Wall clock time and date at job start Mon Mar 30 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 H 1.09006 * 109.46781 * 34.99707 * 13 12 2 15 15 C 1.52999 * 109.47271 * 275.00382 * 13 12 2 16 16 C 1.53007 * 109.46954 * 239.99726 * 15 13 12 17 17 C 1.52999 * 109.46788 * 299.99906 * 16 15 13 18 18 C 1.52999 * 109.47297 * 60.00303 * 17 16 15 19 19 C 1.52994 * 109.47223 * 154.99831 * 13 12 2 20 20 C 1.53001 * 109.47208 * 60.00277 * 19 13 12 21 21 C 1.53000 * 109.47092 * 59.99672 * 16 15 13 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 26 26 H 1.00902 * 110.99927 * 151.04624 * 12 2 1 27 27 H 1.09004 * 109.46964 * 359.97438 * 15 13 12 28 28 H 1.08993 * 109.47526 * 119.99741 * 15 13 12 29 29 H 1.08998 * 109.47224 * 179.97438 * 16 15 13 30 30 H 1.09005 * 109.46558 * 179.97438 * 17 16 15 31 31 H 1.08993 * 109.47175 * 299.99668 * 17 16 15 32 32 H 1.09006 * 109.46667 * 239.99926 * 18 17 16 33 33 H 1.08993 * 109.47394 * 119.99919 * 18 17 16 34 34 H 1.08998 * 109.47177 * 299.99898 * 19 13 12 35 35 H 1.08995 * 109.47022 * 300.00128 * 20 19 13 36 36 H 1.09001 * 109.47216 * 179.97438 * 20 19 13 37 37 H 1.09004 * 109.47322 * 60.00154 * 21 16 15 38 38 H 1.08995 * 109.47495 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.2576 0.9330 2.2907 15 6 3.4110 0.9810 2.3224 16 6 4.1914 0.6843 3.6046 17 6 3.3709 1.1318 4.8160 18 6 2.0423 0.3735 4.8405 19 6 1.9770 -0.5796 3.6454 20 6 3.1348 -1.5767 3.7243 21 6 4.4634 -0.8183 3.6999 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7089 1.1612 -3.4844 26 1 2.9173 -1.1204 1.0288 27 1 3.9957 0.6619 1.4595 28 1 3.2172 2.0514 2.2545 29 1 5.1381 1.2242 3.5870 30 1 3.9267 0.9200 5.7295 31 1 3.1771 2.2022 4.7481 32 1 1.2175 1.0839 4.7843 33 1 1.9672 -0.1980 5.7656 34 1 1.0304 -1.1198 3.6629 35 1 3.0882 -2.2556 2.8730 36 1 3.0599 -2.1479 4.6497 37 1 5.0479 -1.1372 2.8368 38 1 5.0197 -1.0297 4.6130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307082632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:39 Heat of formation + Delta-G solvation = -43.121727 kcal Electronic energy + Delta-G solvation = -16286.373389 eV Core-core repulsion = 13933.390335 eV Total energy + Delta-G solvation = -2352.983054 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.38828 -37.20511 -34.40235 -32.20608 -31.65072 -31.29071 -28.22816 -27.19995 -23.41462 -23.34512 -22.48988 -21.51232 -18.75233 -17.39013 -17.30748 -16.90633 -16.48980 -16.17658 -15.27826 -14.73648 -14.32559 -13.69270 -13.56745 -13.12814 -12.95811 -12.87144 -12.84316 -12.82534 -12.79583 -12.64875 -12.58555 -12.25859 -12.20051 -11.90049 -11.47704 -10.94187 -10.83044 -10.65591 -10.55729 -10.52820 -8.90605 -8.13590 -6.27755 1.40624 1.41630 1.51731 2.40606 3.14633 3.57406 3.74915 3.78703 4.00401 4.40076 4.41362 4.46045 4.49700 4.55054 4.58100 4.64031 4.68259 4.82030 4.83394 4.92662 5.08308 5.13586 5.18653 5.21636 5.23676 5.37132 5.46161 5.49595 5.52220 5.57891 5.61575 5.65036 5.72735 5.88864 6.22766 6.53047 6.83564 7.05368 7.42986 8.92150 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.043656 B = 0.007260 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.220148 B = 3855.663800 C = 4032.201796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.219 3.781 3 H -0.033 1.033 4 C -0.536 4.536 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.679 5.679 13 C 0.094 3.906 14 H 0.044 0.956 15 C -0.137 4.137 16 C -0.080 4.080 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.070 4.070 20 C -0.107 4.107 21 C -0.110 4.110 22 H 0.026 0.974 23 H 0.056 0.944 24 H 0.017 0.983 25 H 0.262 0.738 26 H 0.330 0.670 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.597 -1.225 14.169 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 H -0.016 1.016 4 C -0.575 4.575 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.309 5.309 13 C -0.017 4.017 14 H 0.062 0.938 15 C -0.176 4.176 16 C -0.099 4.099 17 C -0.145 4.145 18 C -0.148 4.148 19 C -0.089 4.089 20 C -0.145 4.145 21 C -0.147 4.147 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.036 0.964 25 H 0.071 0.929 26 H 0.149 0.851 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.887 -1.361 14.190 15.069 hybrid contribution 0.688 0.471 -1.610 1.813 sum 5.575 -0.890 12.580 13.788 Atomic orbital electron populations 1.21548 0.98139 0.98668 0.98720 1.18835 0.92310 0.90729 0.87096 1.01590 1.21601 1.31562 1.12569 0.91744 0.92456 1.25741 0.95204 0.95666 1.02051 1.70029 1.37572 1.24124 1.24101 0.85501 0.78868 0.78223 0.78695 1.20092 1.20860 1.19199 1.60719 1.32163 1.33005 1.05037 1.21537 0.95294 0.93009 0.91823 0.93777 1.22292 0.97401 0.99703 0.98210 1.21009 0.98127 0.96798 0.93933 1.21521 0.95888 0.99430 0.97675 1.21537 0.97599 0.98041 0.97636 1.20952 0.98707 0.96204 0.93027 1.21436 0.94017 0.97315 1.01731 1.21527 0.97115 0.94152 1.01919 0.95442 0.92559 0.96378 0.92882 0.85148 0.93931 0.93446 0.90855 0.90094 0.92323 0.92700 0.90183 0.92237 0.92972 0.90776 0.93147 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.86 9.17 71.98 0.66 -5.20 16 2 C 0.22 11.54 2.41 44.17 0.11 11.65 16 3 H -0.03 -1.96 7.65 -2.39 -0.02 -1.98 16 4 C -0.54 -30.25 8.59 25.60 0.22 -30.03 16 5 H 0.06 3.17 7.62 -2.91 -0.02 3.14 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -54.13 11.32 21.45 0.24 -53.89 16 8 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 9 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 N -0.68 -29.68 5.50 -473.33 -2.60 -32.28 16 13 C 0.09 3.45 2.24 44.91 0.10 3.55 16 14 H 0.04 1.80 7.11 -2.38 -0.02 1.78 16 15 C -0.14 -4.61 5.08 30.60 0.16 -4.46 16 16 C -0.08 -2.02 3.20 -10.79 -0.03 -2.06 16 17 C -0.11 -2.32 5.71 30.59 0.17 -2.15 16 18 C -0.11 -2.56 5.71 30.59 0.17 -2.39 16 19 C -0.07 -2.05 2.91 -10.79 -0.03 -2.08 16 20 C -0.11 -2.80 5.44 30.60 0.17 -2.64 16 21 C -0.11 -2.62 5.71 30.60 0.17 -2.44 16 22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 24 H 0.02 0.84 7.43 -2.38 -0.02 0.82 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.33 14.31 6.92 -89.69 -0.62 13.69 16 27 H 0.04 1.61 7.52 -2.38 -0.02 1.60 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.56 7.21 -2.39 -0.02 1.54 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -60.31 284.53 2.37 -57.94 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.39 Total: 19.05 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 2.32 Total: -37.09 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.36 Total: -86.17 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -60.31 2.37 -57.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307082632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.819 kcal (2) G-P(sol) polarization free energy of solvation -60.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds