Wall clock time and date at job start Mon Mar 30 2020 03:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30523 * 1 3 3 Si 1.86804 * 119.99611 * 2 1 4 4 H 1.48504 * 109.46614 * 85.01819 * 3 2 1 5 5 H 1.48496 * 109.47098 * 205.01419 * 3 2 1 6 6 H 1.48500 * 109.47097 * 325.02052 * 3 2 1 7 7 C 1.40637 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00215 * 186.47090 * 7 2 1 9 9 C 1.38682 * 120.00024 * 6.47216 * 7 2 1 10 10 O 1.35220 * 126.38755 * 5.90360 * 9 7 2 11 11 N 1.41499 * 109.51861 * 179.84420 * 10 9 7 12 12 C 1.30565 * 109.50654 * 0.43401 * 11 10 9 13 13 C 1.40990 * 126.39087 * 186.21785 * 9 7 2 14 14 N 1.33970 * 135.39450 * 0.02562 * 13 9 7 15 15 C 1.30896 * 121.58218 * 179.97438 * 14 13 9 16 16 O 1.34845 * 117.84441 * 179.97438 * 15 14 13 17 17 O 1.33898 * 124.30625 * 0.02562 * 15 14 13 18 18 C 1.35169 * 121.45483 * 359.97438 * 17 15 14 19 19 O 1.21547 * 121.39240 * 179.97438 * 18 17 15 20 20 H 0.96997 * 120.00045 * 359.97438 * 1 2 3 21 21 H 0.96698 * 116.99649 * 90.00666 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 2.3813 2.1072 1.3949 5 1 3.5854 1.4122 -0.5920 6 1 1.4931 2.6200 -0.8026 7 6 2.0085 -1.2179 -0.0005 8 1 3.0834 -1.2209 0.1049 9 6 1.3218 -2.4151 -0.1365 10 8 0.0008 -2.5582 -0.3871 11 7 -0.3205 -3.9343 -0.4585 12 6 0.7553 -4.6445 -0.2513 13 6 1.8697 -3.7100 -0.0330 14 7 3.0884 -4.2141 0.2029 15 6 3.3005 -5.5052 0.2416 16 8 4.5570 -5.9299 0.4844 17 8 2.3521 -6.4317 0.0550 18 6 1.0689 -6.0874 -0.1938 19 8 0.2089 -6.9295 -0.3635 20 1 -0.4850 0.8400 0.0004 21 1 4.8020 -6.0699 1.4094 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261241491.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:07 Heat of formation + Delta-G solvation = -84.597992 kcal Electronic energy + Delta-G solvation = -14756.234055 eV Core-core repulsion = 11792.694167 eV Total energy + Delta-G solvation = -2963.539888 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.031 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.91372 -41.30939 -39.75569 -37.95850 -36.43540 -36.14320 -33.39607 -31.46507 -28.10375 -26.72860 -25.09615 -22.94343 -20.95769 -20.62120 -19.44797 -18.74705 -18.19280 -17.63034 -16.84808 -16.44492 -16.28734 -15.93309 -15.30831 -14.63497 -14.01528 -13.81657 -13.49039 -13.19076 -13.03635 -12.74472 -12.58836 -12.29576 -12.00400 -11.88763 -11.32499 -10.73020 -9.47888 -9.29472 -7.19894 -0.37984 0.15403 0.64535 1.00319 1.35464 1.58831 1.63120 1.82183 2.06489 2.21586 2.60971 2.79615 2.88007 3.60576 4.13552 4.55200 4.62300 5.02526 5.26991 5.55334 5.74243 5.82976 5.95058 6.58878 6.74103 7.13739 7.66379 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.038946 B = 0.009233 C = 0.007502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.773446 B = 3032.018684 C = 3731.418029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.013 3.987 3 Si 1.024 2.976 4 H -0.247 1.247 5 H -0.240 1.240 6 H -0.257 1.257 7 C -0.331 4.331 8 H 0.146 0.854 9 C 0.205 3.795 10 O -0.090 6.090 11 N -0.350 5.350 12 C -0.019 4.019 13 C -0.207 4.207 14 N -0.400 5.400 15 C 0.352 3.648 16 O -0.422 6.422 17 O -0.299 6.299 18 C 0.578 3.422 19 O -0.464 6.464 20 H 0.321 0.679 21 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.703 3.558 2.854 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.215 4.215 3 Si 0.839 3.161 4 H -0.171 1.171 5 H -0.163 1.163 6 H -0.180 1.180 7 C -0.357 4.357 8 H 0.164 0.836 9 C 0.147 3.853 10 O -0.095 6.095 11 N -0.107 5.107 12 C -0.189 4.189 13 C -0.333 4.333 14 N -0.139 5.139 15 C 0.101 3.899 16 O -0.233 6.233 17 O -0.203 6.203 18 C 0.421 3.579 19 O -0.349 6.349 20 H 0.134 0.866 21 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 6.263 3.611 2.043 7.512 hybrid contribution -0.024 -0.302 0.520 0.602 sum 6.238 3.309 2.563 7.512 Atomic orbital electron populations 1.69645 1.10264 1.34845 1.21263 1.27888 0.96015 1.06725 0.90884 0.84535 0.79099 0.71718 0.80780 1.17084 1.16295 1.18025 1.20095 0.97858 0.87277 1.30500 0.83637 1.19755 0.82520 0.92690 0.90323 1.89427 1.22503 1.18540 1.78984 1.79808 1.17174 0.86630 1.27134 1.24618 0.96893 0.96258 1.01100 1.20069 0.87990 0.90815 1.34420 1.66399 1.22793 1.09593 1.15093 1.20287 0.81809 0.79834 1.07995 1.84406 1.16673 1.86806 1.35390 1.83368 1.17482 1.44049 1.75440 1.18820 0.79294 0.84963 0.74860 1.90854 1.42437 1.54578 1.47025 0.86592 0.71078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -31.99 12.06 21.95 0.26 -31.73 14 2 C 0.01 0.50 5.50 85.47 0.47 0.97 14 3 Si 1.02 27.45 29.57 68.60 2.03 29.48 14 4 H -0.25 -6.25 7.11 99.48 0.71 -5.54 14 5 H -0.24 -6.16 7.11 99.48 0.71 -5.45 14 6 H -0.26 -6.53 7.11 99.48 0.71 -5.82 14 7 C -0.33 -14.72 9.30 22.96 0.21 -14.51 14 8 H 0.15 5.82 7.86 -2.91 -0.02 5.80 14 9 C 0.20 10.56 6.86 23.05 0.16 10.72 14 10 O -0.09 -5.01 10.43 25.41 0.27 -4.75 14 11 N -0.35 -19.44 12.87 -44.95 -0.58 -20.02 14 12 C -0.02 -0.99 7.72 44.17 0.34 -0.65 14 13 C -0.21 -10.49 7.49 41.81 0.31 -10.18 14 14 N -0.40 -17.95 10.41 -417.90 -4.35 -22.30 14 15 C 0.35 13.82 8.91 130.38 1.16 14.98 14 16 O -0.42 -12.22 13.48 -58.10 -0.78 -13.00 14 17 O -0.30 -12.53 9.87 23.78 0.23 -12.30 14 18 C 0.58 27.50 8.32 70.34 0.59 28.09 14 19 O -0.46 -23.03 17.99 19.57 0.35 -22.67 14 20 H 0.32 11.76 8.29 -92.71 -0.77 10.99 14 21 H 0.43 6.76 9.15 -74.06 -0.68 6.08 14 Total: -1.00 -63.12 217.41 1.33 -61.79 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.65 Total: 6.06 kcal Atomic # 6 Polarization: 26.19 SS G_CDS: 3.24 Total: 29.44 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -4.66 Total: -74.04 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: 0.07 Total: -52.72 kcal Atomic # 14 Polarization: 27.45 SS G_CDS: 2.03 Total: 29.48 kcal Total: -63.12 1.33 -61.79 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241491.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.807 kcal (2) G-P(sol) polarization free energy of solvation -63.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds