Wall clock time and date at job start Mon Mar 30 2020 02:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46845 * 111.00095 * 2 1 4 4 C 1.53035 * 109.52476 * 185.84003 * 3 2 1 5 5 C 1.53114 * 109.27886 * 300.82267 * 4 3 2 6 6 C 1.53119 * 109.16015 * 57.65364 * 5 4 3 7 7 C 1.46844 * 111.00289 * 124.21482 * 2 1 3 8 8 H 1.08997 * 109.45869 * 294.17495 * 7 2 1 9 9 C 1.53003 * 109.46260 * 54.14103 * 7 2 1 10 10 H 1.08998 * 109.47255 * 301.19669 * 9 7 2 11 11 C 1.50700 * 109.47020 * 181.19457 * 9 7 2 12 12 H 1.07994 * 120.00226 * 354.36356 * 11 9 7 13 13 C 1.37879 * 119.99638 * 174.36684 * 11 9 7 14 14 N 1.31519 * 120.00258 * 352.22286 * 13 11 9 15 15 Si 1.86797 * 119.99788 * 172.22986 * 13 11 9 16 16 H 1.48495 * 109.47189 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47145 * 119.99791 * 15 13 11 18 18 H 1.48497 * 109.47147 * 239.99619 * 15 13 11 19 19 C 1.53000 * 109.46899 * 61.19704 * 9 7 2 20 20 C 1.52996 * 117.50072 * 137.40233 * 19 9 7 21 21 C 1.52994 * 117.50217 * 68.77836 * 19 9 7 22 22 H 1.08997 * 109.46996 * 290.35185 * 1 2 3 23 23 H 1.09004 * 109.46925 * 50.35090 * 1 2 3 24 24 H 1.09000 * 109.46934 * 170.35408 * 1 2 3 25 25 H 1.09000 * 109.46487 * 305.86181 * 3 2 1 26 26 H 1.09009 * 109.45942 * 65.83485 * 3 2 1 27 27 H 1.09003 * 109.50058 * 60.76676 * 4 3 2 28 28 H 1.08999 * 109.50280 * 180.84536 * 4 3 2 29 29 H 1.09005 * 109.52649 * 177.55681 * 5 4 3 30 30 H 1.08998 * 109.52845 * 297.74992 * 5 4 3 31 31 H 1.09002 * 109.50475 * 182.40063 * 6 5 4 32 32 H 1.09005 * 109.50107 * 62.28515 * 6 5 4 33 33 H 0.96990 * 119.99619 * 180.02562 * 14 13 11 34 34 H 1.09002 * 115.55185 * 283.11031 * 19 9 7 35 35 H 1.08997 * 117.49764 * 359.97438 * 20 19 9 36 36 H 1.09001 * 117.50287 * 145.01728 * 20 19 9 37 37 H 1.08997 * 117.50319 * 214.97820 * 21 19 9 38 38 H 1.09007 * 117.49546 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5369 1.0143 6 6 3.5181 -0.8715 1.0207 7 6 1.9953 -0.7708 1.1336 8 1 1.7326 -0.2709 2.0659 9 6 1.3891 -2.1756 1.1202 10 1 0.3032 -2.1033 1.1803 11 6 1.9066 -2.9573 2.3002 12 1 2.6666 -2.5316 2.9386 13 6 1.4097 -4.2159 2.5647 14 7 0.3810 -4.6731 1.8846 15 14 2.1975 -5.2717 3.8891 16 1 3.3300 -4.5328 4.5026 17 1 1.1901 -5.5899 4.9328 18 1 2.6988 -6.5319 3.2845 19 6 1.7820 -2.8882 -0.1754 20 6 2.2064 -4.3546 -0.0745 21 6 3.2521 -3.2730 -0.3523 22 1 -0.3633 0.3574 0.9635 23 1 -0.3633 0.6558 -0.7913 24 1 -0.3633 -1.0131 -0.1722 25 1 1.5634 1.9258 -0.8329 26 1 1.7326 1.8607 0.9378 27 1 3.7813 0.8568 -1.0907 28 1 3.9098 2.3512 -0.1316 29 1 5.1998 0.4713 0.8904 30 1 3.8888 1.0353 1.9560 31 1 3.9100 -1.4304 1.8706 32 1 3.7814 -1.3836 0.0951 33 1 0.0313 -5.5584 2.0710 34 1 1.2310 -2.5835 -1.0652 35 1 2.2062 -4.8116 0.9151 36 1 1.9345 -5.0152 -0.8978 37 1 3.6683 -3.2219 -1.3584 38 1 3.9395 -3.0188 0.4546 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260686283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:26 Heat of formation + Delta-G solvation = 23.035010 kcal Electronic energy + Delta-G solvation = -16783.854111 eV Core-core repulsion = 14433.739829 eV Total energy + Delta-G solvation = -2350.114282 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61585 -37.93168 -34.41337 -34.12515 -32.59221 -28.93153 -27.35337 -25.90089 -23.87657 -22.73420 -22.50190 -20.77888 -19.86637 -18.11037 -16.75363 -16.31448 -16.14006 -15.93718 -15.28871 -14.94228 -14.60685 -14.28390 -13.87124 -13.74805 -13.27361 -13.22543 -12.84418 -12.50568 -12.41476 -12.36290 -11.92828 -11.84779 -11.67166 -11.46116 -11.12636 -11.00702 -10.71389 -10.22151 -10.03804 -9.88905 -9.02987 -8.04431 -6.10872 1.38644 1.43548 1.51638 2.43866 3.21987 3.24453 3.56716 4.07660 4.16346 4.18860 4.37507 4.45117 4.57092 4.63107 4.68810 4.72382 4.79209 4.83764 4.88054 4.99878 5.07165 5.10255 5.19330 5.21061 5.27231 5.28069 5.45196 5.56114 5.59828 5.67664 5.75359 5.88841 5.93175 6.10589 6.32598 6.47853 6.56283 7.00664 7.51694 9.02023 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033015 B = 0.010096 C = 0.009654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.898660 B = 2772.834317 C = 2899.640113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.540 5.540 3 C 0.052 3.948 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.113 4.113 7 C 0.110 3.890 8 H -0.001 1.001 9 C 0.080 3.920 10 H 0.001 0.999 11 C -0.519 4.519 12 H 0.050 0.950 13 C 0.032 3.968 14 N -0.902 5.902 15 Si 0.928 3.072 16 H -0.268 1.268 17 H -0.286 1.286 18 H -0.279 1.279 19 C -0.100 4.100 20 C -0.182 4.182 21 C -0.176 4.176 22 H 0.010 0.990 23 H 0.082 0.918 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.019 0.981 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.257 0.743 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.106 9.204 -4.043 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.265 5.265 3 C -0.076 4.076 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.150 4.150 7 C 0.002 3.998 8 H 0.017 0.983 9 C 0.062 3.938 10 H 0.019 0.981 11 C -0.558 4.558 12 H 0.068 0.932 13 C -0.167 4.167 14 N -0.541 5.541 15 Si 0.754 3.246 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.205 1.205 19 C -0.119 4.119 20 C -0.219 4.219 21 C -0.212 4.212 22 H 0.029 0.971 23 H 0.101 0.899 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.146 8.836 -4.481 11.164 hybrid contribution -0.501 -0.625 1.629 1.815 sum 4.645 8.211 -2.852 9.856 Atomic orbital electron populations 1.22286 0.88097 1.01778 0.99500 1.61955 1.07193 1.13423 1.43937 1.22190 0.96565 0.88850 0.99960 1.21535 0.93706 1.00527 0.98744 1.21659 1.00275 0.95668 0.98327 1.21927 0.93605 0.96860 1.02621 1.21481 0.95767 0.94014 0.88512 0.98280 1.18232 0.94078 0.89947 0.91586 0.98051 1.21365 1.21752 1.01056 1.11606 0.93172 1.25350 0.95097 0.99063 0.97165 1.70222 1.23556 1.18236 1.42091 0.85981 0.78928 0.79596 0.80047 1.19221 1.21243 1.20476 1.21788 0.95515 0.96832 0.97726 1.23239 1.03968 0.92555 1.02134 1.22951 0.92659 1.05004 1.00617 0.97132 0.89921 0.92940 0.89649 0.96239 0.91440 0.89693 0.90789 0.93381 0.93217 0.89551 0.93317 0.91995 0.87692 0.92888 0.89802 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 8.91 127.69 1.14 2.25 16 2 N -0.54 -19.46 4.37 -897.18 -3.92 -23.37 16 3 C 0.05 1.49 5.46 86.33 0.47 1.96 16 4 C -0.11 -2.74 6.09 30.64 0.19 -2.55 16 5 C -0.12 -3.53 6.00 30.67 0.18 -3.34 16 6 C -0.11 -4.18 3.68 30.64 0.11 -4.07 16 7 C 0.11 4.59 1.61 44.94 0.07 4.67 16 8 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 9 C 0.08 3.95 1.46 -11.54 -0.02 3.93 16 10 H 0.00 0.08 6.33 -2.39 -0.02 0.07 16 11 C -0.52 -27.56 6.78 25.60 0.17 -27.38 16 12 H 0.05 2.67 6.60 -2.91 -0.02 2.65 16 13 C 0.03 1.72 3.05 84.65 0.26 1.98 16 14 N -0.90 -50.90 11.28 21.45 0.24 -50.65 16 15 Si 0.93 42.82 29.38 68.60 2.02 44.84 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 17 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 C -0.10 -4.68 5.11 -10.80 -0.06 -4.74 16 20 C -0.18 -8.76 8.53 30.59 0.26 -8.49 16 21 C -0.18 -7.35 7.49 30.59 0.23 -7.12 16 22 H 0.01 0.37 8.13 -2.39 -0.02 0.35 16 23 H 0.08 2.34 7.99 -2.39 -0.02 2.32 16 24 H 0.05 2.10 6.47 -2.39 -0.02 2.08 16 25 H 0.09 2.08 8.02 -2.39 -0.02 2.06 16 26 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 2.01 6.40 -2.39 -0.02 1.99 16 32 H 0.09 3.24 4.64 -2.38 -0.01 3.23 16 33 H 0.26 13.99 8.31 -92.72 -0.77 13.22 16 34 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.11 5.59 3.85 -2.39 -0.01 5.58 16 36 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.09 3.87 5.72 -2.38 -0.01 3.86 16 Total: -1.00 -57.36 276.27 2.37 -54.99 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 1.02 Total: 17.11 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 3.01 Total: -42.91 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -3.67 Total: -74.03 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.02 Total: 44.84 kcal Total: -57.36 2.37 -54.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260686283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.025 kcal (2) G-P(sol) polarization free energy of solvation -57.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds