Wall clock time and date at job start Mon Mar 30 2020 03:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30574 * 1 3 3 Si 1.86800 * 120.00133 * 2 1 4 4 H 1.48493 * 109.47267 * 275.25991 * 3 2 1 5 5 H 1.48500 * 109.47008 * 35.26230 * 3 2 1 6 6 H 1.48498 * 109.46878 * 155.25608 * 3 2 1 7 7 C 1.40367 * 120.00020 * 180.27761 * 2 1 3 8 8 H 1.08002 * 120.00401 * 173.61427 * 7 2 1 9 9 C 1.40141 * 120.00027 * 353.61221 * 7 2 1 10 10 N 1.32539 * 125.31844 * 5.75985 * 9 7 2 11 11 C 1.33648 * 109.59705 * 179.97438 * 10 9 7 12 12 C 1.41714 * 107.65145 * 0.02562 * 11 10 9 13 13 N 1.32517 * 118.95920 * 179.97438 * 12 11 10 14 14 C 1.31790 * 120.57990 * 0.02562 * 13 12 11 15 15 N 1.32143 * 122.57069 * 359.97438 * 14 13 12 16 16 C 1.32224 * 121.40278 * 0.02562 * 15 14 13 17 17 Cl 1.73602 * 120.74790 * 180.02562 * 16 15 14 18 18 N 1.37123 * 106.31009 * 359.76019 * 12 11 10 19 19 H 0.97005 * 126.45947 * 180.23455 * 18 12 11 20 20 H 0.97002 * 120.00192 * 359.72692 * 1 2 3 21 21 H 1.08002 * 118.71612 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.3761 2.1106 -1.3941 5 1 1.4973 2.6180 0.8083 6 1 3.5884 1.4105 0.5860 7 6 2.0076 -1.2156 -0.0059 8 1 3.0826 -1.2181 -0.1099 9 6 1.3134 -2.4261 0.1233 10 7 -0.0055 -2.5542 0.1485 11 6 -0.3282 -3.8442 0.2817 12 6 0.8784 -4.5846 0.3458 13 7 0.8168 -5.9015 0.4799 14 6 -0.3477 -6.5144 0.5522 15 7 -1.4976 -5.8657 0.4968 16 6 -1.5412 -4.5509 0.3639 17 17 -3.0615 -3.7158 0.2936 18 7 1.8963 -3.6720 0.2390 19 1 2.8469 -3.8653 0.2455 20 1 -0.4850 0.8400 0.0040 21 1 -0.3627 -7.5887 0.6617 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157656.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:15 Heat of formation + Delta-G solvation = 73.204061 kcal Electronic energy + Delta-G solvation = -12591.277212 eV Core-core repulsion = 10107.582050 eV Total energy + Delta-G solvation = -2483.695162 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 224.016 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.07153 -37.99213 -35.75487 -33.97301 -32.65635 -31.01958 -29.27841 -26.79142 -22.86014 -22.54315 -20.60043 -18.51968 -17.17881 -16.62450 -15.80464 -14.87487 -14.82259 -14.00029 -13.40596 -13.09267 -12.64551 -11.83598 -11.61292 -11.37430 -11.33557 -10.77454 -10.61070 -10.17631 -9.96411 -9.54970 -9.05861 -8.55263 -7.98248 -7.52475 -7.00299 -5.01495 1.60896 2.18573 2.72632 2.82904 2.87617 2.93128 3.52643 3.79587 3.87195 4.69330 5.04336 5.06870 5.34919 5.60587 5.76754 6.57251 6.76700 6.85937 7.13146 7.45743 7.62349 7.87754 8.24805 8.59826 9.01580 9.40323 9.86309 Molecular weight = 224.02amu Principal moments of inertia in cm(-1) A = 0.037940 B = 0.009633 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.830962 B = 2905.828219 C = 3631.330870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.070 3.930 3 Si 0.927 3.073 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.413 4.413 8 H 0.098 0.902 9 C 0.416 3.584 10 N -0.505 5.505 11 C 0.051 3.949 12 C 0.237 3.763 13 N -0.511 5.511 14 C 0.225 3.775 15 N -0.509 5.509 16 C 0.182 3.818 17 Cl -0.038 7.038 18 N -0.630 5.630 19 H 0.413 0.587 20 H 0.287 0.713 21 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 -0.687 0.219 2.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.160 4.160 3 Si 0.750 3.250 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.450 4.450 8 H 0.116 0.884 9 C 0.182 3.818 10 N -0.230 5.230 11 C -0.087 4.087 12 C -0.014 4.014 13 N -0.231 5.231 14 C -0.063 4.063 15 N -0.227 5.227 16 C 0.004 3.996 17 Cl -0.010 7.010 18 N -0.250 5.250 19 H 0.251 0.749 20 H 0.099 0.901 21 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.008 -0.785 0.242 1.300 hybrid contribution 1.249 0.743 -0.015 1.453 sum 2.256 -0.042 0.227 2.268 Atomic orbital electron populations 1.69941 1.07382 1.29727 1.24474 1.25990 0.95115 1.01289 0.93630 0.85973 0.80215 0.79357 0.79482 1.19013 1.19520 1.18180 1.18719 0.95161 0.87160 1.43971 0.88396 1.20554 0.87202 0.83291 0.90781 1.71445 1.09335 1.11475 1.30718 1.20396 0.92318 0.94337 1.01621 1.19082 0.89523 0.88698 1.04114 1.66865 1.31263 1.07558 1.17456 1.23756 0.80427 0.99117 1.03012 1.67297 1.31741 1.07564 1.16145 1.20729 0.85084 0.88280 1.05518 1.98328 1.30229 1.76001 1.96464 1.43030 1.07262 1.06071 1.68664 0.74914 0.90114 0.79529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.84 11.88 55.57 0.66 -16.18 14 2 C 0.07 1.56 5.49 -17.29 -0.09 1.46 14 3 Si 0.93 16.11 29.57 -169.99 -5.03 11.09 14 4 H -0.27 -4.57 7.11 56.52 0.40 -4.17 14 5 H -0.27 -4.68 7.11 56.52 0.40 -4.28 14 6 H -0.26 -4.35 7.11 56.52 0.40 -3.95 14 7 C -0.41 -9.45 9.46 -38.07 -0.36 -9.82 14 8 H 0.10 1.96 7.86 -52.49 -0.41 1.55 14 9 C 0.42 10.26 7.56 -155.46 -1.18 9.09 14 10 N -0.51 -13.52 9.36 -10.21 -0.10 -13.62 14 11 C 0.05 1.31 7.10 -84.85 -0.60 0.70 14 12 C 0.24 5.63 8.51 -155.73 -1.33 4.30 14 13 N -0.51 -11.20 10.46 -13.63 -0.14 -11.34 14 14 C 0.22 4.54 12.25 -91.86 -1.13 3.42 14 15 N -0.51 -11.20 10.40 -11.19 -0.12 -11.32 14 16 C 0.18 4.34 7.42 -16.49 -0.12 4.21 14 17 Cl -0.04 -0.83 29.18 -51.86 -1.51 -2.34 14 18 N -0.63 -13.87 6.29 -11.34 -0.07 -13.95 14 19 H 0.41 7.53 8.96 -40.82 -0.37 7.17 14 20 H 0.29 6.23 8.29 -40.82 -0.34 5.89 14 21 H 0.19 2.92 8.06 -52.49 -0.42 2.50 14 LS Contribution 219.43 15.07 3.31 3.31 Total: -1.00 -28.12 219.43 -8.14 -36.26 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -0.33 Total: 4.71 kcal Atomic # 6 Polarization: 18.18 SS G_CDS: -4.81 Total: 13.37 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: 0.23 Total: -66.40 kcal Atomic # 14 Polarization: 16.11 SS G_CDS: -5.03 Total: 11.09 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.51 Total: -2.34 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -28.12 -8.14 -36.26 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157656.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.468 kcal (2) G-P(sol) polarization free energy of solvation -28.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds