Wall clock time and date at job start Mon Mar 30 2020 02:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.46923 * 2 1 4 4 C 1.46834 * 110.99937 * 45.71892 * 3 2 1 5 5 C 1.53087 * 109.49251 * 185.74164 * 4 3 2 6 6 H 1.08992 * 110.01568 * 180.26930 * 5 4 3 7 7 C 1.53089 * 109.29138 * 59.87822 * 5 4 3 8 8 C 1.52987 * 109.45561 * 301.15588 * 7 5 4 9 9 C 1.52996 * 109.57158 * 300.29640 * 8 7 5 10 10 C 1.53085 * 109.42437 * 59.72587 * 9 8 7 11 11 H 1.08995 * 109.60381 * 179.43157 * 10 9 8 12 12 C 1.46844 * 110.99608 * 170.00418 * 3 2 1 13 13 C 1.53191 * 109.13622 * 300.56220 * 5 4 3 14 14 C 1.50706 * 109.56339 * 298.29896 * 13 5 4 15 15 H 1.07995 * 119.99844 * 359.77197 * 14 13 5 16 16 C 1.37872 * 119.99913 * 179.77078 * 14 13 5 17 17 N 1.31515 * 120.00014 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99992 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47117 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47100 * 120.00084 * 18 16 14 21 21 H 1.48499 * 109.46902 * 239.99688 * 18 16 14 22 22 H 1.09001 * 109.47245 * 59.99966 * 1 2 3 23 23 H 1.09001 * 109.46893 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47041 * 299.99599 * 1 2 3 25 25 H 1.09003 * 109.46822 * 239.99916 * 2 1 3 26 26 H 1.09001 * 109.47245 * 120.00034 * 2 1 3 27 27 H 1.08995 * 109.47351 * 65.73186 * 4 3 2 28 28 H 1.09002 * 109.46644 * 305.73990 * 4 3 2 29 29 H 1.09001 * 109.47035 * 61.15591 * 7 5 4 30 30 H 1.09003 * 109.47049 * 181.15745 * 7 5 4 31 31 H 1.09005 * 109.45390 * 60.32687 * 8 7 5 32 32 H 1.08994 * 109.45343 * 180.26337 * 8 7 5 33 33 H 1.08998 * 109.47521 * 179.70465 * 9 8 7 34 34 H 1.08997 * 109.47955 * 299.72334 * 9 8 7 35 35 H 1.09001 * 109.46551 * 54.26203 * 12 3 2 36 36 H 1.09000 * 109.45381 * 294.28245 * 12 3 2 37 37 H 1.09002 * 109.56432 * 178.06913 * 13 5 4 38 38 H 0.97005 * 119.99975 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2927 2.2001 0.9814 5 6 1.7278 3.6623 0.8536 6 1 1.1965 4.2746 1.5821 7 6 1.4176 4.1606 -0.5603 8 6 2.1549 3.2908 -1.5803 9 6 3.6615 3.3681 -1.3260 10 6 3.9651 2.8713 0.0898 11 1 5.0390 2.9157 0.2706 12 6 3.4680 1.4311 0.2380 13 6 3.2363 3.7608 1.1020 14 6 3.5486 3.2975 2.5016 15 1 2.7516 2.9689 3.1521 16 6 4.8519 3.2930 2.9515 17 7 5.8225 3.6927 2.1591 18 14 5.2392 2.7180 4.6861 19 1 3.9812 2.3226 5.3690 20 1 6.1586 1.5533 4.6278 21 1 5.8857 3.8216 5.4406 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.5141 1.8417 1.9867 28 1 0.2214 2.1225 0.7958 29 1 0.3441 4.1001 -0.7394 30 1 1.7451 5.1954 -0.6608 31 1 1.8229 2.2571 -1.4832 32 1 1.9377 3.6485 -2.5867 33 1 4.1849 2.7438 -2.0502 34 1 3.9949 4.4008 -1.4283 35 1 3.9756 0.7953 -0.4874 36 1 3.6818 1.0749 1.2457 37 1 3.5597 4.7945 0.9789 38 1 6.7394 3.6892 2.4756 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260918136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:26 Heat of formation + Delta-G solvation = -13.045241 kcal Electronic energy + Delta-G solvation = -17068.137739 eV Core-core repulsion = 14716.458900 eV Total energy + Delta-G solvation = -2351.678839 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.38259 -36.55597 -34.80316 -33.11533 -31.97435 -30.41137 -27.11268 -26.72460 -24.80449 -22.76010 -22.08548 -21.19582 -19.27784 -17.98615 -17.20507 -16.47868 -15.65245 -15.34054 -15.16197 -14.95354 -14.63269 -14.14326 -13.81153 -13.61454 -13.27359 -12.98892 -12.78625 -12.65814 -12.47275 -12.35291 -12.14679 -11.79267 -11.61628 -11.59495 -11.46387 -11.34166 -10.89644 -10.55670 -10.22912 -10.16829 -8.53998 -8.04739 -6.16289 1.34587 1.37809 1.47127 2.41689 3.20384 3.21107 4.09441 4.17174 4.29808 4.38466 4.45313 4.56984 4.60807 4.72859 4.74558 4.85888 4.87942 5.00460 5.03443 5.08157 5.14280 5.17112 5.21881 5.34103 5.37634 5.41814 5.45635 5.53148 5.63952 5.66894 5.90284 5.93465 6.12516 6.25317 6.41079 6.44440 6.51208 6.94476 7.49354 8.98682 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028672 B = 0.011762 C = 0.010098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.331482 B = 2379.958633 C = 2772.270035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.037 3.963 3 N -0.511 5.511 4 C 0.074 3.926 5 C -0.083 4.083 6 H 0.048 0.952 7 C -0.094 4.094 8 C -0.140 4.140 9 C -0.098 4.098 10 C -0.078 4.078 11 H 0.061 0.939 12 C 0.085 3.915 13 C 0.056 3.944 14 C -0.513 4.513 15 H 0.047 0.953 16 C 0.016 3.984 17 N -0.915 5.915 18 Si 0.940 3.060 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.017 0.983 27 H 0.013 0.987 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.139 0.861 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.021 0.979 35 H 0.061 0.939 36 H 0.011 0.989 37 H -0.020 1.020 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 -6.020 -5.657 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 N -0.235 5.235 4 C -0.053 4.053 5 C -0.102 4.102 6 H 0.066 0.934 7 C -0.132 4.132 8 C -0.178 4.178 9 C -0.136 4.136 10 C -0.098 4.098 11 H 0.079 0.921 12 C -0.042 4.042 13 C 0.037 3.963 14 C -0.552 4.552 15 H 0.065 0.935 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.767 3.233 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.036 0.964 27 H 0.032 0.968 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.156 0.844 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.029 0.971 37 H -0.002 1.002 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.049 -5.815 -6.100 12.366 hybrid contribution 1.194 -0.090 2.074 2.395 sum -7.855 -5.904 -4.026 10.620 Atomic orbital electron populations 1.21877 0.93521 1.02564 1.02434 1.22276 0.97021 0.89261 1.00457 1.62460 1.03860 1.09949 1.47261 1.22019 0.97928 0.92817 0.92555 1.21240 0.97081 0.95470 0.96367 0.93374 1.21370 0.99612 0.97555 0.94648 1.22326 0.93677 1.06061 0.95696 1.21412 0.97948 0.98006 0.96200 1.21084 1.00523 0.94125 0.94018 0.92128 1.21781 0.87795 0.97196 0.97456 1.18667 0.91232 0.93161 0.93231 1.21482 0.92204 1.42386 0.99078 0.93521 1.25613 0.96626 0.95831 1.00194 1.70030 0.99915 1.48866 1.36722 0.85772 0.78081 0.77911 0.81511 1.19444 1.20854 1.20926 0.91275 0.90795 0.92894 0.89870 0.96418 0.96837 0.89169 0.91447 0.95181 0.84421 0.94117 0.93285 0.95977 0.92014 0.97113 1.00182 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.16 71.98 0.66 -2.55 16 2 C 0.04 1.03 5.99 86.30 0.52 1.55 16 3 N -0.51 -17.64 1.28 -896.21 -1.15 -18.79 16 4 C 0.07 2.72 4.05 86.34 0.35 3.07 16 5 C -0.08 -3.43 2.75 -10.67 -0.03 -3.46 16 6 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 7 C -0.09 -3.38 5.46 30.62 0.17 -3.22 16 8 C -0.14 -4.88 5.57 30.59 0.17 -4.71 16 9 C -0.10 -3.98 5.46 30.62 0.17 -3.82 16 10 C -0.08 -3.69 2.59 -10.68 -0.03 -3.72 16 11 H 0.06 3.34 6.10 -2.39 -0.01 3.32 16 12 C 0.09 3.56 4.63 86.34 0.40 3.96 16 13 C 0.06 2.82 1.85 -11.41 -0.02 2.80 16 14 C -0.51 -28.18 6.70 25.60 0.17 -28.01 16 15 H 0.05 2.56 6.83 -2.91 -0.02 2.54 16 16 C 0.02 0.87 5.31 84.65 0.45 1.32 16 17 N -0.92 -53.50 11.35 21.45 0.24 -53.26 16 18 Si 0.94 44.30 29.54 68.60 2.03 46.33 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 24 H 0.05 1.22 6.21 -2.39 -0.01 1.20 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.02 0.53 8.08 -2.39 -0.02 0.51 16 27 H 0.01 0.56 6.73 -2.39 -0.02 0.54 16 28 H 0.09 2.75 5.82 -2.39 -0.01 2.73 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.14 4.65 4.75 -23.74 -0.11 4.53 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 36 H 0.01 0.51 7.28 -2.39 -0.02 0.49 16 37 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 38 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 Total: -1.00 -59.58 272.64 5.00 -54.57 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.91 Total: 7.92 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 2.97 Total: -36.78 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -0.90 Total: -72.05 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -59.58 5.00 -54.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260918136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.527 kcal (2) G-P(sol) polarization free energy of solvation -59.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds