Wall clock time and date at job start Mon Mar 30 2020 03:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46914 * 110.99781 * 2 1 4 4 C 1.53033 * 109.50752 * 185.23921 * 3 2 1 5 5 C 1.53122 * 109.35365 * 300.53254 * 4 3 2 6 6 H 1.08997 * 109.53044 * 297.98856 * 5 4 3 7 7 C 1.50699 * 109.52444 * 177.84420 * 5 4 3 8 8 H 1.07998 * 120.00034 * 272.70401 * 7 5 4 9 9 C 1.37883 * 120.00084 * 92.70934 * 7 5 4 10 10 N 1.31514 * 119.99730 * 352.05386 * 9 7 5 11 11 Si 1.86800 * 120.00031 * 172.05081 * 9 7 5 12 12 H 1.48502 * 109.46850 * 89.99947 * 11 9 7 13 13 H 1.48493 * 109.47119 * 330.00253 * 11 9 7 14 14 H 1.48495 * 109.47152 * 209.99812 * 11 9 7 15 15 C 1.53179 * 109.17757 * 57.91891 * 5 4 3 16 16 C 1.46508 * 111.00589 * 124.24167 * 2 1 3 17 17 C 1.53998 * 109.83293 * 53.87338 * 16 2 1 18 18 C 1.54957 * 104.13616 * 217.26785 * 17 16 2 19 19 C 1.54911 * 102.78267 * 37.71443 * 18 17 16 20 20 C 1.53628 * 110.00199 * 296.51644 * 16 2 1 21 21 H 1.09003 * 109.47715 * 51.47510 * 1 2 3 22 22 H 1.09011 * 109.46811 * 171.47022 * 1 2 3 23 23 H 1.08997 * 109.47534 * 291.46702 * 1 2 3 24 24 H 1.08993 * 109.46531 * 65.22835 * 3 2 1 25 25 H 1.08997 * 109.45865 * 305.24664 * 3 2 1 26 26 H 1.09000 * 109.48395 * 180.56804 * 4 3 2 27 27 H 1.09002 * 109.48605 * 60.50088 * 4 3 2 28 28 H 0.96998 * 119.99740 * 4.26341 * 10 9 7 29 29 H 1.09001 * 109.50347 * 62.86259 * 15 5 4 30 30 H 1.08997 * 109.49936 * 182.97997 * 15 5 4 31 31 H 1.08998 * 110.49893 * 335.92844 * 17 16 2 32 32 H 1.08995 * 110.49856 * 98.60793 * 17 16 2 33 33 H 1.09001 * 110.75128 * 279.39383 * 18 17 16 34 34 H 1.08995 * 110.90694 * 156.10990 * 18 17 16 35 35 H 1.08996 * 110.48853 * 203.52129 * 19 18 17 36 36 H 1.09005 * 110.48639 * 80.88136 * 19 18 17 37 37 H 1.08998 * 110.05357 * 238.37065 * 20 16 2 38 38 H 1.09005 * 110.05048 * 359.84419 * 20 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 3.5195 1.3339 -0.1317 5 6 4.1110 0.5474 1.0414 6 1 3.8689 1.0514 1.9770 7 6 5.6077 0.4627 0.8874 8 1 6.0467 -0.3379 0.3106 9 6 6.4166 1.4072 1.4830 10 7 5.8825 2.4659 2.0518 11 14 8.2711 1.1830 1.4821 12 1 8.8457 1.8174 0.2686 13 1 8.5945 -0.2663 1.4833 14 1 8.8473 1.8198 2.6935 15 6 3.5165 -0.8643 1.0514 16 6 1.9941 -0.7696 1.1307 17 6 1.3841 -2.1836 1.1286 18 6 1.1746 -2.5076 2.6293 19 6 0.7280 -1.1448 3.2151 20 6 1.5808 -0.1078 2.4540 21 1 -0.3635 0.6401 -0.8040 22 1 -0.3633 -1.0164 -0.1524 23 1 -0.3634 0.3761 0.9563 24 1 1.7235 1.8650 0.9331 25 1 1.5718 1.9231 -0.8393 26 1 3.9106 2.3513 -0.1215 27 1 3.7916 0.8487 -1.0691 28 1 4.9179 2.5520 2.1070 29 1 3.8006 -1.3853 0.1371 30 1 3.8937 -1.4117 1.9152 31 1 0.4305 -2.1871 0.6007 32 1 2.0741 -2.8963 0.6770 33 1 2.1072 -2.8376 3.0870 34 1 0.3951 -3.2582 2.7601 35 1 0.9385 -1.1015 4.2837 36 1 -0.3327 -0.9780 3.0273 37 1 2.4659 0.1480 3.0364 38 1 0.9917 0.7877 2.2560 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:00 Heat of formation + Delta-G solvation = -32.313531 kcal Electronic energy + Delta-G solvation = -16660.571772 eV Core-core repulsion = 14308.057397 eV Total energy + Delta-G solvation = -2352.514375 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.45142 -37.00568 -35.65200 -33.23858 -31.18806 -29.66850 -28.33738 -25.76492 -25.48192 -23.61747 -22.24869 -21.14885 -18.99579 -18.76728 -17.30206 -16.47861 -16.21253 -15.66896 -15.46647 -15.37382 -14.43211 -14.19502 -14.05514 -13.66696 -13.43989 -12.91248 -12.72395 -12.59294 -12.45837 -12.33344 -12.16838 -11.98020 -11.95679 -11.78118 -11.61655 -11.35852 -11.27392 -10.85577 -10.53613 -10.20966 -9.11980 -8.60538 -6.28243 1.50366 1.59281 1.76936 2.56512 2.99693 3.19690 3.66005 3.73843 3.93898 4.15400 4.24975 4.34104 4.36910 4.44031 4.54203 4.61431 4.69281 4.71592 4.74540 4.80864 4.86984 4.90897 4.98613 5.03879 5.09276 5.14063 5.17738 5.24401 5.27653 5.42634 5.48381 5.59405 5.74471 6.15953 6.21044 6.28775 6.35957 6.69362 7.50436 8.78971 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035975 B = 0.008801 C = 0.008014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.130568 B = 3180.685532 C = 3492.931981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.537 5.537 3 C 0.063 3.937 4 C -0.095 4.095 5 C 0.027 3.973 6 H 0.006 0.994 7 C -0.604 4.604 8 H 0.039 0.961 9 C -0.033 4.033 10 N -0.939 5.939 11 Si 1.112 2.888 12 H -0.276 1.276 13 H -0.272 1.272 14 H -0.283 1.283 15 C -0.075 4.075 16 C 0.112 3.888 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.149 4.149 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.028 0.972 24 H 0.020 0.980 25 H 0.078 0.922 26 H 0.025 0.975 27 H 0.042 0.958 28 H 0.256 0.744 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.166 -7.758 -0.721 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.261 5.261 3 C -0.065 4.065 4 C -0.134 4.134 5 C 0.008 3.992 6 H 0.024 0.976 7 C -0.642 4.642 8 H 0.057 0.943 9 C -0.230 4.230 10 N -0.577 5.577 11 Si 0.935 3.065 12 H -0.201 1.201 13 H -0.197 1.197 14 H -0.209 1.209 15 C -0.113 4.113 16 C 0.022 3.978 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.152 4.152 20 C -0.189 4.189 21 H 0.091 0.909 22 H 0.105 0.895 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.096 0.904 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.597 -7.264 -0.729 12.868 hybrid contribution -1.240 0.231 0.314 1.300 sum -11.837 -7.033 -0.415 13.775 Atomic orbital electron populations 1.22537 0.86417 1.03274 1.00595 1.61981 1.08441 1.12798 1.42832 1.22067 0.95331 0.89653 0.99445 1.21553 0.93573 0.98491 0.99748 1.18905 0.94151 0.92897 0.93261 0.97625 1.22357 0.93236 1.13823 1.34812 0.94308 1.27196 1.10673 0.91981 0.93176 1.70898 1.13463 1.27637 1.45719 0.82997 0.70006 0.76396 0.77137 1.20132 1.19735 1.20856 1.21463 0.93071 0.97566 0.99236 1.21537 0.94303 0.94187 0.87790 1.22559 1.01418 0.93664 0.97401 1.22492 1.01487 0.97070 0.94548 1.22324 0.99406 0.94324 0.99103 1.22772 0.99273 0.99187 0.97620 0.90862 0.89463 0.95330 0.96144 0.90360 0.95588 0.93872 0.93298 0.93978 0.93972 0.89062 0.91890 0.92480 0.88972 0.91682 0.90210 0.94430 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.90 127.69 1.14 1.62 16 2 N -0.54 -18.14 4.72 -870.81 -4.11 -22.25 16 3 C 0.06 2.39 5.18 86.31 0.45 2.84 16 4 C -0.10 -4.52 5.35 30.65 0.16 -4.35 16 5 C 0.03 1.38 1.66 -11.44 -0.02 1.36 16 6 H 0.01 0.32 5.25 -2.39 -0.01 0.31 16 7 C -0.60 -35.07 8.31 25.60 0.21 -34.86 16 8 H 0.04 2.26 7.83 -2.91 -0.02 2.24 16 9 C -0.03 -1.92 5.44 84.66 0.46 -1.46 16 10 N -0.94 -58.59 13.62 21.45 0.29 -58.30 16 11 Si 1.11 51.80 29.91 68.60 2.05 53.85 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 C -0.08 -3.31 3.82 30.57 0.12 -3.19 16 16 C 0.11 3.87 0.57 4.06 0.00 3.88 16 17 C -0.11 -3.08 5.81 31.60 0.18 -2.90 16 18 C -0.12 -2.82 6.91 31.92 0.22 -2.60 16 19 C -0.11 -2.90 6.84 31.70 0.22 -2.68 16 20 C -0.15 -5.07 4.40 31.26 0.14 -4.93 16 21 H 0.07 1.66 8.03 -2.39 -0.02 1.64 16 22 H 0.09 1.87 5.89 -2.38 -0.01 1.85 16 23 H 0.03 0.70 6.43 -2.39 -0.02 0.69 16 24 H 0.02 0.80 6.33 -2.39 -0.02 0.79 16 25 H 0.08 2.63 8.04 -2.39 -0.02 2.61 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.26 16.19 6.68 -92.71 -0.62 15.57 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 2.13 5.36 -2.39 -0.01 2.11 16 32 H 0.06 1.78 7.82 -2.39 -0.02 1.76 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.04 1.53 6.52 -2.39 -0.02 1.51 16 38 H 0.06 1.93 5.16 -2.38 -0.01 1.92 16 Total: -1.00 -65.05 277.25 2.68 -62.37 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.17 Total: 11.61 kcal Atomic # 6 Polarization: -50.56 SS G_CDS: 3.28 Total: -47.28 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -3.82 Total: -80.56 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.05 Total: 53.85 kcal Total: -65.05 2.68 -62.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.056 kcal (2) G-P(sol) polarization free energy of solvation -65.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds