Wall clock time and date at job start Mon Mar 30 2020 03:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30933 * 1 3 3 Si 1.86799 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47277 * 299.99825 * 3 2 1 6 6 H 1.48494 * 109.46971 * 60.00026 * 3 2 1 7 7 C 1.39808 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00234 * 180.02562 * 7 2 1 9 9 C 1.41092 * 119.99936 * 0.02562 * 7 2 1 10 10 N 1.34812 * 126.19604 * 359.95368 * 9 7 2 11 11 C 1.32124 * 109.26327 * 180.02562 * 10 9 7 12 12 N 1.34301 * 132.11229 * 180.02562 * 11 10 9 13 13 N 1.28546 * 121.16029 * 179.76849 * 12 11 10 14 14 C 1.33321 * 121.90144 * 0.49896 * 13 12 11 15 15 C 1.35638 * 120.19400 * 359.47974 * 14 13 12 16 16 N 1.36845 * 118.56344 * 0.26209 * 15 14 13 17 17 C 1.35569 * 133.16989 * 179.97438 * 16 15 14 18 18 Cl 1.73600 * 126.70593 * 0.02562 * 17 16 15 19 19 H 0.97004 * 119.99836 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.90709 * 179.76596 * 14 13 12 21 21 H 1.07996 * 120.71656 * 180.23362 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 3.7034 1.3462 0.0006 5 1 1.8848 2.3964 -1.2125 6 1 1.8847 2.3963 1.2125 7 6 2.0083 -1.2108 0.0005 8 1 3.0883 -1.2109 0.0010 9 6 1.3027 -2.4327 0.0005 10 7 -0.0375 -2.5780 0.0009 11 6 -0.3364 -3.8650 0.0014 12 7 -1.5105 -4.5170 0.0014 13 7 -1.5581 -5.8015 -0.0026 14 6 -0.4531 -6.5475 0.0029 15 6 0.7682 -5.9575 0.0024 16 7 0.8346 -4.5907 0.0016 17 6 1.8672 -3.7123 0.0014 18 17 3.5593 -4.1000 0.0015 19 1 -0.4850 0.8401 -0.0004 20 1 -0.5307 -7.6247 0.0031 21 1 1.6688 -6.5536 0.0031 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261026468.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:06 Heat of formation + Delta-G solvation = 98.037496 kcal Electronic energy + Delta-G solvation = -12665.827193 eV Core-core repulsion = 10183.208889 eV Total energy + Delta-G solvation = -2482.618304 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 224.016 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.60901 -39.70162 -37.43958 -36.11801 -35.03254 -32.31869 -30.49502 -28.68990 -25.42659 -24.49493 -22.53250 -20.28922 -18.97125 -18.53324 -17.37614 -16.78398 -16.63333 -15.79052 -15.30488 -14.80775 -14.45592 -13.24384 -13.19541 -12.98324 -12.69986 -12.56173 -12.42106 -12.21790 -11.88409 -11.35705 -11.18000 -10.42605 -10.05164 -8.93115 -8.64263 -6.65612 -0.72950 0.16976 0.68973 1.38624 1.44313 1.62887 1.93603 2.00056 2.20340 2.63769 2.80519 3.30183 3.41725 3.62887 4.24027 4.36862 4.75375 4.97627 5.04587 5.18378 5.67846 6.11743 6.37846 6.63053 7.23882 7.78334 8.27361 Molecular weight = 224.02amu Principal moments of inertia in cm(-1) A = 0.035054 B = 0.010638 C = 0.008185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.579081 B = 2631.477860 C = 3420.215314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.018 3.982 3 Si 1.001 2.999 4 H -0.242 1.242 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.411 4.411 8 H 0.116 0.884 9 C 0.237 3.763 10 N -0.501 5.501 11 C 0.310 3.690 12 N -0.251 5.251 13 N -0.231 5.231 14 C -0.039 4.039 15 C 0.034 3.966 16 N -0.338 5.338 17 C -0.157 4.157 18 Cl 0.007 6.993 19 H 0.290 0.710 20 H 0.235 0.765 21 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.393 -6.038 0.006 9.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.204 4.204 3 Si 0.820 3.180 4 H -0.164 1.164 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.444 4.444 8 H 0.134 0.866 9 C 0.109 3.891 10 N -0.234 5.234 11 C -0.039 4.039 12 N -0.114 5.114 13 N -0.089 5.089 14 C -0.196 4.196 15 C -0.108 4.108 16 N -0.018 5.018 17 C -0.304 4.304 18 Cl 0.034 6.966 19 H 0.101 0.899 20 H 0.251 0.749 21 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.181 -5.230 0.003 7.362 hybrid contribution 2.134 -0.293 0.002 2.154 sum 7.315 -5.523 0.005 9.166 Atomic orbital electron populations 1.70184 1.09415 1.30802 1.27991 1.27215 0.95734 1.05404 0.92047 0.84857 0.79679 0.74561 0.78926 1.16439 1.19013 1.19025 1.19555 0.95588 0.87982 1.41253 0.86644 1.18911 0.86849 0.91298 0.92037 1.71606 1.14138 1.08154 1.29528 1.24687 0.83582 0.90552 1.05128 1.73987 1.16724 1.02810 1.17915 1.73114 1.28529 0.97765 1.09458 1.23954 0.86576 1.04310 1.04722 1.23516 1.03674 0.81066 1.02504 1.43599 1.09982 1.07655 1.40552 1.21704 0.81854 0.88775 1.38019 1.98231 1.06162 1.94147 1.98020 0.89887 0.74852 0.77154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.65 11.93 21.81 0.26 -40.39 14 2 C 0.02 0.89 5.49 85.21 0.47 1.36 14 3 Si 1.00 35.34 29.56 68.60 2.03 37.37 14 4 H -0.24 -7.87 7.11 99.48 0.71 -7.16 14 5 H -0.27 -9.11 7.11 99.48 0.71 -8.40 14 6 H -0.27 -9.12 7.11 99.48 0.71 -8.41 14 7 C -0.41 -20.70 9.23 23.35 0.22 -20.48 14 8 H 0.12 5.24 7.77 -2.91 -0.02 5.21 14 9 C 0.24 12.74 6.67 39.78 0.27 13.00 14 10 N -0.50 -29.29 9.50 -191.50 -1.82 -31.11 14 11 C 0.31 16.40 8.98 261.15 2.35 18.75 14 12 N -0.25 -12.60 11.68 -59.36 -0.69 -13.30 14 13 N -0.23 -9.45 11.59 -58.34 -0.68 -10.13 14 14 C -0.04 -1.18 11.21 83.86 0.94 -0.24 14 15 C 0.03 1.12 11.10 83.31 0.93 2.04 14 16 N -0.34 -15.05 2.94 -343.83 -1.01 -16.06 14 17 C -0.16 -7.23 7.74 84.51 0.65 -6.58 14 18 Cl 0.01 0.24 29.07 -2.72 -0.08 0.16 14 19 H 0.29 13.89 8.30 -92.71 -0.77 13.12 14 20 H 0.24 4.12 8.06 -2.91 -0.02 4.09 14 21 H 0.21 4.70 8.06 -2.91 -0.02 4.67 14 Total: -1.00 -67.58 220.20 5.10 -62.48 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: 1.28 Total: 3.12 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 5.81 Total: 7.86 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -3.94 Total: -110.99 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.08 Total: 0.16 kcal Total: -67.58 5.10 -62.48 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026468.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.514 kcal (2) G-P(sol) polarization free energy of solvation -67.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds