Wall clock time and date at job start Mon Mar 30 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47328 * 2 1 4 4 N 1.46498 * 109.46983 * 120.00234 * 2 1 3 5 5 C 1.36933 * 120.00020 * 274.99483 * 4 2 1 6 6 H 1.08009 * 119.99974 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00410 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99760 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00313 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46991 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47307 * 119.99977 * 9 7 5 12 12 H 1.48501 * 109.47018 * 239.99928 * 9 7 5 13 13 C 1.52997 * 109.46845 * 239.99760 * 2 1 3 14 14 H 1.08996 * 109.47653 * 304.18756 * 13 2 1 15 15 C 1.53003 * 109.47037 * 64.18495 * 13 2 1 16 16 C 1.53006 * 109.47111 * 119.99638 * 15 13 2 17 17 C 1.52992 * 109.46968 * 300.00068 * 16 15 13 18 18 C 1.53001 * 109.47307 * 60.00413 * 17 16 15 19 19 C 1.52998 * 109.47023 * 359.97438 * 18 17 16 20 20 C 1.53005 * 109.46977 * 60.00670 * 19 18 17 21 21 C 1.53003 * 109.46992 * 299.99767 * 20 19 18 22 22 H 1.09001 * 109.46966 * 174.56720 * 1 2 3 23 23 H 1.09007 * 109.46935 * 294.56177 * 1 2 3 24 24 H 1.08993 * 109.47416 * 54.55988 * 1 2 3 25 25 H 0.97006 * 120.00043 * 95.00259 * 4 2 1 26 26 H 0.96994 * 119.99709 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47463 * 239.99644 * 15 13 2 28 28 H 1.09000 * 109.46862 * 359.97438 * 15 13 2 29 29 H 1.08995 * 109.46876 * 180.02562 * 16 15 13 30 30 H 1.09004 * 109.46917 * 179.97438 * 17 16 15 31 31 H 1.08994 * 109.47405 * 299.99823 * 17 16 15 32 32 H 1.09003 * 109.46877 * 239.99862 * 18 17 16 33 33 H 1.08993 * 109.47305 * 119.99653 * 18 17 16 34 34 H 1.08999 * 109.47478 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47009 * 180.02562 * 20 19 18 36 36 H 1.08993 * 109.47293 * 59.99598 * 20 19 18 37 37 H 1.09002 * 109.47366 * 240.00428 * 21 20 19 38 38 H 1.09000 * 109.47449 * 119.99578 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6124 -0.6618 3.5090 8 7 2.9253 -1.9389 3.4499 9 14 2.7902 0.2699 5.1183 10 1 2.3754 1.6821 4.9211 11 1 1.9300 -0.3594 6.1523 12 1 4.2072 0.2278 5.5606 13 6 2.0399 -0.7213 -1.2492 14 1 1.6167 -1.7250 -1.2875 15 6 1.6177 0.0581 -2.4963 16 6 2.8626 0.4860 -3.2761 17 6 3.7381 1.3753 -2.3911 18 6 4.1605 0.5958 -1.1441 19 6 3.5659 -0.8129 -1.1976 20 6 4.0756 -1.5345 -2.4468 21 6 3.6533 -0.7550 -3.6939 22 1 -0.3633 -1.0231 -0.0973 23 1 -0.3633 0.4272 0.9347 24 1 -0.3634 0.5958 -0.8372 25 1 2.2491 -1.6319 1.1525 26 1 3.2493 -2.3959 4.2417 27 1 0.9938 -0.5754 -3.1268 28 1 1.0534 0.9420 -2.1985 29 1 2.5617 1.0417 -4.1642 30 1 4.6252 1.6797 -2.9465 31 1 3.1743 2.2593 -2.0934 32 1 3.7971 1.1096 -0.2541 33 1 5.2478 0.5304 -1.1074 34 1 3.8664 -1.3681 -0.3090 35 1 3.6516 -2.5379 -2.4852 36 1 5.1629 -1.6001 -2.4104 37 1 3.0291 -1.3884 -4.3243 38 1 4.5401 -0.4504 -4.2496 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307290395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:48 Heat of formation + Delta-G solvation = -36.511467 kcal Electronic energy + Delta-G solvation = -16472.296202 eV Core-core repulsion = 14119.599791 eV Total energy + Delta-G solvation = -2352.696411 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.49710 -37.07272 -34.23336 -32.21061 -31.64407 -31.27707 -29.21041 -26.05846 -23.76114 -23.33273 -22.66773 -21.18449 -19.23455 -17.34189 -17.18582 -16.90897 -16.54419 -16.02940 -15.28162 -14.85113 -14.12196 -13.73744 -13.41045 -13.28362 -12.99567 -12.88246 -12.84505 -12.78845 -12.73663 -12.63349 -12.47615 -12.15347 -12.09176 -11.81692 -11.63686 -11.21643 -10.96251 -10.56095 -10.50109 -10.43999 -8.92657 -7.90399 -5.16109 1.45464 1.45669 1.55427 2.57534 3.43030 3.72067 3.75598 3.85375 4.10047 4.28667 4.42986 4.49787 4.52731 4.55645 4.59550 4.65170 4.68898 4.75269 4.79234 4.89003 4.94278 5.00126 5.11004 5.19917 5.26751 5.30190 5.37585 5.49945 5.52518 5.53620 5.55091 5.58656 5.67677 5.77197 5.80828 6.32622 7.38004 8.17971 8.40523 9.33573 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.038060 B = 0.008104 C = 0.007730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.503595 B = 3454.388273 C = 3621.262754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.040 0.960 4 N -0.731 5.731 5 C -0.225 4.225 6 H 0.070 0.930 7 C -0.079 4.079 8 N -0.970 5.970 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.296 1.296 12 H -0.296 1.296 13 C -0.076 4.076 14 H 0.051 0.949 15 C -0.102 4.102 16 C -0.082 4.082 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.074 4.074 20 C -0.112 4.112 21 C -0.105 4.105 22 H 0.040 0.960 23 H 0.030 0.970 24 H 0.071 0.929 25 H 0.370 0.630 26 H 0.248 0.752 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 4.899 -16.082 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 H 0.058 0.942 4 N -0.371 5.371 5 C -0.357 4.357 6 H 0.088 0.912 7 C -0.271 4.271 8 N -0.622 5.622 9 Si 0.795 3.205 10 H -0.192 1.192 11 H -0.223 1.223 12 H -0.223 1.223 13 C -0.096 4.096 14 H 0.070 0.930 15 C -0.140 4.140 16 C -0.100 4.100 17 C -0.144 4.144 18 C -0.147 4.147 19 C -0.093 4.093 20 C -0.150 4.150 21 C -0.143 4.143 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.090 0.910 25 H 0.201 0.799 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.163 5.072 -15.973 16.760 hybrid contribution 0.258 -0.293 1.687 1.731 sum 0.095 4.780 -14.286 15.065 Atomic orbital electron populations 1.22356 0.98404 1.00636 1.00353 1.20578 0.92066 0.94957 0.85893 0.94165 1.42607 1.78152 1.10124 1.06195 1.19588 1.33813 0.93855 0.88436 0.91202 1.25449 1.03655 0.96867 1.01135 1.69824 1.53242 1.10116 1.29030 0.85181 0.76668 0.78212 0.80433 1.19238 1.22298 1.22330 1.21262 0.94923 0.98628 0.94751 0.93005 1.21609 0.97459 0.99872 0.95042 1.21039 0.94797 0.96196 0.97957 1.21519 0.99781 0.97656 0.95469 1.21430 0.99151 0.95814 0.98256 1.20849 0.95121 0.96262 0.97091 1.21539 1.00129 0.98592 0.94702 1.21512 1.00144 0.96347 0.96289 0.94123 0.95107 0.90991 0.79861 0.94350 0.90911 0.91529 0.89253 0.91058 0.92315 0.94154 0.93212 0.94604 0.92643 0.92445 0.91102 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.75 9.19 71.98 0.66 -5.09 16 2 C 0.17 6.92 1.79 44.99 0.08 7.00 16 3 H 0.04 1.68 6.60 -2.39 -0.02 1.66 16 4 N -0.73 -37.42 4.38 -322.94 -1.41 -38.84 16 5 C -0.22 -12.70 9.93 84.03 0.83 -11.86 16 6 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 7 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 8 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 9 Si 0.96 47.44 29.55 68.60 2.03 49.47 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 12 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 13 C -0.08 -2.54 1.84 -10.81 -0.02 -2.56 16 14 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 15 C -0.10 -2.55 4.91 30.60 0.15 -2.40 16 16 C -0.08 -1.78 3.19 -10.80 -0.03 -1.81 16 17 C -0.11 -2.64 5.71 30.59 0.17 -2.47 16 18 C -0.11 -3.56 5.36 30.59 0.16 -3.39 16 19 C -0.07 -2.56 2.51 -10.81 -0.03 -2.58 16 20 C -0.11 -3.05 5.71 30.60 0.17 -2.87 16 21 C -0.11 -2.23 5.71 30.58 0.17 -2.05 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.07 2.10 6.85 -2.39 -0.02 2.08 16 25 H 0.37 20.60 7.32 -92.70 -0.68 19.92 16 26 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.64 6.49 -2.39 -0.02 1.63 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.56 6.53 -2.39 -0.02 1.55 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.55 7.18 -2.39 -0.02 1.53 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -63.40 284.45 4.03 -59.37 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.33 Total: 24.70 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 2.80 Total: -34.27 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -1.13 Total: -99.26 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -63.40 4.03 -59.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307290395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.856 kcal (2) G-P(sol) polarization free energy of solvation -63.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds