Wall clock time and date at job start Mon Mar 30 2020 03:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36940 * 120.00349 * 2 1 4 4 H 1.07996 * 120.00380 * 200.96325 * 3 2 1 5 5 C 1.38816 * 119.99317 * 21.24295 * 3 2 1 6 6 N 1.31619 * 120.00270 * 9.03278 * 5 3 2 7 7 Si 1.86801 * 119.99628 * 189.03363 * 5 3 2 8 8 H 1.48500 * 109.47359 * 89.99779 * 7 5 3 9 9 H 1.48499 * 109.47049 * 210.00201 * 7 5 3 10 10 H 1.48512 * 109.47052 * 329.99582 * 7 5 3 11 11 C 1.46500 * 120.00236 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47466 * 265.04965 * 11 2 1 13 13 H 1.09008 * 109.46753 * 305.89812 * 12 11 2 14 14 C 1.52993 * 109.47584 * 65.89534 * 12 11 2 15 15 C 1.52999 * 109.47406 * 119.99874 * 14 12 11 16 16 C 1.53005 * 109.46462 * 60.00673 * 15 14 12 17 17 C 1.52998 * 109.46903 * 299.99392 * 16 15 14 18 18 C 1.52997 * 109.47422 * 185.90084 * 12 11 2 19 19 C 1.53005 * 109.47040 * 299.99768 * 18 12 11 20 20 C 1.52992 * 109.47391 * 300.00673 * 15 14 12 21 21 H 1.09007 * 109.47026 * 36.05184 * 1 2 3 22 22 H 1.09003 * 109.46984 * 156.04887 * 1 2 3 23 23 H 1.08998 * 109.47256 * 276.04996 * 1 2 3 24 24 H 0.96998 * 119.99707 * 180.02562 * 6 5 3 25 25 H 1.09002 * 109.47325 * 25.04729 * 11 2 1 26 26 H 1.08998 * 109.47488 * 145.04642 * 11 2 1 27 27 H 1.08998 * 109.47647 * 240.00697 * 14 12 11 28 28 H 1.09011 * 109.46906 * 0.02562 * 14 12 11 29 29 H 1.09001 * 109.47453 * 179.97438 * 15 14 12 30 30 H 1.08992 * 109.47461 * 60.00218 * 16 15 14 31 31 H 1.09006 * 109.47010 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.47302 * 239.99889 * 17 16 15 33 33 H 1.09008 * 109.46651 * 120.00404 * 17 16 15 34 34 H 1.08999 * 109.47247 * 59.99737 * 18 12 11 35 35 H 1.09000 * 109.46952 * 180.02562 * 19 18 12 36 36 H 1.09002 * 109.46844 * 59.99726 * 19 18 12 37 37 H 1.08999 * 109.47208 * 179.97438 * 20 15 14 38 38 H 1.09003 * 109.47470 * 299.99886 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1761 1.2169 -0.3346 5 6 1.5263 2.3472 0.4356 6 7 0.3452 2.2833 1.0128 7 14 2.3638 4.0006 0.2025 8 1 1.9681 4.5756 -1.1082 9 1 1.9521 4.9219 1.2919 10 1 3.8373 3.8185 0.2387 11 6 2.1975 -1.2687 0.0006 12 6 2.5604 -1.6475 1.4378 13 1 3.0957 -0.8220 1.9070 14 6 1.2823 -1.9402 2.2263 15 6 1.3197 -3.3801 2.7422 16 6 2.5347 -3.5637 3.6539 17 6 3.8128 -3.2711 2.8653 18 6 3.4499 -2.8923 1.4281 19 6 2.6985 -4.0510 0.7695 20 6 1.4204 -4.3436 1.5581 21 1 -0.3633 0.8309 -0.6048 22 1 -0.3633 -0.9392 -0.4172 23 1 -0.3634 0.1083 1.0219 24 1 -0.0905 3.0949 1.3168 25 1 1.5729 -2.0491 -0.4342 26 1 3.1086 -1.1625 -0.5882 27 1 1.2106 -1.2537 3.0699 28 1 0.4167 -1.8097 1.5767 29 1 0.4094 -3.5885 3.3044 30 1 2.4630 -2.8773 4.4975 31 1 2.5617 -4.5897 4.0211 32 1 4.4465 -4.1579 2.8585 33 1 4.3482 -2.4456 3.3345 34 1 4.3605 -2.6838 0.8664 35 1 3.3321 -4.9379 0.7630 36 1 2.4400 -3.7811 -0.2544 37 1 1.4474 -5.3694 1.9256 38 1 0.5548 -4.2128 0.9085 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306611091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:39 Heat of formation + Delta-G solvation = -4.172680 kcal Electronic energy + Delta-G solvation = -16519.784872 eV Core-core repulsion = 14168.490775 eV Total energy + Delta-G solvation = -2351.294096 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.08755 -35.46079 -31.97476 -30.94775 -30.53766 -29.64059 -26.06871 -25.15062 -22.27226 -21.77227 -21.36299 -20.00921 -16.61115 -16.05154 -15.88463 -15.44114 -15.01101 -14.38106 -13.45019 -13.07617 -12.75504 -12.15717 -11.89041 -11.78420 -11.76305 -11.57472 -11.54328 -11.31047 -11.04152 -10.77994 -10.71320 -10.45677 -10.19177 -10.02719 -9.87178 -9.76616 -9.34825 -9.23093 -9.17883 -8.42556 -6.63050 -5.61808 -3.06086 3.42844 3.48876 3.50134 4.57581 4.94072 4.98494 5.04986 5.50236 5.58068 5.59207 5.68425 5.73097 5.75669 5.77333 5.91639 5.94407 5.99795 6.09155 6.15521 6.21683 6.36393 6.45237 6.52969 6.56162 6.68928 6.71668 6.76239 6.83951 6.95991 7.02780 7.21020 7.29953 7.52869 7.83801 7.91718 8.50483 9.35471 9.99633 10.48103 11.42801 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.041122 B = 0.008025 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.729573 B = 3488.472872 C = 3593.567272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.603 5.603 3 C -0.245 4.245 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.912 5.912 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.158 3.842 12 C -0.099 4.099 13 H 0.068 0.932 14 C -0.095 4.095 15 C -0.089 4.089 16 C -0.110 4.110 17 C -0.111 4.111 18 C -0.082 4.082 19 C -0.112 4.112 20 C -0.108 4.108 21 H 0.041 0.959 22 H -0.008 1.008 23 H 0.030 0.970 24 H 0.250 0.750 25 H 0.039 0.961 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -12.257 2.336 12.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.326 5.326 3 C -0.375 4.375 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.558 5.558 7 Si 0.733 3.267 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.031 3.969 12 C -0.120 4.120 13 H 0.086 0.914 14 C -0.132 4.132 15 C -0.107 4.107 16 C -0.147 4.147 17 C -0.148 4.148 18 C -0.101 4.101 19 C -0.149 4.149 20 C -0.146 4.146 21 H 0.060 0.940 22 H 0.010 0.990 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.106 -12.106 2.381 12.723 hybrid contribution 0.407 1.035 0.097 1.116 sum 3.514 -11.072 2.478 11.877 Atomic orbital electron populations 1.20823 0.82667 0.94799 0.99425 1.43964 1.01849 1.00733 1.86060 1.19220 0.97015 0.85419 1.35872 0.91516 1.24993 0.97475 0.98292 0.99170 1.70070 1.15726 1.26530 1.43464 0.86275 0.78856 0.84350 0.77189 1.21668 1.21853 1.20646 1.20943 0.95048 0.87901 0.92969 1.21771 0.95206 0.95168 0.99843 0.91395 1.21470 0.98805 0.93372 0.99595 1.21093 0.97128 0.96720 0.95774 1.21501 0.95149 1.00225 0.97852 1.21511 0.96897 1.00305 0.96112 1.21071 0.98189 0.95725 0.95133 1.21535 0.96426 0.97559 0.99386 1.21478 0.98008 0.98000 0.97117 0.94011 0.98966 0.95158 0.93979 0.94269 0.94770 0.92882 0.91475 0.92223 0.92463 0.92991 0.92966 0.92381 0.91928 0.93075 0.91806 0.93026 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.23 7.42 59.84 0.44 4.67 16 2 N -0.60 -15.43 2.78 -181.12 -0.50 -15.93 16 3 C -0.25 -6.87 9.69 -15.06 -0.15 -7.01 16 4 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 5 C 0.00 -0.06 5.19 -17.43 -0.09 -0.15 16 6 N -0.91 -26.95 10.39 55.49 0.58 -26.37 16 7 Si 0.90 22.34 29.56 -169.99 -5.03 17.31 16 8 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 C 0.16 3.33 4.44 -4.04 -0.02 3.31 16 12 C -0.10 -1.88 2.40 -90.63 -0.22 -2.09 16 13 H 0.07 1.50 8.14 -51.92 -0.42 1.07 16 14 C -0.09 -1.77 5.11 -26.73 -0.14 -1.90 16 15 C -0.09 -1.33 3.19 -90.62 -0.29 -1.62 16 16 C -0.11 -1.51 5.71 -26.73 -0.15 -1.66 16 17 C -0.11 -1.54 5.71 -26.73 -0.15 -1.69 16 18 C -0.08 -1.26 2.72 -90.62 -0.25 -1.51 16 19 C -0.11 -1.54 5.36 -26.73 -0.14 -1.69 16 20 C -0.11 -1.48 5.71 -26.73 -0.15 -1.63 16 21 H 0.04 1.14 7.17 -51.93 -0.37 0.77 16 22 H -0.01 -0.18 7.77 -51.93 -0.40 -0.59 16 23 H 0.03 0.82 6.96 -51.93 -0.36 0.46 16 24 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.04 0.77 6.40 -51.93 -0.33 0.44 16 26 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.36 5.58 -51.92 -0.29 1.07 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 280.95 15.07 4.23 4.23 Total: -1.00 -29.06 280.95 -8.74 -37.79 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -6.72 Total: -4.06 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -1.30 Total: -12.97 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.07 Total: -42.30 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.06 -8.74 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306611091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.619 kcal (2) G-P(sol) polarization free energy of solvation -29.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds