Wall clock time and date at job start Mon Mar 30 2020 03:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30933 * 1 3 3 Si 1.86799 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47277 * 299.99825 * 3 2 1 6 6 H 1.48494 * 109.46971 * 60.00026 * 3 2 1 7 7 C 1.39808 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.41092 * 119.99936 * 0.02562 * 7 2 1 10 10 N 1.34812 * 126.19604 * 359.95368 * 9 7 2 11 11 C 1.32124 * 109.26327 * 180.02562 * 10 9 7 12 12 N 1.34301 * 132.11229 * 180.02562 * 11 10 9 13 13 N 1.28546 * 121.16029 * 179.76849 * 12 11 10 14 14 C 1.33321 * 121.90144 * 0.49896 * 13 12 11 15 15 C 1.35638 * 120.19400 * 359.47974 * 14 13 12 16 16 N 1.36845 * 118.56344 * 0.26209 * 15 14 13 17 17 C 1.35569 * 133.16989 * 179.97438 * 16 15 14 18 18 Cl 1.73600 * 126.70593 * 0.02562 * 17 16 15 19 19 H 0.97004 * 119.99836 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.90709 * 179.76596 * 14 13 12 21 21 H 1.07996 * 120.71656 * 180.23362 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 3.7034 1.3462 0.0006 5 1 1.8848 2.3964 -1.2125 6 1 1.8847 2.3963 1.2125 7 6 2.0083 -1.2108 0.0005 8 1 3.0883 -1.2109 0.0010 9 6 1.3027 -2.4327 0.0005 10 7 -0.0375 -2.5780 0.0009 11 6 -0.3364 -3.8650 0.0014 12 7 -1.5105 -4.5170 0.0014 13 7 -1.5581 -5.8015 -0.0026 14 6 -0.4531 -6.5475 0.0029 15 6 0.7682 -5.9575 0.0024 16 7 0.8346 -4.5907 0.0016 17 6 1.8672 -3.7123 0.0014 18 17 3.5593 -4.1000 0.0015 19 1 -0.4850 0.8401 -0.0004 20 1 -0.5307 -7.6247 0.0031 21 1 1.6688 -6.5536 0.0031 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261026468.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:07 Heat of formation + Delta-G solvation = 115.136910 kcal Electronic energy + Delta-G solvation = -12665.085707 eV Core-core repulsion = 10183.208889 eV Total energy + Delta-G solvation = -2481.876817 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 224.016 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.87646 -37.98115 -35.84435 -34.38577 -33.30214 -30.59353 -28.74269 -26.94817 -23.71395 -22.78477 -20.77426 -18.55366 -17.22001 -16.88751 -15.62069 -15.15250 -15.04743 -14.26259 -13.65571 -13.21932 -12.75043 -11.62541 -11.57616 -11.25941 -11.07384 -10.97327 -10.72759 -10.70102 -10.39202 -9.69820 -9.46579 -8.64265 -8.27390 -7.20893 -6.93563 -4.83455 0.91913 1.83906 2.38602 2.86278 2.95868 3.01842 3.53764 3.65952 3.73694 4.38126 4.54029 4.97865 5.03431 5.10349 5.74520 6.06798 6.25312 6.64483 6.72493 6.91442 7.34315 7.88988 8.12614 8.41147 9.00663 9.51917 9.93983 Molecular weight = 224.02amu Principal moments of inertia in cm(-1) A = 0.035054 B = 0.010638 C = 0.008185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.579081 B = 2631.477860 C = 3420.215314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.060 3.940 3 Si 0.923 3.077 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.380 4.380 8 H 0.103 0.897 9 C 0.266 3.734 10 N -0.449 5.449 11 C 0.335 3.665 12 N -0.213 5.213 13 N -0.223 5.223 14 C -0.055 4.055 15 C 0.014 3.986 16 N -0.331 5.331 17 C -0.139 4.139 18 Cl -0.030 7.030 19 H 0.286 0.714 20 H 0.173 0.827 21 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.711 -4.194 0.005 7.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.167 4.167 3 Si 0.746 3.254 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.413 4.413 8 H 0.121 0.879 9 C 0.139 3.861 10 N -0.181 5.181 11 C -0.015 4.015 12 N -0.077 5.077 13 N -0.082 5.082 14 C -0.212 4.212 15 C -0.128 4.128 16 N -0.011 5.011 17 C -0.288 4.288 18 Cl -0.002 7.002 19 H 0.097 0.903 20 H 0.190 0.810 21 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.489 -3.360 0.001 4.844 hybrid contribution 2.692 -0.442 0.002 2.728 sum 6.182 -3.803 0.004 7.258 Atomic orbital electron populations 1.70065 1.07368 1.29641 1.25807 1.26173 0.95161 1.01851 0.93561 0.85991 0.80688 0.79740 0.78996 1.17878 1.19371 1.19376 1.19177 0.94927 0.87515 1.39659 0.87900 1.18428 0.86882 0.89384 0.91456 1.71761 1.12505 1.06288 1.27580 1.24704 0.82387 0.90317 1.04046 1.73971 1.16537 1.01260 1.15961 1.73195 1.26368 0.98649 1.10000 1.22931 0.88117 1.01917 1.08204 1.22440 1.01230 0.82542 1.06593 1.43522 1.10951 1.06147 1.40512 1.21778 0.80157 0.89331 1.37542 1.98239 1.09465 1.94486 1.98059 0.90260 0.80999 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.00 11.93 55.54 0.66 -17.33 14 2 C 0.06 1.41 5.49 -17.35 -0.10 1.32 14 3 Si 0.92 17.06 29.56 -169.99 -5.02 12.03 14 4 H -0.26 -4.56 7.11 56.52 0.40 -4.16 14 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 14 6 H -0.27 -4.91 7.11 56.52 0.40 -4.51 14 7 C -0.38 -9.32 9.23 -37.91 -0.35 -9.67 14 8 H 0.10 2.31 7.77 -52.48 -0.41 1.91 14 9 C 0.27 6.95 6.67 -84.87 -0.57 6.39 14 10 N -0.45 -12.59 9.50 -11.88 -0.11 -12.70 14 11 C 0.33 8.69 8.98 -321.84 -2.89 5.80 14 12 N -0.21 -5.33 11.68 29.89 0.35 -4.98 14 13 N -0.22 -4.79 11.59 30.21 0.35 -4.44 14 14 C -0.05 -0.95 11.21 -17.83 -0.20 -1.15 14 15 C 0.01 0.26 11.10 -16.24 -0.18 0.08 14 16 N -0.33 -7.58 2.94 -60.03 -0.18 -7.76 14 17 C -0.14 -3.24 7.74 -15.30 -0.12 -3.36 14 18 Cl -0.03 -0.57 29.07 -51.86 -1.51 -2.07 14 19 H 0.29 6.49 8.30 -40.82 -0.34 6.15 14 20 H 0.17 2.14 8.06 -52.49 -0.42 1.71 14 21 H 0.16 2.31 8.06 -52.49 -0.42 1.89 14 LS Contribution 220.20 15.07 3.32 3.32 Total: -1.00 -29.12 220.20 -6.93 -36.05 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: -0.39 Total: -1.52 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -4.40 Total: -0.60 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 1.07 Total: -47.21 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.02 Total: 12.03 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.51 Total: -2.07 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.12 -6.93 -36.05 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026468.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.182 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds