Wall clock time and date at job start Mon Mar 30 2020 03:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00232 * 2 1 4 4 C 1.53034 * 109.50873 * 174.73779 * 3 2 1 5 5 C 1.53117 * 109.31363 * 59.52241 * 4 3 2 6 6 H 1.09004 * 109.53300 * 61.95915 * 5 4 3 7 7 C 1.50706 * 109.53091 * 182.10362 * 5 4 3 8 8 H 1.07995 * 120.00167 * 119.57789 * 7 5 4 9 9 C 1.37879 * 119.99394 * 299.85488 * 7 5 4 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47487 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47233 * 120.00158 * 11 9 7 14 14 H 1.48508 * 109.46883 * 239.99963 * 11 9 7 15 15 C 1.53173 * 109.18077 * 302.02985 * 5 4 3 16 16 C 1.46513 * 111.00305 * 235.68965 * 2 1 3 17 17 C 1.54003 * 109.81138 * 63.73654 * 16 2 1 18 18 C 1.54949 * 104.13592 * 217.24848 * 17 16 2 19 19 C 1.54909 * 102.77958 * 37.72207 * 18 17 16 20 20 C 1.53623 * 110.01868 * 306.38836 * 16 2 1 21 21 H 1.08998 * 109.47134 * 63.95392 * 1 2 3 22 22 H 1.09003 * 109.47245 * 183.95232 * 1 2 3 23 23 H 1.08996 * 109.47378 * 303.95317 * 1 2 3 24 24 H 1.09003 * 109.45942 * 54.73000 * 3 2 1 25 25 H 1.08998 * 109.46432 * 294.74957 * 3 2 1 26 26 H 1.08999 * 109.50202 * 299.56735 * 4 3 2 27 27 H 1.09006 * 109.52432 * 179.48680 * 4 3 2 28 28 H 0.96996 * 119.99730 * 179.97438 * 10 9 7 29 29 H 1.08999 * 109.49799 * 177.02123 * 15 5 4 30 30 H 1.09003 * 109.49518 * 297.10328 * 15 5 4 31 31 H 1.08999 * 110.50110 * 335.90917 * 17 16 2 32 32 H 1.09000 * 110.49938 * 98.58179 * 17 16 2 33 33 H 1.09000 * 110.74817 * 279.39948 * 18 17 16 34 34 H 1.09000 * 110.91099 * 156.12282 * 18 17 16 35 35 H 1.09006 * 110.48417 * 203.52280 * 19 18 17 36 36 H 1.09001 * 110.59521 * 80.94404 * 19 18 17 37 37 H 1.08998 * 110.04495 * 238.36272 * 20 16 2 38 38 H 1.08996 * 110.05493 * 359.84036 * 20 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5196 1.3337 0.1323 5 6 4.1105 0.5480 -1.0416 6 1 3.8676 1.0524 -1.9769 7 6 5.6074 0.4636 -0.8887 8 1 6.0883 -0.4997 -0.8049 9 6 6.3624 1.6167 -0.8503 10 7 5.7763 2.7901 -0.9464 11 14 8.2179 1.5121 -0.6615 12 1 8.6272 0.0874 -0.5744 13 1 8.8714 2.1444 -1.8356 14 1 8.6304 2.2217 0.5762 15 6 3.5166 -0.8638 -1.0520 16 6 1.9941 -0.7710 -1.1298 17 6 1.5826 -0.1020 -2.4545 18 6 1.2909 -1.2909 -3.4043 19 6 0.6160 -2.3219 -2.4655 20 6 1.3831 -2.1805 -1.1339 21 1 -0.3633 0.4512 -0.9233 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3634 0.5739 0.8524 24 1 1.5716 1.9231 0.8391 25 1 1.7240 1.8647 -0.9333 26 1 3.7916 0.8475 1.0692 27 1 3.9113 2.3509 0.1232 28 1 6.3075 3.6012 -0.9189 29 1 3.8935 -1.4107 -1.9163 30 1 3.8021 -1.3854 -0.1384 31 1 0.6870 0.5032 -2.3144 32 1 2.3985 0.5067 -2.8443 33 1 2.2168 -1.6921 -3.8165 34 1 0.6116 -0.9932 -4.2030 35 1 0.7264 -3.3304 -2.8642 36 1 -0.4379 -2.0811 -2.3260 37 1 2.1725 -2.9300 -1.0758 38 1 0.6977 -2.2932 -0.2939 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261216335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:58 Heat of formation + Delta-G solvation = -10.185523 kcal Electronic energy + Delta-G solvation = -16638.655638 eV Core-core repulsion = 14287.100805 eV Total energy + Delta-G solvation = -2351.554833 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85170 -35.22587 -33.73951 -31.31680 -29.46074 -28.30190 -26.87628 -24.11730 -23.90718 -21.67168 -20.77293 -19.39087 -17.14690 -16.34278 -15.83373 -14.88905 -14.51990 -14.31568 -14.13607 -13.30622 -12.74770 -12.50994 -12.22214 -12.17134 -11.60111 -11.37201 -11.00068 -10.95289 -10.89883 -10.73036 -10.65747 -10.62370 -10.21548 -10.19190 -9.95133 -9.89540 -9.29941 -8.82444 -8.63391 -8.22490 -7.54323 -5.93543 -3.98413 3.32419 3.40553 3.44802 4.47755 4.54038 4.99350 5.07842 5.25388 5.36545 5.61380 5.72894 5.81428 5.85819 5.88516 5.95348 5.99758 6.08223 6.16828 6.20618 6.26060 6.32787 6.43325 6.61240 6.61966 6.66682 6.71467 6.77488 6.96830 7.17131 7.26298 7.51554 7.73122 7.84809 7.92337 8.12057 8.22071 8.53444 9.05645 9.65645 11.12407 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039140 B = 0.008603 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.216961 B = 3254.020258 C = 3572.602886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.530 5.530 3 C 0.056 3.944 4 C -0.105 4.105 5 C 0.048 3.952 6 H 0.025 0.975 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.060 3.940 10 N -0.892 5.892 11 Si 0.888 3.112 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.285 1.285 15 C -0.090 4.090 16 C 0.115 3.885 17 C -0.155 4.155 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.119 4.119 21 H 0.021 0.979 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.025 0.975 26 H 0.041 0.959 27 H 0.092 0.908 28 H 0.258 0.742 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.973 -5.958 -1.368 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.253 5.253 3 C -0.071 4.071 4 C -0.143 4.143 5 C 0.029 3.971 6 H 0.043 0.957 7 C -0.546 4.546 8 H 0.072 0.928 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.716 3.284 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.128 4.128 16 C 0.026 3.974 17 C -0.194 4.194 18 C -0.158 4.158 19 C -0.161 4.161 20 C -0.157 4.157 21 H 0.040 0.960 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.760 -5.992 -0.914 11.489 hybrid contribution 0.687 0.505 -0.606 1.046 sum -9.073 -5.487 -1.520 10.712 Atomic orbital electron populations 1.22425 0.89619 1.01290 0.99610 1.62052 1.05667 1.14847 1.42778 1.22261 0.98992 0.87329 0.98555 1.21661 0.89295 1.03955 0.99437 1.18748 0.94192 0.89667 0.94448 0.95712 1.21265 0.91811 0.92380 1.49193 0.92778 1.24962 0.98207 0.95543 0.95327 1.69886 1.34913 0.97195 1.51139 0.86601 0.86180 0.78047 0.77556 1.19852 1.21183 1.21121 1.21663 0.90271 1.00684 1.00173 1.21508 0.96790 0.91676 0.87460 1.23101 1.01419 0.97984 0.96905 1.22430 1.00080 0.96143 0.97189 1.22371 0.98907 0.98766 0.96072 1.22340 0.99483 0.96829 0.97031 0.96046 0.91776 0.92386 0.92901 0.95714 0.93992 0.89010 0.93221 0.93238 0.92738 0.92331 0.90224 0.91463 0.92515 0.92269 0.92416 0.91585 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.91 60.06 0.54 0.82 16 2 N -0.53 -9.73 4.70 -226.61 -1.06 -10.79 16 3 C 0.06 1.13 5.22 -3.81 -0.02 1.11 16 4 C -0.11 -2.53 5.12 -26.65 -0.14 -2.66 16 5 C 0.05 1.19 1.92 -91.62 -0.18 1.01 16 6 H 0.02 0.67 6.31 -51.93 -0.33 0.34 16 7 C -0.51 -14.05 8.57 -34.44 -0.29 -14.34 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 10 N -0.89 -25.51 11.36 55.43 0.63 -24.88 16 11 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C -0.09 -1.92 3.83 -26.78 -0.10 -2.02 16 16 C 0.12 2.08 0.58 -131.10 -0.08 2.00 16 17 C -0.16 -2.68 4.37 -25.18 -0.11 -2.79 16 18 C -0.12 -1.74 6.91 -24.70 -0.17 -1.91 16 19 C -0.12 -1.62 6.83 -25.03 -0.17 -1.80 16 20 C -0.12 -1.81 5.59 -25.71 -0.14 -1.95 16 21 H 0.02 0.32 6.14 -51.93 -0.32 0.00 16 22 H 0.06 0.87 5.95 -51.93 -0.31 0.56 16 23 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 24 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 25 H 0.02 0.51 6.90 -51.93 -0.36 0.15 16 26 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.99 5.59 -51.93 -0.29 0.69 16 32 H 0.08 1.58 5.93 -51.93 -0.31 1.27 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.01 7.66 -51.93 -0.40 0.61 16 38 H 0.07 1.02 5.91 -51.93 -0.31 0.71 16 LS Contribution 275.84 15.07 4.16 4.16 Total: -1.00 -27.90 275.84 -8.54 -36.44 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.28 Total: -0.42 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -0.96 Total: -20.96 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.43 Total: -35.67 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.90 -8.54 -36.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.255 kcal (2) G-P(sol) polarization free energy of solvation -27.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds