Wall clock time and date at job start Mon Mar 30 2020 02:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46846 * 111.00110 * 2 1 4 4 C 1.53035 * 109.52466 * 185.83785 * 3 2 1 5 5 C 1.53127 * 109.27799 * 300.82625 * 4 3 2 6 6 C 1.53007 * 109.52211 * 177.55740 * 5 4 3 7 7 H 1.09000 * 109.47083 * 299.99838 * 6 5 4 8 8 C 1.50703 * 109.46915 * 59.99591 * 6 5 4 9 9 H 1.07998 * 119.99863 * 64.06030 * 8 6 5 10 10 C 1.37877 * 120.00206 * 244.05650 * 8 6 5 11 11 N 1.31517 * 119.99837 * 5.32086 * 10 8 6 12 12 Si 1.86794 * 120.00111 * 185.31946 * 10 8 6 13 13 H 1.48497 * 109.47169 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47196 * 119.99845 * 12 10 8 15 15 H 1.48496 * 109.47210 * 239.99957 * 12 10 8 16 16 C 1.52996 * 109.47114 * 179.97438 * 6 5 4 17 17 C 1.53007 * 117.51473 * 105.93200 * 16 6 5 18 18 C 1.52996 * 117.49818 * 174.55712 * 16 6 5 19 19 C 1.53115 * 109.16349 * 57.65346 * 5 4 3 20 20 C 1.46851 * 111.00035 * 124.21544 * 2 1 3 21 21 H 1.09007 * 109.47172 * 59.99407 * 1 2 3 22 22 H 1.08999 * 109.47267 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47227 * 299.99909 * 1 2 3 24 24 H 1.09002 * 109.46126 * 65.82779 * 3 2 1 25 25 H 1.08992 * 109.45606 * 305.85383 * 3 2 1 26 26 H 1.08996 * 109.50756 * 180.88420 * 4 3 2 27 27 H 1.09001 * 109.53340 * 60.78164 * 4 3 2 28 28 H 1.08992 * 109.51975 * 297.68009 * 5 4 3 29 29 H 0.96997 * 120.00032 * 180.02562 * 11 10 8 30 30 H 1.09000 * 115.55146 * 320.23372 * 16 6 5 31 31 H 1.09000 * 117.49878 * 214.97220 * 17 16 6 32 32 H 1.09002 * 117.49838 * 359.97438 * 17 16 6 33 33 H 1.08998 * 117.50146 * 359.97438 * 18 16 6 34 34 H 1.09005 * 117.49907 * 144.99714 * 18 16 6 35 35 H 1.09003 * 109.50286 * 62.28068 * 19 5 4 36 36 H 1.08992 * 109.50334 * 182.40749 * 19 5 4 37 37 H 1.09004 * 109.45936 * 294.17297 * 20 2 1 38 38 H 1.08996 * 109.46129 * 54.14262 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1187 0.5368 1.0144 6 6 5.6361 0.4447 0.8406 7 1 5.8643 -0.0564 -0.1001 8 6 6.2252 1.8318 0.8266 9 1 6.1562 2.4566 1.7047 10 6 6.8522 2.3031 -0.3073 11 7 6.8452 1.5852 -1.4092 12 14 7.7115 3.9614 -0.2785 13 1 7.5765 4.5656 1.0712 14 1 9.1505 3.7789 -0.5968 15 1 7.0914 4.8579 -1.2869 16 6 6.2351 -0.3516 2.0016 17 6 6.7070 -1.7778 1.7114 18 6 7.7314 -0.6657 1.9451 19 6 3.5181 -0.8716 1.0208 20 6 1.9952 -0.7709 1.1337 21 1 -0.3634 0.5140 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7325 1.8608 0.9376 25 1 1.5634 1.9256 -0.8330 26 1 3.9099 2.3511 -0.1309 27 1 3.7819 0.8571 -1.0906 28 1 3.8896 1.0359 1.9559 29 1 7.2866 1.9166 -2.2068 30 1 5.7986 -0.1553 2.9809 31 1 6.5810 -2.5198 2.4998 32 1 6.5904 -2.1491 0.6932 33 1 8.2890 -0.3054 1.0806 34 1 8.2794 -0.6760 2.8873 35 1 3.7813 -1.3837 0.0952 36 1 3.9098 -1.4304 1.8707 37 1 1.7325 -0.2710 2.0660 38 1 1.5634 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261153192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:46 Heat of formation + Delta-G solvation = -6.531121 kcal Electronic energy + Delta-G solvation = -16194.714879 eV Core-core repulsion = 13843.318513 eV Total energy + Delta-G solvation = -2351.396366 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12837 -38.14677 -35.18804 -33.94912 -31.58223 -30.01623 -26.99213 -25.17610 -23.79802 -22.95107 -22.67249 -20.67008 -20.34815 -18.33803 -16.73975 -16.51234 -15.90093 -15.83216 -15.40319 -15.10392 -14.76428 -14.12372 -13.68749 -13.68194 -13.12982 -13.08557 -12.97175 -12.72629 -12.50019 -12.27648 -12.20313 -11.93247 -11.65074 -11.54468 -11.35580 -11.02779 -10.71449 -10.67539 -10.32337 -10.09964 -9.16054 -8.01816 -6.06151 1.38163 1.42354 1.51285 2.46797 3.13483 3.21759 3.38428 4.03944 4.15693 4.16878 4.31697 4.38550 4.46784 4.48666 4.58902 4.66533 4.75073 4.78934 4.87925 4.91608 4.96621 5.03556 5.03691 5.06406 5.26160 5.31788 5.34431 5.51995 5.60083 5.65142 5.70029 5.78593 6.02758 6.08599 6.24883 6.31553 6.53112 7.10105 7.56426 9.05643 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024081 B = 0.010220 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.462724 B = 2739.173051 C = 3620.441657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.064 3.936 4 C -0.081 4.081 5 C -0.065 4.065 6 C 0.064 3.936 7 H 0.031 0.969 8 C -0.500 4.500 9 H 0.041 0.959 10 C 0.023 3.977 11 N -0.920 5.920 12 Si 0.933 3.067 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.284 1.284 16 C -0.129 4.129 17 C -0.176 4.176 18 C -0.181 4.181 19 C -0.102 4.102 20 C 0.062 3.938 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.027 0.973 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.040 0.960 29 H 0.256 0.744 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.966 -4.323 5.259 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.084 4.084 6 C 0.045 3.955 7 H 0.050 0.950 8 C -0.538 4.538 9 H 0.059 0.941 10 C -0.175 4.175 11 N -0.561 5.561 12 Si 0.760 3.240 13 H -0.194 1.194 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.148 4.148 17 C -0.213 4.213 18 C -0.219 4.219 19 C -0.139 4.139 20 C -0.065 4.065 21 H 0.089 0.911 22 H 0.098 0.902 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.751 -4.537 4.648 10.898 hybrid contribution 0.657 1.537 0.296 1.698 sum -8.094 -3.000 4.944 9.948 Atomic orbital electron populations 1.22391 0.86163 1.02706 1.00824 1.61898 1.08586 1.13827 1.44213 1.22073 0.95515 0.89087 0.99732 1.21200 0.92865 0.99638 0.98179 1.21112 0.96665 0.94419 0.96181 1.18527 0.90585 0.93537 0.92837 0.95015 1.21234 1.34867 1.00325 0.97371 0.94115 1.25481 0.96961 0.99541 0.95517 1.70044 1.45242 1.39199 1.01582 0.85896 0.78541 0.81627 0.77944 1.19380 1.21141 1.21069 1.22462 0.95977 0.96167 1.00164 1.22951 1.04731 0.91952 1.01624 1.22648 0.93359 1.04259 1.01588 1.21579 0.94102 0.97107 1.01158 1.22101 0.95419 0.98149 0.90877 0.91118 0.90244 0.95457 0.95195 0.91035 0.93645 0.94780 0.94152 0.93487 0.89286 0.87458 0.90906 0.92182 0.88538 0.93681 0.90937 0.95063 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.59 127.69 1.22 1.85 16 2 N -0.56 -17.51 4.91 -922.60 -4.53 -22.04 16 3 C 0.06 2.20 5.46 86.33 0.47 2.67 16 4 C -0.08 -3.50 5.08 30.65 0.16 -3.34 16 5 C -0.06 -2.72 1.83 -10.71 -0.02 -2.74 16 6 C 0.06 3.08 1.79 -11.54 -0.02 3.06 16 7 H 0.03 1.77 6.76 -2.39 -0.02 1.75 16 8 C -0.50 -26.80 6.88 25.60 0.18 -26.62 16 9 H 0.04 2.21 7.82 -2.91 -0.02 2.19 16 10 C 0.02 1.27 5.45 84.65 0.46 1.73 16 11 N -0.92 -53.52 12.63 21.45 0.27 -53.25 16 12 Si 0.93 44.08 29.54 68.60 2.03 46.11 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 16 C -0.13 -5.35 3.91 -10.79 -0.04 -5.39 16 17 C -0.18 -6.35 9.97 30.60 0.31 -6.05 16 18 C -0.18 -7.33 10.01 30.59 0.31 -7.02 16 19 C -0.10 -3.59 5.08 30.64 0.16 -3.44 16 20 C 0.06 1.84 5.46 86.32 0.47 2.32 16 21 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 22 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 23 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 26 H 0.04 2.17 7.32 -2.39 -0.02 2.15 16 27 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.07 2.82 8.08 -2.39 -0.02 2.80 16 33 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.10 3.36 8.14 -2.38 -0.02 3.34 16 35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 2.35 7.15 -2.39 -0.02 2.33 16 37 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 2.16 8.09 -2.39 -0.02 2.14 16 Total: -1.00 -59.06 298.22 2.40 -56.66 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.99 Total: 15.50 kcal Atomic # 6 Polarization: -46.63 SS G_CDS: 3.65 Total: -42.98 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -4.26 Total: -75.29 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -59.06 2.40 -56.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.127 kcal (2) G-P(sol) polarization free energy of solvation -59.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds