Wall clock time and date at job start Mon Mar 30 2020 02:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47328 * 2 1 4 4 N 1.46498 * 109.46983 * 120.00234 * 2 1 3 5 5 C 1.36933 * 120.00020 * 274.99483 * 4 2 1 6 6 H 1.08009 * 119.99974 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00410 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99760 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00313 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46991 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47307 * 119.99977 * 9 7 5 12 12 H 1.48501 * 109.47018 * 239.99928 * 9 7 5 13 13 C 1.52997 * 109.46845 * 239.99760 * 2 1 3 14 14 H 1.08996 * 109.47653 * 304.18756 * 13 2 1 15 15 C 1.53003 * 109.47037 * 64.18495 * 13 2 1 16 16 C 1.53006 * 109.47111 * 119.99638 * 15 13 2 17 17 C 1.52992 * 109.46968 * 300.00068 * 16 15 13 18 18 C 1.53001 * 109.47307 * 60.00413 * 17 16 15 19 19 C 1.52998 * 109.47023 * 359.97438 * 18 17 16 20 20 C 1.53005 * 109.46977 * 60.00670 * 19 18 17 21 21 C 1.53003 * 109.46992 * 299.99767 * 20 19 18 22 22 H 1.09001 * 109.46966 * 174.56720 * 1 2 3 23 23 H 1.09007 * 109.46935 * 294.56177 * 1 2 3 24 24 H 1.08993 * 109.47416 * 54.55988 * 1 2 3 25 25 H 0.97006 * 120.00043 * 95.00259 * 4 2 1 26 26 H 0.96994 * 119.99709 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47463 * 239.99644 * 15 13 2 28 28 H 1.09000 * 109.46862 * 359.97438 * 15 13 2 29 29 H 1.08995 * 109.46876 * 180.02562 * 16 15 13 30 30 H 1.09004 * 109.46917 * 179.97438 * 17 16 15 31 31 H 1.08994 * 109.47405 * 299.99823 * 17 16 15 32 32 H 1.09003 * 109.46877 * 239.99862 * 18 17 16 33 33 H 1.08993 * 109.47305 * 119.99653 * 18 17 16 34 34 H 1.08999 * 109.47478 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47009 * 180.02562 * 20 19 18 36 36 H 1.08993 * 109.47293 * 59.99598 * 20 19 18 37 37 H 1.09002 * 109.47366 * 240.00428 * 21 20 19 38 38 H 1.09000 * 109.47449 * 119.99578 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6124 -0.6618 3.5090 8 7 2.9253 -1.9389 3.4499 9 14 2.7902 0.2699 5.1183 10 1 2.3754 1.6821 4.9211 11 1 1.9300 -0.3594 6.1523 12 1 4.2072 0.2278 5.5606 13 6 2.0399 -0.7213 -1.2492 14 1 1.6167 -1.7250 -1.2875 15 6 1.6177 0.0581 -2.4963 16 6 2.8626 0.4860 -3.2761 17 6 3.7381 1.3753 -2.3911 18 6 4.1605 0.5958 -1.1441 19 6 3.5659 -0.8129 -1.1976 20 6 4.0756 -1.5345 -2.4468 21 6 3.6533 -0.7550 -3.6939 22 1 -0.3633 -1.0231 -0.0973 23 1 -0.3633 0.4272 0.9347 24 1 -0.3634 0.5958 -0.8372 25 1 2.2491 -1.6319 1.1525 26 1 3.2493 -2.3959 4.2417 27 1 0.9938 -0.5754 -3.1268 28 1 1.0534 0.9420 -2.1985 29 1 2.5617 1.0417 -4.1642 30 1 4.6252 1.6797 -2.9465 31 1 3.1743 2.2593 -2.0934 32 1 3.7971 1.1096 -0.2541 33 1 5.2478 0.5304 -1.1074 34 1 3.8664 -1.3681 -0.3090 35 1 3.6516 -2.5379 -2.4852 36 1 5.1629 -1.6001 -2.4104 37 1 3.0291 -1.3884 -4.3243 38 1 4.5401 -0.4504 -4.2496 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307290395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:49 Heat of formation + Delta-G solvation = -20.809210 kcal Electronic energy + Delta-G solvation = -16471.615301 eV Core-core repulsion = 14119.599791 eV Total energy + Delta-G solvation = -2352.015510 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24725 -35.36030 -32.30879 -30.98913 -30.48509 -29.54823 -27.63961 -24.12116 -22.29709 -22.11251 -21.45138 -19.65394 -17.21687 -16.11243 -15.87582 -15.39900 -15.20911 -14.26925 -13.47033 -13.20971 -12.53376 -12.37580 -11.98354 -11.82231 -11.71283 -11.58882 -11.54321 -11.47902 -11.36698 -10.88826 -10.79969 -10.60345 -10.45991 -10.09734 -9.90972 -9.67517 -9.32740 -9.28019 -9.13292 -8.80617 -6.84871 -5.69677 -2.96370 3.46351 3.52270 3.54149 4.64681 4.89348 4.93437 5.02911 5.56609 5.60178 5.61643 5.63699 5.67633 5.72812 5.75781 5.77935 5.83544 5.92576 6.06276 6.10944 6.24156 6.26183 6.32686 6.43129 6.44140 6.53185 6.56971 6.63242 6.72314 6.80015 6.86996 6.93919 7.07239 7.15271 7.27357 7.77123 8.49676 9.60607 10.21270 10.55954 11.53316 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.038060 B = 0.008104 C = 0.007730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.503595 B = 3454.388273 C = 3621.262754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.048 0.952 4 N -0.722 5.722 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.016 4.016 8 N -0.934 5.934 9 Si 0.902 3.098 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.083 4.083 14 H 0.061 0.939 15 C -0.106 4.106 16 C -0.084 4.084 17 C -0.111 4.111 18 C -0.111 4.111 19 C -0.074 4.074 20 C -0.115 4.115 21 C -0.110 4.110 22 H 0.042 0.958 23 H 0.051 0.949 24 H 0.036 0.964 25 H 0.382 0.618 26 H 0.253 0.747 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 3.602 -13.749 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.066 0.934 4 N -0.363 5.363 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.212 4.212 8 N -0.583 5.583 9 Si 0.733 3.267 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.220 1.220 13 C -0.103 4.103 14 H 0.080 0.920 15 C -0.144 4.144 16 C -0.103 4.103 17 C -0.149 4.149 18 C -0.148 4.148 19 C -0.092 4.092 20 C -0.152 4.152 21 C -0.148 4.148 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.216 0.784 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.296 3.736 -13.604 14.111 hybrid contribution 0.122 0.096 0.986 0.999 sum 0.417 3.833 -12.618 13.194 Atomic orbital electron populations 1.22490 0.99894 1.00276 0.99982 1.20348 0.91191 0.95459 0.86222 0.93448 1.42433 1.77959 1.10639 1.05293 1.19266 1.35624 0.93744 0.87421 0.91383 1.24693 1.02669 0.95951 0.97870 1.69667 1.51441 1.08608 1.28575 0.86186 0.77223 0.78802 0.84442 1.20689 1.22055 1.22040 1.21355 0.95240 0.99016 0.94664 0.92047 1.21617 0.96350 0.99987 0.96422 1.21005 0.95801 0.95998 0.97488 1.21534 0.98650 0.97930 0.96750 1.21490 0.99350 0.96108 0.97868 1.20935 0.94733 0.96096 0.97478 1.21576 1.00043 0.98603 0.95013 1.21515 0.99155 0.96674 0.97427 0.93878 0.92985 0.94549 0.78391 0.93753 0.92806 0.91836 0.92189 0.92972 0.92493 0.90712 0.93097 0.89806 0.92515 0.92644 0.92676 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.19 37.16 0.34 -2.77 16 2 C 0.18 3.53 1.79 -67.93 -0.12 3.41 16 3 H 0.05 0.98 6.60 -51.93 -0.34 0.64 16 4 N -0.72 -17.87 4.38 -53.43 -0.23 -18.10 16 5 C -0.23 -6.32 9.93 -15.06 -0.15 -6.47 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 8 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 9 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 C -0.08 -1.41 1.84 -90.64 -0.17 -1.58 16 14 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.11 -1.49 4.91 -26.73 -0.13 -1.63 16 16 C -0.08 -1.09 3.19 -90.64 -0.29 -1.38 16 17 C -0.11 -1.52 5.71 -26.73 -0.15 -1.68 16 18 C -0.11 -1.81 5.36 -26.73 -0.14 -1.96 16 19 C -0.07 -1.26 2.51 -90.64 -0.23 -1.48 16 20 C -0.11 -1.64 5.71 -26.73 -0.15 -1.79 16 21 C -0.11 -1.38 5.71 -26.75 -0.15 -1.53 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.04 0.57 6.85 -51.93 -0.36 0.22 16 25 H 0.38 10.15 7.32 -40.82 -0.30 9.85 16 26 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.90 6.49 -51.93 -0.34 0.56 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.41 6.53 -51.93 -0.34 1.07 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.71 7.18 -51.93 -0.37 1.34 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 284.45 15.07 4.29 4.29 Total: -1.00 -28.78 284.45 -8.35 -37.13 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.66 Total: 6.04 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -1.44 Total: -19.42 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.49 Total: -45.63 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.78 -8.35 -37.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307290395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.322 kcal (2) G-P(sol) polarization free energy of solvation -28.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds