Wall clock time and date at job start Mon Mar 30 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48826 * 110.97048 * 2 1 4 4 C 1.54383 * 104.46349 * 200.94695 * 3 2 1 5 5 C 1.54259 * 105.15038 * 23.88079 * 4 3 2 6 6 C 1.50696 * 110.31969 * 241.04814 * 5 4 3 7 7 H 1.08007 * 119.99424 * 144.00257 * 6 5 4 8 8 C 1.37874 * 120.00514 * 324.00218 * 6 5 4 9 9 N 1.31514 * 119.99913 * 185.25155 * 8 6 5 10 10 Si 1.86798 * 119.99658 * 5.24825 * 8 6 5 11 11 H 1.48502 * 109.47154 * 87.21365 * 10 8 6 12 12 H 1.48503 * 109.46933 * 207.20922 * 10 8 6 13 13 H 1.48495 * 109.47430 * 327.21229 * 10 8 6 14 14 C 1.52996 * 110.32288 * 118.94482 * 5 4 3 15 15 C 1.54890 * 110.75623 * 180.42615 * 14 5 4 16 16 C 1.54464 * 104.10391 * 203.89379 * 15 14 5 17 17 C 1.53879 * 106.68315 * 23.34026 * 16 15 14 18 18 C 1.54265 * 106.59919 * 0.16185 * 17 16 15 19 19 C 1.48560 * 111.00008 * 244.57870 * 2 1 3 20 20 H 1.09007 * 109.47349 * 175.42124 * 1 2 3 21 21 H 1.09005 * 109.47170 * 295.41632 * 1 2 3 22 22 H 1.08996 * 109.47155 * 55.41967 * 1 2 3 23 23 H 1.09001 * 110.49179 * 82.20539 * 3 2 1 24 24 H 1.08998 * 110.45196 * 319.67271 * 3 2 1 25 25 H 1.08994 * 110.32772 * 264.92886 * 4 3 2 26 26 H 1.09008 * 110.31794 * 142.82358 * 4 3 2 27 27 H 0.97004 * 119.99464 * 179.97438 * 9 8 6 28 28 H 1.09003 * 110.67621 * 303.66170 * 14 5 4 29 29 H 1.08998 * 110.48638 * 322.42692 * 15 14 5 30 30 H 1.09003 * 110.48705 * 85.06492 * 15 14 5 31 31 H 1.08999 * 109.85705 * 264.10324 * 16 15 14 32 32 H 1.09002 * 110.12569 * 142.72659 * 16 15 14 33 33 H 1.08999 * 110.02882 * 240.87359 * 17 16 15 34 34 H 1.09007 * 110.02845 * 119.44535 * 17 16 15 35 35 H 1.08992 * 110.48531 * 217.71153 * 18 17 16 36 36 H 1.08992 * 110.48654 * 95.06540 * 18 17 16 37 37 H 1.09006 * 110.40922 * 40.26467 * 19 2 1 38 38 H 1.08998 * 110.41541 * 277.81833 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3897 0.0000 4 6 3.4432 1.2501 -0.5344 5 6 3.4432 -0.0539 -1.3585 6 6 4.4180 -1.0429 -0.7732 7 1 4.1879 -2.0981 -0.7828 8 6 5.6035 -0.6008 -0.2254 9 7 6.4993 -1.4687 0.1915 10 14 5.9371 1.2310 -0.0754 11 1 5.3774 1.7329 1.2053 12 1 7.4024 1.4711 -0.1030 13 1 5.2970 1.9453 -1.2090 14 6 3.7971 0.2396 -2.8177 15 6 3.7896 -1.0622 -3.6570 16 6 4.7167 -0.7455 -4.8512 17 6 5.6510 0.3894 -4.3963 18 6 5.2639 0.7221 -2.9405 19 6 2.0014 -0.5954 -1.2526 20 1 -0.3634 -1.0244 -0.0820 21 1 -0.3634 0.4411 0.9282 22 1 -0.3633 0.5832 -0.8461 23 1 2.0089 1.7956 1.0116 24 1 1.4109 2.0240 -0.6609 25 1 4.1483 1.1748 0.2933 26 1 3.6953 2.0993 -1.1696 27 1 7.3335 -1.1576 0.5765 28 1 3.1120 0.9751 -3.2395 29 1 4.1889 -1.8932 -3.0757 30 1 2.7806 -1.2874 -4.0027 31 1 4.1226 -0.4204 -5.7052 32 1 5.3012 -1.6266 -5.1162 33 1 5.5102 1.2653 -5.0296 34 1 6.6888 0.0591 -4.4405 35 1 5.3282 1.7958 -2.7645 36 1 5.9030 0.1812 -2.2427 37 1 1.4098 -0.2713 -2.1089 38 1 2.0079 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261123169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:42 Heat of formation + Delta-G solvation = 31.895457 kcal Electronic energy + Delta-G solvation = -16919.230161 eV Core-core repulsion = 14569.500096 eV Total energy + Delta-G solvation = -2349.730064 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24415 -36.61331 -33.19391 -31.31270 -29.23731 -27.98814 -26.59088 -25.54192 -23.59259 -21.22720 -20.40287 -19.28708 -18.39185 -16.24866 -15.51935 -15.17772 -15.06653 -14.17828 -13.66046 -13.45418 -12.92817 -12.59777 -12.52781 -12.26000 -11.91454 -11.53977 -11.37468 -10.92052 -10.82666 -10.67122 -10.44419 -10.00624 -9.98044 -9.87823 -9.68356 -9.48114 -9.10430 -8.67187 -8.55743 -8.31747 -7.80876 -5.97951 -3.95729 3.32778 3.39033 3.49691 4.44426 4.70077 5.23679 5.30377 5.46882 5.50453 5.55255 5.56457 5.74087 5.84396 5.95399 6.06502 6.14937 6.23146 6.24872 6.28743 6.32398 6.38920 6.41792 6.55111 6.56169 6.62431 6.66322 6.71549 6.92169 6.97458 7.07595 7.19144 7.24752 7.36020 7.64943 7.74847 7.89374 8.60515 9.02888 9.62655 11.13181 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.015628 C = 0.011527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.560182 B = 1791.266703 C = 2428.535114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.507 5.507 3 C 0.038 3.962 4 C -0.145 4.145 5 C 0.052 3.948 6 C -0.481 4.481 7 H 0.075 0.925 8 C 0.065 3.935 9 N -0.902 5.902 10 Si 0.872 3.128 11 H -0.299 1.299 12 H -0.314 1.314 13 H -0.226 1.226 14 C -0.071 4.071 15 C -0.110 4.110 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.131 4.131 19 C 0.055 3.945 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.018 0.982 23 H 0.067 0.933 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.261 0.739 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.021 0.979 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.945 5.211 -6.087 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.230 5.230 3 C -0.090 4.090 4 C -0.182 4.182 5 C 0.051 3.949 6 C -0.519 4.519 7 H 0.093 0.907 8 C -0.134 4.134 9 N -0.540 5.540 10 Si 0.707 3.293 11 H -0.230 1.230 12 H -0.244 1.244 13 H -0.151 1.151 14 C -0.090 4.090 15 C -0.147 4.147 16 C -0.158 4.158 17 C -0.160 4.160 18 C -0.167 4.167 19 C -0.072 4.072 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.036 0.964 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.039 0.961 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.623 4.853 -5.552 9.912 hybrid contribution -0.058 1.410 -0.369 1.458 sum -6.681 6.263 -5.922 10.905 Atomic orbital electron populations 1.22482 0.89868 1.01192 0.99853 1.65385 1.06069 1.14814 1.36779 1.23093 0.96068 0.90036 0.99766 1.23270 0.95536 0.99556 0.99836 1.19194 0.92638 0.92140 0.90925 1.20699 1.00429 0.93740 1.37012 0.90701 1.25151 0.95917 0.97427 0.94954 1.69896 1.08114 1.33865 1.42140 0.87872 0.74549 0.87710 0.79121 1.22981 1.24424 1.15086 1.22192 0.95078 0.95214 0.96538 1.22361 0.97283 0.99755 0.95351 1.22129 0.97698 0.98016 0.97992 1.22135 0.98955 0.97454 0.97470 1.22991 0.98325 0.99611 0.95796 1.23196 0.95979 0.99985 0.88064 0.91825 0.92150 0.96368 0.91408 0.94976 0.91096 0.91844 0.92880 0.93937 0.89575 0.93700 0.93417 0.92710 0.93372 0.92731 0.92578 0.88865 0.96124 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.53 60.06 0.57 0.81 16 2 N -0.51 -10.00 5.66 -237.99 -1.35 -11.35 16 3 C 0.04 0.73 6.51 -2.03 -0.01 0.72 16 4 C -0.15 -3.14 3.75 -25.35 -0.10 -3.23 16 5 C 0.05 1.16 0.43 -154.28 -0.07 1.09 16 6 C -0.48 -12.80 6.88 -34.44 -0.24 -13.04 16 7 H 0.07 2.20 7.82 -52.48 -0.41 1.79 16 8 C 0.07 1.83 4.40 -17.82 -0.08 1.75 16 9 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 10 Si 0.87 21.41 20.94 -169.99 -3.56 17.85 16 11 H -0.30 -7.53 6.76 56.52 0.38 -7.15 16 12 H -0.31 -8.00 7.11 56.52 0.40 -7.60 16 13 H -0.23 -4.91 2.27 56.52 0.13 -4.78 16 14 C -0.07 -1.42 1.91 -88.63 -0.17 -1.59 16 15 C -0.11 -2.07 5.73 -24.97 -0.14 -2.21 16 16 C -0.12 -2.02 6.81 -25.51 -0.17 -2.19 16 17 C -0.12 -2.14 6.80 -25.61 -0.17 -2.32 16 18 C -0.13 -2.67 3.95 -25.07 -0.10 -2.77 16 19 C 0.06 1.12 5.11 -2.18 -0.01 1.11 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.02 0.26 7.98 -51.93 -0.41 -0.16 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.03 0.54 7.91 -51.93 -0.41 0.13 16 25 H 0.07 1.72 2.66 -51.93 -0.14 1.58 16 26 H 0.06 1.28 5.93 -51.92 -0.31 0.97 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.85 6.83 -51.93 -0.35 1.49 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 35 H 0.06 1.11 6.15 -51.93 -0.32 0.79 16 36 H 0.09 2.21 3.81 -51.93 -0.20 2.01 16 37 H 0.02 0.38 7.69 -51.93 -0.40 -0.02 16 38 H 0.08 1.61 7.72 -51.93 -0.40 1.21 16 LS Contribution 264.61 15.07 3.99 3.99 Total: -1.00 -28.94 264.61 -7.42 -36.36 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.59 Total: 1.54 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -0.69 Total: -21.88 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.57 Total: -37.85 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -3.56 Total: 17.85 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.94 -7.42 -36.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.255 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds