Wall clock time and date at job start Mon Mar 30 2020 03:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30598 * 1 3 3 Si 1.86808 * 119.99733 * 2 1 4 4 H 1.48499 * 109.46621 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47152 * 299.99728 * 3 2 1 6 6 H 1.48500 * 109.47183 * 59.99990 * 3 2 1 7 7 C 1.40428 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99829 * 162.53187 * 7 2 1 9 9 C 1.39840 * 119.99818 * 342.52774 * 7 2 1 10 10 C 1.40406 * 120.56683 * 334.43478 * 9 7 2 11 11 C 1.38225 * 121.99353 * 179.74141 * 10 9 7 12 12 C 1.37810 * 122.65306 * 0.24097 * 11 10 9 13 13 Cl 1.73595 * 120.09340 * 180.02562 * 12 11 10 14 14 C 1.45152 * 119.81974 * 0.02562 * 12 11 10 15 15 N 1.30958 * 138.79351 * 179.97438 * 14 12 11 16 16 O 1.21543 * 108.91992 * 180.02562 * 15 14 12 17 17 N 1.21520 * 116.22860 * 359.97438 * 16 15 14 18 18 C 1.30137 * 109.21459 * 359.97438 * 17 16 15 19 19 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 20 20 H 1.08004 * 119.00032 * 0.02959 * 10 9 7 21 21 H 1.08003 * 118.67718 * 180.26142 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6179 0.0000 4 1 3.6999 1.3464 0.0006 5 1 1.8812 2.3965 -1.2125 6 1 1.8812 2.3965 1.2125 7 6 2.0081 -1.2161 0.0005 8 1 3.0507 -1.2378 -0.2802 9 6 1.3573 -2.3991 0.3647 10 6 0.2380 -2.3666 1.2117 11 6 -0.4307 -3.5169 1.5861 12 6 -0.0475 -4.7710 1.1625 13 17 -0.9365 -6.1718 1.6735 14 6 1.1015 -4.9176 0.2878 15 7 1.7668 -5.8721 -0.3133 16 8 2.6819 -5.3786 -0.9428 17 7 2.7819 -4.1689 -0.8860 18 6 1.8352 -3.6960 -0.1285 19 1 -0.4850 0.8401 -0.0004 20 1 -0.1140 -1.4135 1.5781 21 1 -1.2884 -3.4294 2.2367 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261274577.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:03 Heat of formation + Delta-G solvation = 94.219652 kcal Electronic energy + Delta-G solvation = -12640.429359 eV Core-core repulsion = 10125.352751 eV Total energy + Delta-G solvation = -2515.076609 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 224.009 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.13140 -38.83113 -37.11740 -35.88460 -35.21120 -33.51508 -31.73684 -27.66781 -25.75756 -25.13120 -21.91204 -20.05823 -19.52544 -18.71464 -18.54742 -17.24419 -16.38515 -15.29718 -15.14216 -14.05233 -13.86644 -13.74349 -13.45316 -13.02221 -12.75869 -12.53445 -12.35810 -12.19324 -11.84514 -11.81431 -11.58230 -11.25377 -10.42190 -9.29651 -9.08036 -6.65713 -0.45155 0.75642 1.05985 1.36319 1.51137 1.56826 1.65718 2.07151 2.30504 2.60373 2.91566 3.12473 3.40996 4.04686 4.40268 4.60286 4.73763 4.95077 5.17521 5.49469 5.63011 5.82805 6.17552 6.28012 6.39266 7.76478 7.90416 Molecular weight = 224.01amu Principal moments of inertia in cm(-1) A = 0.036409 B = 0.009632 C = 0.007779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.856478 B = 2906.146733 C = 3598.792912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.030 3.970 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.256 1.256 6 H -0.249 1.249 7 C -0.367 4.367 8 H 0.101 0.899 9 C 0.126 3.874 10 C -0.272 4.272 11 C 0.020 3.980 12 C -0.227 4.227 13 Cl -0.095 7.095 14 C 0.071 3.929 15 N -0.417 5.417 16 O 0.308 5.692 17 N -0.353 5.353 18 C -0.016 4.016 19 H 0.316 0.684 20 H 0.136 0.864 21 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 4.406 1.793 4.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.197 4.197 3 Si 0.818 3.182 4 H -0.177 1.177 5 H -0.180 1.180 6 H -0.173 1.173 7 C -0.393 4.393 8 H 0.119 0.881 9 C 0.120 3.880 10 C -0.295 4.295 11 C -0.001 4.001 12 C -0.260 4.260 13 Cl -0.067 7.067 14 C -0.081 4.081 15 N -0.155 5.155 16 O 0.096 5.904 17 N -0.077 5.077 18 C -0.175 4.175 19 H 0.129 0.871 20 H 0.153 0.847 21 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.584 3.701 1.110 3.908 hybrid contribution -0.524 0.518 0.358 0.819 sum 0.061 4.219 1.468 4.468 Atomic orbital electron populations 1.69686 1.09526 1.33752 1.22736 1.27243 0.95827 1.05214 0.91395 0.84834 0.79325 0.73855 0.80172 1.17728 1.18027 1.17308 1.20433 0.98801 0.91592 1.28427 0.88098 1.17837 0.92959 0.86231 0.90951 1.20572 1.03101 0.97615 1.08223 1.20519 0.96498 0.89020 0.94105 1.19448 1.01416 0.87966 1.17178 1.98197 1.75060 1.42925 1.90558 1.23673 0.98139 0.87671 0.98626 1.75024 1.04154 1.21533 1.14825 1.85211 1.38597 1.14524 1.52108 1.74484 1.20851 0.94026 1.18299 1.24722 0.94212 0.98901 0.99663 0.87140 0.84677 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -29.62 10.99 21.91 0.24 -29.38 14 2 C 0.03 1.15 5.13 85.41 0.44 1.59 14 3 Si 1.00 28.60 29.60 68.60 2.03 30.63 14 4 H -0.25 -7.36 7.11 99.48 0.71 -6.66 14 5 H -0.26 -7.00 7.11 99.48 0.71 -6.30 14 6 H -0.25 -6.67 7.11 99.48 0.71 -5.96 14 7 C -0.37 -16.40 9.05 23.19 0.21 -16.19 14 8 H 0.10 4.38 7.91 -2.91 -0.02 4.36 14 9 C 0.13 6.12 5.69 -20.14 -0.11 6.00 14 10 C -0.27 -12.45 8.63 22.79 0.20 -12.25 14 11 C 0.02 0.87 9.66 22.17 0.21 1.08 14 12 C -0.23 -10.47 6.53 23.94 0.16 -10.31 14 13 Cl -0.10 -3.87 29.00 -2.72 -0.08 -3.95 14 14 C 0.07 3.52 7.79 43.78 0.34 3.86 14 15 N -0.42 -20.04 12.30 -55.35 -0.68 -20.72 14 16 O 0.31 14.16 11.67 139.19 1.63 15.79 14 17 N -0.35 -16.88 12.24 -55.98 -0.69 -17.57 14 18 C -0.02 -0.81 7.72 44.35 0.34 -0.47 14 19 H 0.32 10.74 8.29 -92.71 -0.77 9.97 14 20 H 0.14 5.99 6.14 -2.91 -0.02 5.97 14 21 H 0.14 5.03 8.06 -2.91 -0.02 5.00 14 Total: -1.00 -51.01 217.71 5.52 -45.49 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.29 Total: 6.39 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 1.78 Total: -26.68 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -1.13 Total: -67.67 kcal Atomic # 8 Polarization: 14.16 SS G_CDS: 1.63 Total: 15.79 kcal Atomic # 14 Polarization: 28.60 SS G_CDS: 2.03 Total: 30.63 kcal Atomic # 17 Polarization: -3.87 SS G_CDS: -0.08 Total: -3.95 kcal Total: -51.01 5.52 -45.49 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261274577.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.705 kcal (2) G-P(sol) polarization free energy of solvation -51.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds