Wall clock time and date at job start Mon Mar 30 2020 02:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48525 * 111.00242 * 2 1 4 4 C 1.54939 * 103.22602 * 200.28006 * 3 2 1 5 5 C 1.54595 * 102.92425 * 37.41412 * 4 3 2 6 6 C 1.50708 * 110.30766 * 96.95623 * 5 4 3 7 7 H 1.07997 * 119.99875 * 29.11647 * 6 5 4 8 8 C 1.37875 * 119.99821 * 209.11923 * 6 5 4 9 9 N 1.31516 * 119.99665 * 184.30007 * 8 6 5 10 10 Si 1.86799 * 120.00083 * 4.30243 * 8 6 5 11 11 H 1.48494 * 109.47305 * 88.85721 * 10 8 6 12 12 H 1.48502 * 109.47163 * 328.85190 * 10 8 6 13 13 H 1.48502 * 109.46784 * 208.85560 * 10 8 6 14 14 C 1.52994 * 110.39578 * 219.08393 * 5 4 3 15 15 C 1.54897 * 110.75590 * 297.86303 * 14 5 4 16 16 C 1.54265 * 104.19729 * 203.74262 * 15 14 5 17 17 C 1.53878 * 106.59847 * 23.61051 * 16 15 14 18 18 C 1.54272 * 106.59543 * 0.02562 * 17 16 15 19 19 C 1.47908 * 110.99910 * 242.60072 * 2 1 3 20 20 H 1.09003 * 109.47033 * 182.13136 * 1 2 3 21 21 H 1.09003 * 109.46426 * 302.12917 * 1 2 3 22 22 H 1.09001 * 109.47179 * 62.12845 * 1 2 3 23 23 H 1.08999 * 110.66900 * 318.71142 * 3 2 1 24 24 H 1.09005 * 110.66696 * 81.84827 * 3 2 1 25 25 H 1.09002 * 110.72814 * 279.05223 * 4 3 2 26 26 H 1.09001 * 110.72405 * 155.77326 * 4 3 2 27 27 H 0.97000 * 119.99856 * 179.97438 * 9 8 6 28 28 H 1.08998 * 110.67467 * 61.29808 * 14 5 4 29 29 H 1.08995 * 110.48610 * 322.42297 * 15 14 5 30 30 H 1.09001 * 110.48382 * 85.06543 * 15 14 5 31 31 H 1.09002 * 110.03194 * 264.32700 * 16 15 14 32 32 H 1.08996 * 110.03166 * 142.89576 * 16 15 14 33 33 H 1.09000 * 110.03320 * 240.72022 * 17 16 15 34 34 H 1.08998 * 110.07316 * 119.30694 * 17 16 15 35 35 H 1.09001 * 110.48478 * 217.71182 * 18 17 16 36 36 H 1.08997 * 110.48358 * 95.06954 * 18 17 16 37 37 H 1.09002 * 109.91102 * 26.49643 * 19 2 1 38 38 H 1.08995 * 110.08488 * 265.29681 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2104 -0.5228 5 6 3.2983 0.1052 -1.5931 6 6 3.1812 0.7180 -2.9650 7 1 3.6533 1.6664 -3.1747 8 6 2.4714 0.0679 -3.9521 9 7 2.4397 0.5596 -5.1715 10 14 1.5549 -1.5113 -3.5576 11 1 0.1815 -1.1847 -3.0971 12 1 2.2743 -2.2469 -2.4868 13 1 1.4805 -2.3578 -4.7755 14 6 4.4892 -0.8539 -1.5407 15 6 5.8092 -0.1078 -1.8572 16 6 6.7572 -1.2143 -2.3638 17 6 5.8639 -2.3522 -2.8884 18 6 4.4043 -1.8970 -2.6829 19 6 1.9990 -0.6354 -1.2259 20 1 -0.3633 -1.0270 0.0382 21 1 -0.3632 0.5466 0.8703 22 1 -0.3633 0.4804 -0.9085 23 1 1.4238 2.0204 -0.6729 24 1 2.0042 1.7976 1.0096 25 1 4.1116 0.8834 0.2787 26 1 3.8124 2.1350 -0.9716 27 1 1.9406 0.1020 -5.8661 28 1 4.5439 -1.3468 -0.5701 29 1 5.6478 0.6408 -2.6327 30 1 6.2109 0.3556 -0.9560 31 1 7.3802 -1.5757 -1.5456 32 1 7.3834 -0.8298 -3.1688 33 1 6.0534 -3.2657 -2.3248 34 1 6.0564 -2.5207 -3.9480 35 1 3.7805 -2.7394 -2.3839 36 1 4.0164 -1.4376 -3.5920 37 1 1.2758 -0.5402 -2.0359 38 1 2.2115 -1.6882 -1.0400 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261123167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:40 Heat of formation + Delta-G solvation = 28.601785 kcal Electronic energy + Delta-G solvation = -16994.823343 eV Core-core repulsion = 14644.950454 eV Total energy + Delta-G solvation = -2349.872889 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.27139 -36.60837 -33.02476 -31.44420 -29.35798 -27.87760 -26.68108 -25.38275 -23.65055 -21.24694 -20.34746 -19.24848 -18.38057 -16.34335 -15.55278 -15.21365 -15.02264 -14.11799 -13.55494 -13.40600 -12.98854 -12.68612 -12.43176 -12.33351 -11.87261 -11.45232 -11.05866 -11.00350 -10.69457 -10.58998 -10.37699 -10.24704 -10.00196 -9.87556 -9.68446 -9.44192 -9.11634 -8.88591 -8.62681 -8.43956 -7.72379 -6.08915 -4.08815 3.24536 3.31355 3.41789 4.34364 4.75131 5.14002 5.33373 5.48960 5.52572 5.59353 5.69951 5.83471 5.97934 6.04222 6.07455 6.22739 6.25169 6.29016 6.33216 6.35220 6.42510 6.51821 6.57055 6.61672 6.69079 6.74563 6.81413 6.98267 6.98800 7.17655 7.22395 7.25232 7.41857 7.54408 7.65805 7.86723 8.51106 8.92029 9.50923 11.01341 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.015558 C = 0.012123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.439962 B = 1799.253532 C = 2309.156101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.523 5.523 3 C 0.039 3.961 4 C -0.103 4.103 5 C 0.046 3.954 6 C -0.496 4.496 7 H 0.076 0.924 8 C 0.066 3.934 9 N -0.899 5.899 10 Si 0.867 3.133 11 H -0.302 1.302 12 H -0.222 1.222 13 H -0.309 1.309 14 C -0.067 4.067 15 C -0.108 4.108 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.134 4.134 19 C 0.019 3.981 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.026 0.974 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.263 0.737 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -2.923 7.793 8.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.247 5.247 3 C -0.089 4.089 4 C -0.141 4.141 5 C 0.044 3.956 6 C -0.534 4.534 7 H 0.094 0.906 8 C -0.134 4.134 9 N -0.537 5.537 10 Si 0.702 3.298 11 H -0.232 1.232 12 H -0.147 1.147 13 H -0.239 1.239 14 C -0.086 4.086 15 C -0.146 4.146 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.171 4.171 19 C -0.108 4.108 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.045 0.955 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.285 -3.228 8.067 8.984 hybrid contribution -1.099 -0.381 -0.794 1.408 sum 1.187 -3.609 7.273 8.206 Atomic orbital electron populations 1.22462 0.89578 1.01251 1.00115 1.64800 1.06793 1.15408 1.37698 1.23132 0.96827 0.89777 0.99159 1.22482 0.94342 0.99744 0.97529 1.19305 0.89574 0.91400 0.95295 1.20868 1.32993 1.07200 0.92312 0.90563 1.25187 0.96260 0.97032 0.94964 1.69891 1.42141 1.40038 1.01599 0.87870 0.79522 0.84897 0.77519 1.23202 1.14740 1.23884 1.22135 0.95439 0.95354 0.95706 1.22298 0.94297 0.97740 1.00250 1.22097 0.97808 0.96648 0.99300 1.22124 0.96618 0.97369 0.99846 1.22998 0.94700 0.97983 1.01425 1.24061 0.98288 0.98892 0.89511 0.92235 0.92042 0.95518 0.93752 0.91712 0.92897 0.91573 0.92743 0.93291 0.89960 0.93560 0.93296 0.92827 0.93321 0.92843 0.92698 0.88910 0.93790 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.43 60.07 0.57 0.83 16 2 N -0.52 -10.40 5.55 -238.71 -1.33 -11.73 16 3 C 0.04 0.73 6.56 -1.90 -0.01 0.72 16 4 C -0.10 -2.03 5.62 -24.87 -0.14 -2.17 16 5 C 0.05 1.01 0.37 -154.30 -0.06 0.95 16 6 C -0.50 -13.00 6.89 -34.44 -0.24 -13.23 16 7 H 0.08 2.20 7.83 -52.49 -0.41 1.78 16 8 C 0.07 1.83 4.35 -17.82 -0.08 1.75 16 9 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 10 Si 0.87 21.29 20.94 -169.99 -3.56 17.73 16 11 H -0.30 -7.59 6.81 56.52 0.38 -7.20 16 12 H -0.22 -4.92 2.28 56.52 0.13 -4.79 16 13 H -0.31 -7.84 7.11 56.52 0.40 -7.44 16 14 C -0.07 -1.37 1.91 -88.61 -0.17 -1.53 16 15 C -0.11 -2.04 5.66 -25.07 -0.14 -2.19 16 16 C -0.12 -2.04 6.80 -25.61 -0.17 -2.21 16 17 C -0.12 -2.16 6.80 -25.61 -0.17 -2.33 16 18 C -0.13 -2.78 3.96 -25.06 -0.10 -2.88 16 19 C 0.02 0.41 3.53 -2.75 -0.01 0.40 16 20 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.03 0.50 7.96 -51.93 -0.41 0.09 16 23 H 0.04 0.88 8.02 -51.93 -0.42 0.47 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.96 7.87 -51.93 -0.41 0.55 16 26 H 0.07 1.31 7.72 -51.93 -0.40 0.91 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.75 6.90 -51.93 -0.36 1.40 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 1.11 6.12 -51.93 -0.32 0.79 16 36 H 0.09 2.22 3.96 -51.93 -0.21 2.01 16 37 H 0.04 1.08 2.22 -51.93 -0.12 0.97 16 38 H 0.07 1.61 5.78 -51.93 -0.30 1.31 16 LS Contribution 264.51 15.07 3.99 3.99 Total: -1.00 -28.32 264.51 -7.43 -35.75 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.58 Total: 2.20 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -0.73 Total: -21.89 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.55 Total: -37.77 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -3.56 Total: 17.73 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.32 -7.43 -35.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.355 kcal (2) G-P(sol) polarization free energy of solvation -28.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds