Wall clock time and date at job start Mon Mar 30 2020 02:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46751 * 2 1 4 4 C 1.50699 * 109.46994 * 240.00436 * 2 1 3 5 5 H 1.07999 * 119.99976 * 239.99703 * 4 2 1 6 6 C 1.37884 * 119.99931 * 59.99937 * 4 2 1 7 7 N 1.31509 * 119.99901 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99800 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47388 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47066 * 120.00098 * 8 6 4 11 11 H 1.48506 * 109.47009 * 239.99968 * 8 6 4 12 12 N 1.46894 * 109.47302 * 120.00348 * 2 1 3 13 13 C 1.48673 * 111.00083 * 164.44106 * 12 2 1 14 14 C 1.54982 * 103.32175 * 159.05393 * 13 12 2 15 15 C 1.54753 * 102.93935 * 322.92842 * 14 13 12 16 16 C 1.47297 * 111.00063 * 281.65758 * 12 2 1 17 17 C 1.53708 * 110.39656 * 335.23179 * 16 12 2 18 18 C 1.55022 * 104.04964 * 97.32171 * 17 16 12 19 19 C 1.54941 * 102.82282 * 37.46024 * 18 17 16 20 20 C 1.53300 * 110.64273 * 93.72456 * 16 12 2 21 21 H 1.09001 * 109.46898 * 161.70973 * 1 2 3 22 22 H 1.09004 * 109.46960 * 281.70681 * 1 2 3 23 23 H 1.08997 * 109.47321 * 41.70434 * 1 2 3 24 24 H 0.97001 * 119.99770 * 180.02562 * 7 6 4 25 25 H 1.09007 * 110.65112 * 40.59334 * 13 12 2 26 26 H 1.09007 * 110.79431 * 277.57652 * 13 12 2 27 27 H 1.09003 * 110.72412 * 204.57327 * 14 13 12 28 28 H 1.08997 * 110.87422 * 81.36288 * 14 13 12 29 29 H 1.09001 * 110.35628 * 263.04814 * 15 14 13 30 30 H 1.08992 * 110.35654 * 140.75292 * 15 14 13 31 31 H 1.08995 * 110.51370 * 215.96554 * 17 16 12 32 32 H 1.09001 * 110.51372 * 338.68674 * 17 16 12 33 33 H 1.08993 * 110.74506 * 279.12719 * 18 17 16 34 34 H 1.09007 * 110.74290 * 155.79267 * 18 17 16 35 35 H 1.08998 * 110.48840 * 203.69266 * 19 18 17 36 36 H 1.09005 * 110.48477 * 81.05290 * 19 18 17 37 37 H 1.09003 * 110.07259 * 358.65851 * 20 16 12 38 38 H 1.08994 * 110.07981 * 120.14190 * 20 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3224 -1.1192 -4.0080 9 1 3.1483 -2.2853 -3.6040 10 1 1.1677 -1.5862 -4.8167 11 1 3.1472 -0.1853 -4.8161 12 7 2.0197 -0.6925 1.1993 13 6 3.4580 -1.0432 1.0622 14 6 3.9196 -1.2373 2.5288 15 6 3.1308 -0.1436 3.2881 16 6 1.9337 0.1786 2.3840 17 6 1.9633 1.6571 1.9650 18 6 0.4695 2.0709 1.9388 19 6 -0.1213 1.3027 3.1477 20 6 0.6157 -0.0542 3.1315 21 1 -0.3633 -0.9758 -0.3225 22 1 -0.3633 0.2085 1.0063 23 1 -0.3634 0.7672 -0.6837 24 1 0.7080 1.1611 -3.4843 25 1 4.0088 -0.2295 0.5902 26 1 3.5788 -1.9667 0.4958 27 1 4.9932 -1.0720 2.6204 28 1 3.6511 -2.2291 2.8925 29 1 3.7499 0.7426 3.4275 30 1 2.7877 -0.5228 4.2506 31 1 2.5113 2.2506 2.6968 32 1 2.4068 1.7648 0.9751 33 1 -0.0033 1.7515 1.0101 34 1 0.3645 3.1471 2.0765 35 1 -1.1937 1.1559 3.0193 36 1 0.0832 1.8366 4.0758 37 1 0.0159 -0.7995 2.6090 38 1 0.8167 -0.3840 4.1507 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306296257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:51 Heat of formation + Delta-G solvation = 2.251215 kcal Electronic energy + Delta-G solvation = -16910.973673 eV Core-core repulsion = 14559.958138 eV Total energy + Delta-G solvation = -2351.015535 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.45364 -36.35795 -35.72635 -33.09608 -29.68423 -29.58651 -29.29754 -27.23989 -24.30766 -22.81545 -22.04322 -21.05860 -19.05219 -18.34892 -17.17916 -17.01054 -16.17080 -15.61362 -15.03507 -14.78950 -14.25861 -14.05302 -13.78495 -13.30832 -13.01308 -12.94969 -12.71644 -12.68215 -12.31556 -12.25867 -11.88077 -11.83604 -11.69012 -11.57212 -11.44229 -11.27100 -11.10840 -11.02459 -10.48361 -10.39655 -8.80458 -8.10670 -6.18401 1.36646 1.38941 1.49855 2.41478 3.19258 3.42377 3.74832 3.83081 4.05072 4.20347 4.32726 4.34414 4.64310 4.70242 4.72721 4.81985 4.89193 4.91690 4.98655 5.01453 5.11496 5.13155 5.16954 5.19738 5.24631 5.31896 5.36137 5.39666 5.46825 5.54875 5.63860 5.70849 5.85421 5.96316 6.24578 6.46792 6.86580 6.99864 7.49340 8.96509 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032072 B = 0.010762 C = 0.008844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.834345 B = 2601.135384 C = 3165.388464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.194 3.806 3 H 0.009 0.991 4 C -0.527 4.527 5 H 0.053 0.947 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.951 3.049 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.513 5.513 13 C 0.051 3.949 14 C -0.118 4.118 15 C -0.113 4.113 16 C 0.082 3.918 17 C -0.149 4.149 18 C -0.146 4.146 19 C -0.113 4.113 20 C -0.103 4.103 21 H 0.006 0.994 22 H 0.061 0.939 23 H 0.040 0.960 24 H 0.259 0.741 25 H 0.017 0.983 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 0.240 12.134 12.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 H 0.026 0.974 4 C -0.566 4.566 5 H 0.072 0.928 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.237 5.237 13 C -0.077 4.077 14 C -0.156 4.156 15 C -0.151 4.151 16 C -0.008 4.008 17 C -0.187 4.187 18 C -0.183 4.183 19 C -0.151 4.151 20 C -0.141 4.141 21 H 0.025 0.975 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.764 -0.128 12.052 12.181 hybrid contribution 0.611 0.423 -1.763 1.913 sum 2.375 0.296 10.289 10.564 Atomic orbital electron populations 1.21823 0.97837 0.98248 0.98965 1.19521 0.92527 0.92747 0.86483 0.97399 1.21694 1.30941 1.12192 0.91752 0.92845 1.25640 0.95534 0.95807 1.01621 1.70073 1.37900 1.24128 1.23654 0.85604 0.78084 0.78702 0.79829 1.19423 1.20804 1.20710 1.64789 1.16286 1.38875 1.03721 1.22927 0.89244 0.98854 0.96723 1.22542 0.99834 0.99602 0.93612 1.22548 0.95338 0.98780 0.98421 1.22120 0.96434 0.90554 0.91730 1.23030 0.97745 0.97144 1.00824 1.22975 0.95733 0.99626 1.00001 1.22339 0.99223 0.95614 0.97916 1.22234 0.94888 0.97394 0.99563 0.97477 0.92048 0.94153 0.93225 0.96421 0.92512 0.90101 0.90683 0.91051 0.89372 0.90658 0.93100 0.91339 0.91748 0.91769 0.89968 0.92713 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.57 6.92 71.98 0.50 -5.07 16 2 C 0.19 9.89 1.49 44.17 0.07 9.96 16 3 H 0.01 0.49 4.43 -2.39 -0.01 0.48 16 4 C -0.53 -29.73 7.84 25.60 0.20 -29.53 16 5 H 0.05 3.02 6.10 -2.91 -0.02 3.01 16 6 C 0.01 0.72 5.30 84.66 0.45 1.16 16 7 N -0.92 -53.84 11.61 21.45 0.25 -53.59 16 8 Si 0.95 44.97 29.54 68.60 2.03 47.00 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 N -0.51 -22.10 4.67 -813.72 -3.80 -25.90 16 13 C 0.05 2.04 5.29 86.64 0.46 2.50 16 14 C -0.12 -3.47 7.07 31.87 0.23 -3.25 16 15 C -0.11 -3.15 6.21 31.34 0.19 -2.95 16 16 C 0.08 2.83 0.76 3.93 0.00 2.83 16 17 C -0.15 -5.36 5.27 31.52 0.17 -5.19 16 18 C -0.15 -5.02 6.11 31.95 0.20 -4.82 16 19 C -0.11 -3.19 6.24 31.74 0.20 -2.99 16 20 C -0.10 -3.16 5.47 31.18 0.17 -2.99 16 21 H 0.01 0.33 8.00 -2.39 -0.02 0.31 16 22 H 0.06 2.67 3.12 -2.39 -0.01 2.66 16 23 H 0.04 2.18 6.55 -2.39 -0.02 2.17 16 24 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.02 0.77 7.96 -2.38 -0.02 0.75 16 26 H 0.06 2.41 7.02 -2.38 -0.02 2.39 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.07 1.83 7.33 -2.39 -0.02 1.81 16 30 H 0.09 2.04 7.12 -2.39 -0.02 2.02 16 31 H 0.07 2.30 7.46 -2.39 -0.02 2.28 16 32 H 0.05 2.25 5.23 -2.39 -0.01 2.24 16 33 H 0.07 2.82 4.10 -2.39 -0.01 2.81 16 34 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.05 1.94 6.91 -2.39 -0.02 1.92 16 38 H 0.08 2.06 7.10 -2.39 -0.02 2.04 16 Total: -1.00 -61.43 268.56 2.34 -59.09 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.04 Total: 13.76 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 2.83 Total: -40.36 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -3.55 Total: -79.49 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -61.43 2.34 -59.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306296257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.339 kcal (2) G-P(sol) polarization free energy of solvation -61.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds