Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46847 * 111.00069 * 2 1 4 4 C 1.53041 * 109.52250 * 174.15899 * 3 2 1 5 5 C 1.53115 * 109.27794 * 59.17762 * 4 3 2 6 6 C 1.53004 * 109.52330 * 182.37700 * 5 4 3 7 7 H 1.08998 * 109.47083 * 59.87515 * 6 5 4 8 8 C 1.50699 * 109.46918 * 299.87342 * 6 5 4 9 9 H 1.08003 * 120.00089 * 295.88430 * 8 6 5 10 10 C 1.37879 * 120.00098 * 115.88513 * 8 6 5 11 11 N 1.31516 * 119.99748 * 5.51325 * 10 8 6 12 12 Si 1.86798 * 120.00215 * 185.50878 * 10 8 6 13 13 H 1.48505 * 109.47082 * 60.00191 * 12 10 8 14 14 H 1.48502 * 109.47119 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47072 * 300.00326 * 12 10 8 16 16 C 1.52997 * 109.47010 * 179.87621 * 6 5 4 17 17 C 1.53001 * 117.49516 * 254.09071 * 16 6 5 18 18 C 1.53000 * 117.49619 * 185.43367 * 16 6 5 19 19 C 1.53113 * 109.21469 * 302.31242 * 5 4 3 20 20 C 1.46843 * 111.00106 * 235.78739 * 2 1 3 21 21 H 1.09001 * 109.46969 * 59.99858 * 1 2 3 22 22 H 1.08995 * 109.47325 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47081 * 300.00634 * 1 2 3 24 24 H 1.08994 * 109.46401 * 54.14407 * 3 2 1 25 25 H 1.08999 * 109.44980 * 294.16759 * 3 2 1 26 26 H 1.08993 * 109.50427 * 299.23700 * 4 3 2 27 27 H 1.09000 * 109.49931 * 179.12069 * 4 3 2 28 28 H 1.09005 * 109.52492 * 62.24787 * 5 4 3 29 29 H 0.96996 * 120.00282 * 180.02562 * 11 10 8 30 30 H 1.08997 * 115.55573 * 39.76406 * 16 6 5 31 31 H 1.08994 * 117.50256 * 0.02562 * 17 16 6 32 32 H 1.09000 * 117.49749 * 145.01999 * 17 16 6 33 33 H 1.09004 * 117.50216 * 214.97318 * 18 16 6 34 34 H 1.09004 * 117.50165 * 359.97438 * 18 16 6 35 35 H 1.09007 * 109.50722 * 177.62370 * 19 5 4 36 36 H 1.09002 * 109.50907 * 297.74767 * 19 5 4 37 37 H 1.08997 * 109.46285 * 305.85799 * 20 2 1 38 38 H 1.09003 * 109.46231 * 65.83631 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 6 5.6363 0.4461 -0.8412 7 1 5.8654 -0.0524 0.1006 8 6 6.2246 1.8335 -0.8313 9 1 6.1555 2.4557 -1.7114 10 6 6.8511 2.3087 0.3013 11 7 7.0315 1.5155 1.3347 12 14 7.4436 4.0789 0.3680 13 1 6.2888 4.9947 0.1859 14 1 8.0782 4.3392 1.6851 15 1 8.4342 4.3104 -0.7138 16 6 6.2349 -0.3533 -2.0003 17 6 6.7071 -1.7785 -1.7058 18 6 7.7315 -0.6663 -1.9440 19 6 3.5195 -0.8721 -1.0213 20 6 1.9953 -0.7708 -1.1337 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.5635 1.9257 0.8329 25 1 1.7325 1.8606 -0.9377 26 1 3.7814 0.8568 1.0906 27 1 3.9099 2.3512 0.1311 28 1 3.8887 1.0353 -1.9560 29 1 7.4718 1.8498 2.1317 30 1 5.7976 -0.1603 -2.9799 31 1 6.5910 -2.1467 -0.6865 32 1 6.5808 -2.5230 -2.4918 33 1 8.2787 -0.6796 -2.8866 34 1 8.2897 -0.3022 -1.0815 35 1 3.9122 -1.4304 -1.8712 36 1 3.7827 -1.3842 -0.0958 37 1 1.5634 -1.7715 -1.1241 38 1 1.7327 -0.2708 -2.0660 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261153191.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = -6.479277 kcal Electronic energy + Delta-G solvation = -16194.915877 eV Core-core repulsion = 13843.521759 eV Total energy + Delta-G solvation = -2351.394118 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.13117 -38.13858 -35.17814 -33.96255 -31.58976 -30.01433 -26.98607 -25.18679 -23.80510 -22.94895 -22.67181 -20.67022 -20.35828 -18.32909 -16.75767 -16.48834 -15.91200 -15.83292 -15.41303 -15.10871 -14.76200 -14.13031 -13.71897 -13.65878 -13.13762 -13.09890 -12.92276 -12.72365 -12.48773 -12.31481 -12.19403 -11.94780 -11.66564 -11.55876 -11.34494 -11.03380 -10.72242 -10.69415 -10.28720 -10.11669 -9.16648 -8.01853 -6.06070 1.41044 1.42236 1.48563 2.46872 3.12899 3.22856 3.37996 4.03580 4.14685 4.16411 4.31661 4.37789 4.47766 4.49081 4.58366 4.66215 4.74458 4.78278 4.87545 4.91862 4.96639 5.02735 5.03608 5.05981 5.24917 5.32622 5.33033 5.53949 5.59983 5.64310 5.66206 5.77857 6.01519 6.08876 6.24134 6.30889 6.53063 7.10118 7.56297 9.05543 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023237 B = 0.010455 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.693566 B = 2677.464151 C = 3600.171902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.064 3.936 4 C -0.084 4.084 5 C -0.066 4.066 6 C 0.064 3.936 7 H 0.032 0.968 8 C -0.502 4.502 9 H 0.041 0.959 10 C 0.024 3.976 11 N -0.922 5.922 12 Si 0.932 3.068 13 H -0.272 1.272 14 H -0.289 1.289 15 H -0.275 1.275 16 C -0.128 4.128 17 C -0.176 4.176 18 C -0.181 4.181 19 C -0.102 4.102 20 C 0.062 3.938 21 H 0.027 0.973 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.256 0.744 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.573 -4.042 -5.015 11.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.064 4.064 4 C -0.122 4.122 5 C -0.085 4.085 6 C 0.045 3.955 7 H 0.051 0.949 8 C -0.540 4.540 9 H 0.059 0.941 10 C -0.174 4.174 11 N -0.562 5.562 12 Si 0.759 3.241 13 H -0.197 1.197 14 H -0.215 1.215 15 H -0.201 1.201 16 C -0.146 4.146 17 C -0.212 4.212 18 C -0.218 4.218 19 C -0.139 4.139 20 C -0.066 4.066 21 H 0.045 0.955 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.344 -4.263 -4.400 11.174 hybrid contribution 0.555 1.577 -0.285 1.696 sum -8.789 -2.686 -4.686 10.316 Atomic orbital electron populations 1.22390 0.86136 1.02711 1.00843 1.61895 1.08603 1.13817 1.44213 1.22068 0.95375 0.89114 0.99830 1.21245 0.93125 0.99705 0.98165 1.21126 0.96641 0.94465 0.96250 1.18526 0.90470 0.93484 0.93007 0.94944 1.21187 1.35040 1.00260 0.97521 0.94078 1.25482 0.96083 0.99917 0.95919 1.70021 1.44556 1.36218 1.05430 0.86016 0.78694 0.82526 0.76865 1.19712 1.21519 1.20079 1.22450 0.95934 0.96114 1.00129 1.22952 1.04788 0.91961 1.01547 1.22644 0.93412 1.04266 1.01508 1.21604 0.94089 0.97058 1.01194 1.22123 0.95384 0.98158 0.90889 0.95458 0.90257 0.91076 0.90921 0.95139 0.94809 0.93471 0.94035 0.93456 0.89329 0.90946 0.87508 0.88709 0.92166 0.90927 0.93663 0.89611 0.95043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.59 127.69 1.22 1.84 16 2 N -0.56 -17.29 4.91 -922.32 -4.53 -21.82 16 3 C 0.06 2.17 5.46 86.33 0.47 2.64 16 4 C -0.08 -3.60 5.08 30.65 0.16 -3.45 16 5 C -0.07 -2.74 1.82 -10.72 -0.02 -2.76 16 6 C 0.06 3.08 1.81 -11.54 -0.02 3.06 16 7 H 0.03 1.81 6.73 -2.39 -0.02 1.80 16 8 C -0.50 -26.92 6.88 25.60 0.18 -26.74 16 9 H 0.04 2.22 7.82 -2.91 -0.02 2.20 16 10 C 0.02 1.33 5.45 84.65 0.46 1.79 16 11 N -0.92 -53.81 12.62 21.45 0.27 -53.54 16 12 Si 0.93 43.99 29.54 68.60 2.03 46.02 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 14 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 16 C -0.13 -5.34 3.90 -10.79 -0.04 -5.38 16 17 C -0.18 -6.44 9.97 30.62 0.31 -6.14 16 18 C -0.18 -7.47 10.02 30.62 0.31 -7.16 16 19 C -0.10 -3.57 5.09 30.69 0.16 -3.41 16 20 C 0.06 1.83 5.47 86.37 0.47 2.30 16 21 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 23 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 2.29 8.12 -2.39 -0.02 2.27 16 25 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 2.21 7.32 -2.39 -0.02 2.20 16 28 H 0.04 1.72 8.14 -2.38 -0.02 1.71 16 29 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.07 2.84 8.08 -2.39 -0.02 2.82 16 32 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.07 2.35 7.14 -2.38 -0.02 2.33 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.09 2.14 8.08 -2.39 -0.02 2.12 16 38 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -59.07 298.19 2.40 -56.67 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.99 Total: 16.08 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 3.65 Total: -43.41 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -4.26 Total: -75.36 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -59.07 2.40 -56.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153191.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.190 kcal (2) G-P(sol) polarization free energy of solvation -59.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds