Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47563 * 2 1 4 4 C 1.50698 * 109.47220 * 239.99388 * 2 1 3 5 5 H 1.08002 * 119.99879 * 243.27746 * 4 2 1 6 6 C 1.37870 * 119.99945 * 63.27960 * 4 2 1 7 7 N 1.31520 * 120.00007 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00187 * 179.97438 * 6 4 2 9 9 H 1.48511 * 109.46667 * 90.00245 * 8 6 4 10 10 H 1.48498 * 109.47032 * 209.99927 * 8 6 4 11 11 H 1.48493 * 109.47008 * 330.00506 * 8 6 4 12 12 N 1.46907 * 109.46484 * 119.99827 * 2 1 3 13 13 C 1.46899 * 111.00085 * 77.19103 * 12 2 1 14 14 C 1.53000 * 117.49680 * 347.57195 * 13 12 2 15 15 C 1.53004 * 117.49349 * 278.91372 * 13 12 2 16 16 C 1.46903 * 110.99673 * 201.13786 * 12 2 1 17 17 C 1.54887 * 110.60117 * 317.37637 * 16 12 2 18 18 C 1.54891 * 102.74835 * 156.67546 * 17 16 12 19 19 C 1.54269 * 104.19599 * 322.05615 * 18 17 16 20 20 C 1.53875 * 106.59876 * 23.61152 * 19 18 17 21 21 H 1.08995 * 109.47590 * 200.84583 * 1 2 3 22 22 H 1.09007 * 109.46930 * 320.85171 * 1 2 3 23 23 H 1.09008 * 109.46653 * 80.84504 * 1 2 3 24 24 H 0.96997 * 119.99960 * 179.97438 * 7 6 4 25 25 H 1.08997 * 115.55482 * 133.24542 * 13 12 2 26 26 H 1.09003 * 117.50244 * 0.02562 * 14 13 12 27 27 H 1.09001 * 117.49674 * 145.02660 * 14 13 12 28 28 H 1.08998 * 117.49926 * 214.97932 * 15 13 12 29 29 H 1.08994 * 117.49909 * 0.02562 * 15 13 12 30 30 H 1.09000 * 110.43530 * 194.75252 * 16 12 2 31 31 H 1.09000 * 110.75196 * 274.99048 * 17 16 12 32 32 H 1.08993 * 110.75695 * 38.36090 * 17 16 12 33 33 H 1.08998 * 110.48410 * 203.37387 * 18 17 16 34 34 H 1.09002 * 110.48615 * 80.73398 * 18 17 16 35 35 H 1.09001 * 110.02617 * 264.32716 * 19 18 17 36 36 H 1.08999 * 110.07156 * 142.91853 * 19 18 17 37 37 H 1.08999 * 110.03221 * 240.72008 * 20 19 18 38 38 H 1.08995 * 110.03150 * 119.28373 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6089 -1.6185 -1.1320 6 6 1.7560 -0.2015 -2.4815 7 7 1.0535 0.9039 -2.6012 8 14 2.3792 -1.0818 -4.0067 9 1 1.3655 -2.0692 -4.4572 10 1 2.6195 -0.0912 -5.0865 11 1 3.6479 -1.7849 -3.6886 12 7 2.0195 -0.6925 1.1996 13 6 1.9083 -2.1495 1.0486 14 6 1.0747 -2.6769 -0.1210 15 6 0.5409 -2.7843 1.3097 16 6 3.4010 -0.2992 1.5075 17 6 4.2516 -0.2391 0.2145 18 6 5.3986 0.7260 0.6045 19 6 4.7127 1.7943 1.4809 20 6 3.4426 1.1425 2.0551 21 1 -0.3634 -0.9603 0.3657 22 1 -0.3633 0.7970 0.6488 23 1 -0.3633 0.1635 -1.0147 24 1 0.8594 1.2622 -3.4814 25 1 2.7913 -2.7207 1.3351 26 1 0.6091 -1.9428 -0.7787 27 1 1.4091 -3.5952 -0.6036 28 1 0.5243 -3.7733 1.7677 29 1 -0.2762 -2.1209 1.5931 30 1 3.8434 -0.9920 2.2233 31 1 4.6442 -1.2247 -0.0357 32 1 3.6693 0.1673 -0.6124 33 1 5.8317 1.1830 -0.2853 34 1 6.1636 0.1987 1.1745 35 1 4.4467 2.6600 0.8744 36 1 5.3765 2.0960 2.2911 37 1 2.5601 1.6919 1.7273 38 1 3.4904 1.1271 3.1439 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261037825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = 46.105146 kcal Electronic energy + Delta-G solvation = -16916.394461 eV Core-core repulsion = 14567.280575 eV Total energy + Delta-G solvation = -2349.113886 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.22593 -36.38952 -33.25777 -31.69669 -29.17500 -28.03647 -25.69332 -25.22833 -21.39724 -21.25057 -20.09110 -19.43079 -18.21141 -16.66831 -15.74293 -14.90469 -14.65740 -13.80153 -13.50177 -12.88267 -12.66492 -12.48956 -12.15272 -11.60805 -11.27930 -11.00961 -10.89738 -10.70649 -10.55438 -10.43297 -10.30864 -10.22940 -10.12277 -9.81282 -9.69442 -9.59928 -9.30572 -8.99698 -8.71258 -8.29413 -6.94050 -6.00487 -3.98185 3.26277 3.34670 3.37352 4.39108 4.73483 5.07831 5.26600 5.37841 5.40410 5.63185 5.87388 5.98963 6.07869 6.14980 6.24565 6.26106 6.31615 6.37503 6.43547 6.48094 6.55397 6.62257 6.72456 6.89615 6.92961 6.98652 7.00835 7.18543 7.26235 7.49134 7.59234 7.65651 7.79682 7.99297 8.18119 8.36929 8.57394 8.99519 9.52247 11.00345 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.014167 C = 0.010851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.350358 B = 1975.899835 C = 2579.747572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.201 3.799 3 H 0.044 0.956 4 C -0.516 4.516 5 H 0.070 0.930 6 C 0.058 3.942 7 N -0.885 5.885 8 Si 0.880 3.120 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.505 5.505 13 C 0.033 3.967 14 C -0.184 4.184 15 C -0.205 4.205 16 C 0.092 3.908 17 C -0.167 4.167 18 C -0.125 4.125 19 C -0.120 4.120 20 C -0.112 4.112 21 H 0.043 0.957 22 H 0.012 0.988 23 H 0.076 0.924 24 H 0.261 0.739 25 H 0.082 0.918 26 H 0.154 0.846 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.134 0.866 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 -1.902 5.494 6.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.095 3.905 3 H 0.062 0.938 4 C -0.555 4.555 5 H 0.088 0.912 6 C -0.144 4.144 7 N -0.523 5.523 8 Si 0.708 3.292 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.226 5.226 13 C -0.077 4.077 14 C -0.221 4.221 15 C -0.243 4.243 16 C -0.017 4.017 17 C -0.205 4.205 18 C -0.163 4.163 19 C -0.158 4.158 20 C -0.150 4.150 21 H 0.062 0.938 22 H 0.031 0.969 23 H 0.095 0.905 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.171 0.829 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.151 0.849 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.281 -1.605 5.768 6.827 hybrid contribution 0.960 -0.779 -1.499 1.943 sum 4.241 -2.384 4.269 6.472 Atomic orbital electron populations 1.22115 0.98153 0.98230 1.01554 1.19418 0.91985 0.94517 0.84611 0.93840 1.21853 1.32538 1.10013 0.91125 0.91240 1.24886 0.95732 0.95102 0.98640 1.69934 1.38704 1.20199 1.23500 0.86759 0.79401 0.79575 0.83423 1.20690 1.21377 1.19960 1.62318 1.18240 1.03382 1.38637 1.22105 0.92771 0.89421 1.03392 1.24202 1.04252 1.02409 0.91245 1.23369 0.98679 1.00138 1.02082 1.22348 0.88702 0.95136 0.95552 1.23839 0.96530 0.98376 1.01802 1.22325 0.98089 0.97414 0.98489 1.22069 0.96756 0.98455 0.98472 1.22108 0.97887 0.96292 0.98756 0.93835 0.96923 0.90542 0.92940 0.89972 0.82877 0.91578 0.91130 0.89061 0.92243 0.93560 0.84851 0.92685 0.93356 0.92258 0.93116 0.90986 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.41 37.16 0.31 -3.03 16 2 C 0.20 4.71 1.52 -68.86 -0.10 4.60 16 3 H 0.04 1.14 6.17 -51.93 -0.32 0.82 16 4 C -0.52 -12.59 2.24 -34.44 -0.08 -12.67 16 5 H 0.07 1.72 5.09 -52.49 -0.27 1.45 16 6 C 0.06 1.49 5.16 -17.82 -0.09 1.40 16 7 N -0.88 -23.85 11.67 55.43 0.65 -23.21 16 8 Si 0.88 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.50 -10.60 4.54 -210.25 -0.96 -11.55 16 13 C 0.03 0.66 5.04 -67.71 -0.34 0.32 16 14 C -0.18 -3.75 7.02 -26.69 -0.19 -3.93 16 15 C -0.20 -3.79 9.74 -26.69 -0.26 -4.05 16 16 C 0.09 1.76 2.79 -66.05 -0.18 1.58 16 17 C -0.17 -3.32 4.80 -24.74 -0.12 -3.43 16 18 C -0.12 -2.11 6.83 -25.07 -0.17 -2.28 16 19 C -0.12 -1.93 6.80 -25.61 -0.17 -2.11 16 20 C -0.11 -1.99 6.18 -25.61 -0.16 -2.15 16 21 H 0.04 0.95 3.69 -51.93 -0.19 0.76 16 22 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 23 H 0.08 1.96 6.13 -51.92 -0.32 1.64 16 24 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.08 1.57 7.73 -51.93 -0.40 1.17 16 26 H 0.15 3.55 3.63 -51.93 -0.19 3.36 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.09 1.75 6.48 -51.93 -0.34 1.41 16 30 H 0.06 1.09 7.81 -51.93 -0.41 0.68 16 31 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 32 H 0.13 3.12 4.28 -51.93 -0.22 2.90 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.41 6.72 -51.93 -0.35 1.06 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 272.90 15.07 4.11 4.11 Total: -1.00 -25.03 272.90 -8.71 -33.75 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.94 Total: 7.31 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -1.56 Total: -25.74 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.31 Total: -34.76 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.03 -8.71 -33.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261037825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.852 kcal (2) G-P(sol) polarization free energy of solvation -25.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds