Wall clock time and date at job start Mon Mar 30 2020 02:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.46923 * 2 1 4 4 C 1.46834 * 110.99937 * 45.71892 * 3 2 1 5 5 C 1.53087 * 109.49251 * 185.74164 * 4 3 2 6 6 H 1.08992 * 110.01568 * 180.26930 * 5 4 3 7 7 C 1.53089 * 109.29138 * 59.87822 * 5 4 3 8 8 C 1.52987 * 109.45561 * 301.15588 * 7 5 4 9 9 C 1.52996 * 109.57158 * 300.29640 * 8 7 5 10 10 C 1.53085 * 109.42437 * 59.72587 * 9 8 7 11 11 H 1.08995 * 109.60381 * 179.43157 * 10 9 8 12 12 C 1.46844 * 110.99608 * 170.00418 * 3 2 1 13 13 C 1.53191 * 109.13622 * 300.56220 * 5 4 3 14 14 C 1.50706 * 109.56339 * 298.29896 * 13 5 4 15 15 H 1.07995 * 119.99844 * 359.77197 * 14 13 5 16 16 C 1.37872 * 119.99913 * 179.77078 * 14 13 5 17 17 N 1.31515 * 120.00014 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99992 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47117 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47100 * 120.00084 * 18 16 14 21 21 H 1.48499 * 109.46902 * 239.99688 * 18 16 14 22 22 H 1.09001 * 109.47245 * 59.99966 * 1 2 3 23 23 H 1.09001 * 109.46893 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47041 * 299.99599 * 1 2 3 25 25 H 1.09003 * 109.46822 * 239.99916 * 2 1 3 26 26 H 1.09001 * 109.47245 * 120.00034 * 2 1 3 27 27 H 1.08995 * 109.47351 * 65.73186 * 4 3 2 28 28 H 1.09002 * 109.46644 * 305.73990 * 4 3 2 29 29 H 1.09001 * 109.47035 * 61.15591 * 7 5 4 30 30 H 1.09003 * 109.47049 * 181.15745 * 7 5 4 31 31 H 1.09005 * 109.45390 * 60.32687 * 8 7 5 32 32 H 1.08994 * 109.45343 * 180.26337 * 8 7 5 33 33 H 1.08998 * 109.47521 * 179.70465 * 9 8 7 34 34 H 1.08997 * 109.47955 * 299.72334 * 9 8 7 35 35 H 1.09001 * 109.46551 * 54.26203 * 12 3 2 36 36 H 1.09000 * 109.45381 * 294.28245 * 12 3 2 37 37 H 1.09002 * 109.56432 * 178.06913 * 13 5 4 38 38 H 0.97005 * 119.99975 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2927 2.2001 0.9814 5 6 1.7278 3.6623 0.8536 6 1 1.1965 4.2746 1.5821 7 6 1.4176 4.1606 -0.5603 8 6 2.1549 3.2908 -1.5803 9 6 3.6615 3.3681 -1.3260 10 6 3.9651 2.8713 0.0898 11 1 5.0390 2.9157 0.2706 12 6 3.4680 1.4311 0.2380 13 6 3.2363 3.7608 1.1020 14 6 3.5486 3.2975 2.5016 15 1 2.7516 2.9689 3.1521 16 6 4.8519 3.2930 2.9515 17 7 5.8225 3.6927 2.1591 18 14 5.2392 2.7180 4.6861 19 1 3.9812 2.3226 5.3690 20 1 6.1586 1.5533 4.6278 21 1 5.8857 3.8216 5.4406 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.5141 1.8417 1.9867 28 1 0.2214 2.1225 0.7958 29 1 0.3441 4.1001 -0.7394 30 1 1.7451 5.1954 -0.6608 31 1 1.8229 2.2571 -1.4832 32 1 1.9377 3.6485 -2.5867 33 1 4.1849 2.7438 -2.0502 34 1 3.9949 4.4008 -1.4283 35 1 3.9756 0.7953 -0.4874 36 1 3.6818 1.0749 1.2457 37 1 3.5597 4.7945 0.9789 38 1 6.7394 3.6892 2.4756 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260918136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:26 Heat of formation + Delta-G solvation = 0.009145 kcal Electronic energy + Delta-G solvation = -17067.571659 eV Core-core repulsion = 14716.458900 eV Total energy + Delta-G solvation = -2351.112759 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73226 -35.07196 -32.82908 -31.42843 -30.40123 -28.84662 -25.43014 -24.92623 -23.22456 -21.13331 -20.41129 -19.70844 -17.53911 -16.07473 -15.53472 -14.58477 -14.15163 -13.78199 -13.59602 -13.49092 -12.91738 -12.42701 -12.04471 -11.94762 -11.74726 -11.46913 -11.30011 -10.97719 -10.83129 -10.75772 -10.50381 -10.08858 -10.07188 -9.97501 -9.74516 -9.62406 -9.07470 -8.64030 -8.43641 -8.20825 -6.98899 -5.95553 -4.00375 3.28057 3.37015 3.39925 4.44304 4.67245 5.33376 5.41469 5.53069 5.66849 5.79373 5.91735 5.98188 6.06322 6.23247 6.26492 6.27333 6.34941 6.41815 6.49774 6.59353 6.65471 6.73724 6.80867 6.86815 6.95790 7.00414 7.09555 7.20656 7.36231 7.61243 7.70747 7.75992 7.81503 7.94899 8.09519 8.24378 8.50566 9.02412 9.62645 11.09523 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028672 B = 0.011762 C = 0.010098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.331482 B = 2379.958633 C = 2772.270035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.041 3.959 3 N -0.519 5.519 4 C 0.067 3.933 5 C -0.081 4.081 6 H 0.054 0.946 7 C -0.098 4.098 8 C -0.148 4.148 9 C -0.102 4.102 10 C -0.078 4.078 11 H 0.101 0.899 12 C 0.074 3.926 13 C 0.058 3.942 14 C -0.506 4.506 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.882 3.118 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.285 1.285 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.040 0.960 31 H 0.131 0.869 32 H 0.019 0.981 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.025 0.975 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 -4.613 -4.765 9.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.087 4.087 3 N -0.243 5.243 4 C -0.061 4.061 5 C -0.100 4.100 6 H 0.073 0.927 7 C -0.136 4.136 8 C -0.185 4.185 9 C -0.139 4.139 10 C -0.097 4.097 11 H 0.118 0.882 12 C -0.053 4.053 13 C 0.040 3.960 14 C -0.544 4.544 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.711 3.289 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.211 1.211 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.148 0.852 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.043 0.957 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.073 -4.403 -5.208 9.826 hybrid contribution 0.568 -0.543 1.793 1.957 sum -6.505 -4.946 -3.415 8.857 Atomic orbital electron populations 1.21922 0.95891 1.00865 1.02355 1.22117 0.95057 0.91447 1.00065 1.62499 1.05773 1.07860 1.48176 1.22091 0.96138 0.94279 0.93578 1.21279 1.00054 0.93782 0.94874 0.92713 1.21396 0.97761 0.98203 0.96217 1.22371 0.95793 1.05584 0.94758 1.21460 0.95825 0.98921 0.97719 1.21262 1.03014 0.92707 0.92743 0.88153 1.22022 0.85604 0.98812 0.98836 1.18717 0.88184 0.95597 0.93535 1.21235 0.92306 1.42858 0.97997 0.92916 1.24927 0.96590 0.95496 0.96819 1.69880 0.99774 1.47850 1.35243 0.86690 0.78274 0.78412 0.85554 1.19984 1.21191 1.21100 0.92143 0.93130 0.92344 0.91573 0.95495 0.94324 0.92457 0.94448 0.94137 0.85207 0.96249 0.94679 0.94310 0.93589 0.93909 0.95721 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.16 37.16 0.34 -1.65 16 2 C 0.04 0.63 5.99 -3.82 -0.02 0.61 16 3 N -0.52 -9.50 1.28 -234.62 -0.30 -9.80 16 4 C 0.07 1.27 4.05 -3.82 -0.02 1.26 16 5 C -0.08 -1.70 2.75 -90.43 -0.25 -1.95 16 6 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 7 C -0.10 -1.86 5.46 -26.69 -0.15 -2.01 16 8 C -0.15 -2.77 5.57 -26.74 -0.15 -2.92 16 9 C -0.10 -2.09 5.46 -26.69 -0.15 -2.24 16 10 C -0.08 -1.80 2.59 -90.44 -0.23 -2.04 16 11 H 0.10 2.64 6.10 -51.93 -0.32 2.32 16 12 C 0.07 1.56 4.63 -3.82 -0.02 1.54 16 13 C 0.06 1.43 1.85 -91.57 -0.17 1.26 16 14 C -0.51 -13.44 6.70 -34.44 -0.23 -13.68 16 15 H 0.05 1.41 6.83 -52.49 -0.36 1.05 16 16 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 17 N -0.89 -24.97 11.35 55.43 0.63 -24.34 16 18 Si 0.88 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.78 6.21 -51.93 -0.32 0.46 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.04 0.82 6.73 -51.93 -0.35 0.47 16 28 H 0.06 0.97 5.82 -51.93 -0.30 0.67 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.13 2.44 4.75 -62.74 -0.30 2.14 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 36 H 0.04 1.00 7.28 -51.93 -0.38 0.62 16 37 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 272.64 15.07 4.11 4.11 Total: -1.00 -26.90 272.64 -8.25 -35.15 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.53 Total: -1.02 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.13 Total: -20.20 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.33 Total: -34.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -26.90 -8.25 -35.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260918136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.156 kcal (2) G-P(sol) polarization free energy of solvation -26.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds