Wall clock time and date at job start Mon Mar 30 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48826 * 110.97048 * 2 1 4 4 C 1.54383 * 104.46349 * 200.94695 * 3 2 1 5 5 C 1.54259 * 105.15038 * 23.88079 * 4 3 2 6 6 C 1.50696 * 110.31969 * 241.04814 * 5 4 3 7 7 H 1.08007 * 119.99424 * 144.00257 * 6 5 4 8 8 C 1.37874 * 120.00514 * 324.00218 * 6 5 4 9 9 N 1.31514 * 119.99913 * 185.25155 * 8 6 5 10 10 Si 1.86798 * 119.99658 * 5.24825 * 8 6 5 11 11 H 1.48502 * 109.47154 * 87.21365 * 10 8 6 12 12 H 1.48503 * 109.46933 * 207.20922 * 10 8 6 13 13 H 1.48495 * 109.47430 * 327.21229 * 10 8 6 14 14 C 1.52996 * 110.32288 * 118.94482 * 5 4 3 15 15 C 1.54890 * 110.75623 * 180.42615 * 14 5 4 16 16 C 1.54464 * 104.10391 * 203.89379 * 15 14 5 17 17 C 1.53879 * 106.68315 * 23.34026 * 16 15 14 18 18 C 1.54265 * 106.59919 * 0.16185 * 17 16 15 19 19 C 1.48560 * 111.00008 * 244.57870 * 2 1 3 20 20 H 1.09007 * 109.47349 * 175.42124 * 1 2 3 21 21 H 1.09005 * 109.47170 * 295.41632 * 1 2 3 22 22 H 1.08996 * 109.47155 * 55.41967 * 1 2 3 23 23 H 1.09001 * 110.49179 * 82.20539 * 3 2 1 24 24 H 1.08998 * 110.45196 * 319.67271 * 3 2 1 25 25 H 1.08994 * 110.32772 * 264.92886 * 4 3 2 26 26 H 1.09008 * 110.31794 * 142.82358 * 4 3 2 27 27 H 0.97004 * 119.99464 * 179.97438 * 9 8 6 28 28 H 1.09003 * 110.67621 * 303.66170 * 14 5 4 29 29 H 1.08998 * 110.48638 * 322.42692 * 15 14 5 30 30 H 1.09003 * 110.48705 * 85.06492 * 15 14 5 31 31 H 1.08999 * 109.85705 * 264.10324 * 16 15 14 32 32 H 1.09002 * 110.12569 * 142.72659 * 16 15 14 33 33 H 1.08999 * 110.02882 * 240.87359 * 17 16 15 34 34 H 1.09007 * 110.02845 * 119.44535 * 17 16 15 35 35 H 1.08992 * 110.48531 * 217.71153 * 18 17 16 36 36 H 1.08992 * 110.48654 * 95.06540 * 18 17 16 37 37 H 1.09006 * 110.40922 * 40.26467 * 19 2 1 38 38 H 1.08998 * 110.41541 * 277.81833 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0016 1.3897 0.0000 4 6 3.4432 1.2501 -0.5344 5 6 3.4432 -0.0539 -1.3585 6 6 4.4180 -1.0429 -0.7732 7 1 4.1879 -2.0981 -0.7828 8 6 5.6035 -0.6008 -0.2254 9 7 6.4993 -1.4687 0.1915 10 14 5.9371 1.2310 -0.0754 11 1 5.3774 1.7329 1.2053 12 1 7.4024 1.4711 -0.1030 13 1 5.2970 1.9453 -1.2090 14 6 3.7971 0.2396 -2.8177 15 6 3.7896 -1.0622 -3.6570 16 6 4.7167 -0.7455 -4.8512 17 6 5.6510 0.3894 -4.3963 18 6 5.2639 0.7221 -2.9405 19 6 2.0014 -0.5954 -1.2526 20 1 -0.3634 -1.0244 -0.0820 21 1 -0.3634 0.4411 0.9282 22 1 -0.3633 0.5832 -0.8461 23 1 2.0089 1.7956 1.0116 24 1 1.4109 2.0240 -0.6609 25 1 4.1483 1.1748 0.2933 26 1 3.6953 2.0993 -1.1696 27 1 7.3335 -1.1576 0.5765 28 1 3.1120 0.9751 -3.2395 29 1 4.1889 -1.8932 -3.0757 30 1 2.7806 -1.2874 -4.0027 31 1 4.1226 -0.4204 -5.7052 32 1 5.3012 -1.6266 -5.1162 33 1 5.5102 1.2653 -5.0296 34 1 6.6888 0.0591 -4.4405 35 1 5.3282 1.7958 -2.7645 36 1 5.9030 0.1812 -2.2427 37 1 1.4098 -0.2713 -2.1089 38 1 2.0079 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261123169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:41 Heat of formation + Delta-G solvation = 11.180933 kcal Electronic energy + Delta-G solvation = -16920.128410 eV Core-core repulsion = 14569.500096 eV Total energy + Delta-G solvation = -2350.628313 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.85540 -38.07179 -34.99798 -33.16816 -30.79616 -29.47321 -28.06673 -27.33336 -25.25527 -22.78920 -21.94853 -20.71675 -20.19374 -18.15069 -17.23503 -16.79001 -16.51776 -15.80601 -15.20208 -15.00410 -14.69966 -14.16223 -14.06138 -13.87124 -13.43279 -13.11871 -12.90694 -12.61885 -12.26171 -12.19988 -11.91404 -11.88425 -11.64093 -11.51873 -11.23135 -11.03321 -10.83711 -10.52429 -10.45956 -10.22443 -9.21889 -8.15927 -6.15807 1.36092 1.38262 1.50842 2.40153 3.16100 3.31660 3.78470 3.97432 4.02205 4.10502 4.13232 4.32925 4.53040 4.55488 4.63844 4.75009 4.75960 4.80677 4.84346 4.91050 4.94632 5.00088 5.00531 5.03303 5.10447 5.21574 5.24922 5.31631 5.41601 5.49077 5.58365 5.69559 5.72917 5.97518 6.14864 6.31480 6.45849 6.86740 7.46641 8.98911 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.015628 C = 0.011527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.560182 B = 1791.266703 C = 2428.535114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.541 5.541 3 C 0.043 3.957 4 C -0.152 4.152 5 C 0.045 3.955 6 C -0.465 4.465 7 H 0.025 0.975 8 C 0.009 3.991 9 N -0.960 5.960 10 Si 0.926 3.074 11 H -0.311 1.311 12 H -0.334 1.334 13 H -0.170 1.170 14 C -0.069 4.069 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.141 4.141 19 C 0.063 3.937 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.038 0.962 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.256 0.744 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.302 8.065 -8.301 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.265 5.265 3 C -0.084 4.084 4 C -0.188 4.188 5 C 0.044 3.956 6 C -0.503 4.503 7 H 0.043 0.957 8 C -0.185 4.185 9 N -0.602 5.602 10 Si 0.760 3.240 11 H -0.242 1.242 12 H -0.266 1.266 13 H -0.094 1.094 14 C -0.088 4.088 15 C -0.147 4.147 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.177 4.177 19 C -0.064 4.064 20 H 0.085 0.915 21 H 0.093 0.907 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.025 7.713 -7.789 14.199 hybrid contribution 0.603 0.372 0.343 0.787 sum -8.422 8.085 -7.446 13.847 Atomic orbital electron populations 1.22529 0.87130 1.02065 1.01452 1.65307 1.08915 1.15594 1.36650 1.23083 0.94471 0.90132 1.00761 1.23237 0.97027 0.99568 0.99005 1.19218 0.92519 0.91521 0.92318 1.20882 1.01154 0.92619 1.35647 0.95701 1.25927 0.95798 1.01815 0.95002 1.70081 1.08908 1.36222 1.44987 0.87103 0.73236 0.83332 0.80285 1.24207 1.26594 1.09355 1.22164 0.95406 0.96376 0.94825 1.22288 0.98809 0.97896 0.95747 1.22122 0.97458 0.97921 0.97934 1.22132 0.98817 0.98933 0.95865 1.22981 0.97982 0.99672 0.97104 1.22993 0.95175 0.98626 0.89638 0.91492 0.90717 0.94395 0.90920 0.91683 0.94117 0.89574 0.93549 0.90715 0.93899 0.91584 0.90188 0.92909 0.90209 0.93282 0.91266 0.92838 0.93356 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.53 127.69 1.22 1.67 16 2 N -0.54 -19.98 5.66 -906.87 -5.14 -25.12 16 3 C 0.04 1.47 6.51 86.40 0.56 2.04 16 4 C -0.15 -6.11 3.75 31.49 0.12 -5.99 16 5 C 0.05 1.95 0.43 -52.04 -0.02 1.93 16 6 C -0.46 -25.76 6.88 25.60 0.18 -25.58 16 7 H 0.02 1.58 7.82 -2.91 -0.02 1.55 16 8 C 0.01 0.50 4.40 84.65 0.37 0.87 16 9 N -0.96 -61.89 13.96 21.45 0.30 -61.59 16 10 Si 0.93 45.08 20.94 68.60 1.44 46.51 16 11 H -0.31 -15.50 6.76 99.48 0.67 -14.82 16 12 H -0.33 -17.14 7.11 99.48 0.71 -16.43 16 13 H -0.17 -6.79 2.27 99.48 0.23 -6.57 16 14 C -0.07 -2.53 1.91 -9.50 -0.02 -2.55 16 15 C -0.11 -3.93 5.73 31.74 0.18 -3.75 16 16 C -0.12 -3.54 6.81 31.39 0.21 -3.33 16 17 C -0.12 -3.79 6.80 31.32 0.21 -3.58 16 18 C -0.14 -5.38 3.95 31.67 0.12 -5.25 16 19 C 0.06 2.44 5.11 86.45 0.44 2.89 16 20 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 21 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 22 H 0.04 0.90 7.98 -2.39 -0.02 0.88 16 23 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.07 1.82 7.91 -2.39 -0.02 1.80 16 25 H 0.04 1.93 2.66 -2.39 -0.01 1.92 16 26 H 0.09 3.03 5.93 -2.38 -0.01 3.02 16 27 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.04 1.88 6.83 -2.39 -0.02 1.87 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.07 2.42 6.15 -2.39 -0.01 2.40 16 36 H 0.05 2.52 3.81 -2.39 -0.01 2.51 16 37 H 0.05 1.59 7.69 -2.38 -0.02 1.57 16 38 H 0.05 2.18 7.72 -2.39 -0.02 2.16 16 Total: -1.00 -67.15 264.61 0.68 -66.47 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.50 Total: 14.36 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 3.58 Total: -40.63 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -4.84 Total: -86.71 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.44 Total: 46.51 kcal Total: -67.15 0.68 -66.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.651 kcal (2) G-P(sol) polarization free energy of solvation -67.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds