Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47357 * 2 1 4 4 C 1.50695 * 109.47008 * 239.99746 * 2 1 3 5 5 H 1.08005 * 120.00608 * 239.99708 * 4 2 1 6 6 C 1.37883 * 119.99984 * 60.00259 * 4 2 1 7 7 N 1.31513 * 119.99556 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00032 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46973 * 90.00265 * 8 6 4 10 10 H 1.48499 * 109.47065 * 209.99879 * 8 6 4 11 11 H 1.48495 * 109.47100 * 329.99816 * 8 6 4 12 12 N 1.46907 * 109.47290 * 119.99995 * 2 1 3 13 13 C 1.48819 * 111.00021 * 300.00114 * 12 2 1 14 14 C 1.52552 * 105.66184 * 241.16016 * 13 12 2 15 15 H 1.09005 * 110.76482 * 87.13339 * 14 13 12 16 16 C 1.51521 * 116.99727 * 214.26372 * 14 13 12 17 17 C 1.53808 * 107.11180 * 178.22645 * 16 14 13 18 18 C 1.52536 * 111.59900 * 302.67874 * 17 16 14 19 19 C 1.53778 * 111.64631 * 54.10661 * 18 17 16 20 20 C 1.51718 * 107.09385 * 302.31927 * 19 18 17 21 21 H 1.08998 * 110.91013 * 304.13649 * 20 19 18 22 22 C 1.49872 * 111.29787 * 179.10818 * 12 2 1 23 23 H 1.09008 * 109.46719 * 300.00193 * 1 2 3 24 24 H 1.08993 * 109.47371 * 59.99861 * 1 2 3 25 25 H 1.08992 * 109.47121 * 180.02562 * 1 2 3 26 26 H 0.97004 * 119.99612 * 179.97438 * 7 6 4 27 27 H 1.08996 * 110.21413 * 122.11202 * 13 12 2 28 28 H 1.09005 * 110.21140 * 0.20521 * 13 12 2 29 29 H 1.09004 * 109.92866 * 58.82791 * 16 14 13 30 30 H 1.08998 * 109.93003 * 297.62921 * 16 14 13 31 31 H 1.08997 * 109.05306 * 182.13039 * 17 16 14 32 32 H 1.09006 * 109.05093 * 63.22684 * 17 16 14 33 33 H 1.09000 * 109.04323 * 174.66130 * 18 17 16 34 34 H 1.08996 * 109.04283 * 293.54819 * 18 17 16 35 35 H 1.09004 * 109.92695 * 61.71360 * 19 18 17 36 36 H 1.08997 * 109.92862 * 182.83441 * 19 18 17 37 37 H 1.08995 * 110.44043 * 28.68233 * 22 12 2 38 38 H 1.09000 * 111.24246 * 265.28430 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 1.3446 -2.1616 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6307 -1.7566 -3.7119 12 7 2.0197 -0.6925 1.1995 13 6 1.5425 -0.0177 2.4371 14 6 2.8012 0.4308 3.1730 15 1 3.1216 1.4136 2.8271 16 6 2.7594 0.4027 4.6874 17 6 4.1437 0.8503 5.1867 18 6 5.2540 -0.0375 4.6340 19 6 5.2013 -0.1226 3.0994 20 6 3.8290 -0.6529 2.7291 21 1 3.6342 -1.6057 3.2213 22 6 3.5175 -0.7352 1.2300 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 0.7087 1.1612 -3.4844 27 1 0.9755 -0.7163 3.0522 28 1 0.9276 0.8455 2.1822 29 1 2.5485 -0.6088 5.0346 30 1 1.9939 1.0883 5.0507 31 1 4.1608 0.8052 6.2756 32 1 4.3202 1.8788 4.8716 33 1 6.2189 0.3709 4.9346 34 1 5.1483 -1.0396 5.0496 35 1 5.3461 0.8676 2.6673 36 1 5.9735 -0.8019 2.7383 37 1 3.9336 0.1230 0.7025 38 1 3.8947 -1.6672 0.8089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306403071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = -14.469525 kcal Electronic energy + Delta-G solvation = -16145.425747 eV Core-core repulsion = 13793.685146 eV Total energy + Delta-G solvation = -2351.740601 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60053 -35.96612 -33.10849 -31.31652 -30.64536 -27.63016 -26.93931 -24.81649 -22.98589 -20.91126 -20.58972 -19.79332 -18.92639 -16.29694 -15.21496 -14.62543 -14.60327 -14.25493 -13.99500 -13.55292 -13.00743 -12.58434 -12.29813 -12.02820 -11.77564 -11.69888 -11.43540 -10.99769 -10.83013 -10.72871 -10.59986 -10.52006 -10.30111 -10.22350 -10.03462 -9.73855 -9.62901 -9.42407 -8.85834 -8.37891 -7.07651 -5.96579 -4.00626 3.33489 3.39505 3.43134 4.44653 4.72822 4.83562 4.89467 5.08889 5.31861 5.35505 5.46066 5.55665 5.61891 5.66788 5.78414 5.93176 6.06596 6.09319 6.12430 6.21006 6.26602 6.31793 6.38876 6.49134 6.54881 6.69624 6.80541 6.88196 6.93022 7.13322 7.13901 7.57455 7.70996 7.89112 8.22115 8.39704 8.64470 9.06688 9.64408 11.10329 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.043785 B = 0.007256 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.328988 B = 3857.873713 C = 4276.341643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.207 3.793 3 H -0.004 1.004 4 C -0.500 4.500 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.527 5.527 13 C 0.049 3.951 14 C -0.115 4.115 15 H 0.067 0.933 16 C -0.103 4.103 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.107 4.107 20 C -0.104 4.104 21 H 0.077 0.923 22 C 0.068 3.932 23 H 0.007 0.993 24 H 0.084 0.916 25 H 0.033 0.967 26 H 0.259 0.741 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.627 -0.175 12.662 13.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.101 3.899 3 H 0.014 0.986 4 C -0.538 4.538 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.251 5.251 13 C -0.079 4.079 14 C -0.135 4.135 15 H 0.086 0.914 16 C -0.141 4.141 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.145 4.145 20 C -0.123 4.123 21 H 0.095 0.905 22 C -0.059 4.059 23 H 0.026 0.974 24 H 0.102 0.898 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.336 -0.559 12.470 13.575 hybrid contribution 0.547 0.465 -0.911 1.160 sum 5.884 -0.094 11.559 12.971 Atomic orbital electron populations 1.21845 0.97811 0.99584 0.99810 1.19385 0.92283 0.91848 0.86406 0.98600 1.21143 1.30729 1.12137 0.89811 0.92098 1.24939 0.95312 0.95095 0.99000 1.69899 1.37169 1.23125 1.23289 0.86532 0.79228 0.79301 0.82545 1.20687 1.21385 1.19962 1.64560 1.06934 1.51615 1.02030 1.22572 0.95519 0.97272 0.92575 1.22205 0.97363 0.98946 0.94940 0.91434 1.21311 0.96297 1.01234 0.95258 1.21535 0.94913 0.99509 0.99467 1.21516 0.97947 0.99870 0.95985 1.21377 0.97049 1.01029 0.95036 1.22220 0.94357 0.98231 0.97449 0.90476 1.22689 0.89484 1.00859 0.92893 0.97357 0.89754 0.94788 0.93075 0.92016 0.92882 0.91857 0.92268 0.92588 0.92478 0.92626 0.92403 0.92002 0.92034 0.93709 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.84 37.16 0.33 -3.02 16 2 C 0.21 5.40 1.73 -68.87 -0.12 5.28 16 3 H 0.00 -0.10 8.13 -51.93 -0.42 -0.52 16 4 C -0.50 -14.03 8.09 -34.44 -0.28 -14.31 16 5 H 0.06 1.71 7.27 -52.48 -0.38 1.33 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -26.01 11.32 55.43 0.63 -25.38 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.53 -11.76 5.06 -223.85 -1.13 -12.89 16 13 C 0.05 0.92 5.93 -2.99 -0.02 0.90 16 14 C -0.12 -1.82 2.34 -90.10 -0.21 -2.03 16 15 H 0.07 1.14 7.93 -51.93 -0.41 0.72 16 16 C -0.10 -1.31 5.68 -27.06 -0.15 -1.46 16 17 C -0.12 -1.31 5.84 -26.55 -0.15 -1.46 16 18 C -0.12 -1.30 5.84 -26.56 -0.16 -1.46 16 19 C -0.11 -1.42 5.68 -26.98 -0.15 -1.58 16 20 C -0.10 -1.64 2.49 -89.60 -0.22 -1.86 16 21 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 22 C 0.07 1.37 5.37 -1.99 -0.01 1.36 16 23 H 0.01 0.17 6.41 -51.92 -0.33 -0.16 16 24 H 0.08 2.32 6.07 -51.93 -0.32 2.00 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 28 H 0.05 1.05 6.22 -51.93 -0.32 0.73 16 29 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.85 7.98 -51.93 -0.41 0.44 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.97 7.86 -51.93 -0.41 0.56 16 38 H 0.07 1.41 7.96 -51.93 -0.41 0.99 16 LS Contribution 285.69 15.07 4.31 4.31 Total: -1.00 -28.66 285.69 -9.24 -37.90 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.77 Total: -2.48 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.24 Total: -18.13 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.51 Total: -38.27 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.66 -9.24 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306403071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.429 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds