.61 -0.16 -2.09 16 6 C -0.10 -1.91 4.84 -26.65 -0.13 -2.04 16 7 C 0.10 2.06 1.54 -67.72 -0.10 1.96 16 8 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 9 C 0.08 1.96 1.44 -91.78 -0.13 1.83 16 10 H 0.03 0.78 5.89 -51.93 -0.31 0.47 16 11 C -0.52 -13.77 7.88 -34.44 -0.27 -14.04 16 12 H 0.05 1.44 7.14 -52.49 -0.38 1.07 16 13 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 14 N -0.87 -24.25 10.97 55.43 0.61 -23.65 16 15 Si 0.88 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.08 -1.78 2.90 -90.62 -0.26 -2.05 16 20 C -0.14 -3.31 8.58 -26.69 -0.23 -3.54 16 21 C -0.21 -4.37 9.15 -26.69 -0.24 -4.61 16 22 H 0.08 1.56 5.16 -51.93 -0.27 1.29 16 23 H 0.05 0.77 7.99 -51.93 -0.42 0.36 16 24 H 0.02 0.30 8.13 -51.93 -0.42 -0.12 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.86 8.02 -51.93 -0.42 0.45 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.37 6.80 -51.93 -0.35 1.01 16 32 H 0.07 1.42 7.07 -51.93 -0.37 1.05 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.07 1.76 7.79 -51.93 -0.40 1.36 16 35 H 0.08 2.01 8.00 -51.93 -0.42 1.60 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.10 1.95 4.54 -51.93 -0.24 1.72 16 LS Contribution 281.72 15.07 4.25 4.25 Total: -1.00 -26.88 281.72 -8.71 -35.58 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.49 Total: 0.87 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -1.34 Total: -22.91 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: -0.09 Total: -33.91 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.88 -8.71 -35.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.995 kcal (2) G-P(sol) polarization free energy of solvation -26.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds