Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47324 * 2 1 4 4 N 1.46501 * 109.47128 * 239.99847 * 2 1 3 5 5 C 1.36930 * 119.99884 * 84.99998 * 4 2 1 6 6 H 1.07996 * 120.00558 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99790 * 179.97438 * 5 4 2 8 8 N 1.31612 * 119.99925 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47295 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46956 * 120.00538 * 9 7 5 12 12 H 1.48501 * 109.47177 * 240.00162 * 9 7 5 13 13 C 1.53005 * 109.46988 * 120.00041 * 2 1 3 14 14 H 1.09000 * 109.46899 * 55.25376 * 13 2 1 15 15 C 1.52999 * 109.46801 * 295.25340 * 13 2 1 16 16 C 1.52997 * 109.47151 * 239.99847 * 15 13 2 17 17 C 1.52999 * 109.47142 * 60.00264 * 16 15 13 18 18 C 1.52999 * 109.47067 * 300.00246 * 17 16 15 19 19 C 1.52996 * 109.47145 * 175.25470 * 13 2 1 20 20 C 1.52996 * 109.47408 * 179.97438 * 19 13 2 21 21 C 1.52999 * 109.47295 * 300.00496 * 20 19 13 22 22 H 1.08998 * 109.47295 * 305.17289 * 1 2 3 23 23 H 1.09001 * 109.47171 * 65.17178 * 1 2 3 24 24 H 1.09001 * 109.47619 * 185.17366 * 1 2 3 25 25 H 0.97002 * 119.99567 * 265.00197 * 4 2 1 26 26 H 0.96998 * 120.00168 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.47149 * 120.00579 * 15 13 2 28 28 H 1.08996 * 109.47643 * 0.02562 * 15 13 2 29 29 H 1.09001 * 109.47453 * 180.02562 * 16 15 13 30 30 H 1.09005 * 109.46988 * 60.00085 * 17 16 15 31 31 H 1.09001 * 109.47480 * 179.97438 * 17 16 15 32 32 H 1.09003 * 109.47224 * 239.99949 * 18 17 16 33 33 H 1.08999 * 109.47465 * 119.99631 * 18 17 16 34 34 H 1.09001 * 109.47315 * 300.00036 * 19 13 2 35 35 H 1.08999 * 109.47637 * 180.02562 * 20 19 13 36 36 H 1.09005 * 109.46962 * 60.00133 * 20 19 13 37 37 H 1.09001 * 109.47014 * 239.99915 * 21 20 19 38 38 H 1.09000 * 109.47738 * 119.99519 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0076 -2.3757 6 1 1.8919 1.0402 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.9253 -1.9389 -3.4498 9 14 2.7900 0.2698 -5.1182 10 1 2.3751 1.6819 -4.9211 11 1 4.2069 0.2278 -5.5607 12 1 1.9298 -0.3595 -6.1522 13 6 2.0400 -0.7213 1.2493 14 1 1.6088 -1.7215 1.2928 15 6 1.6297 0.0656 2.4956 16 6 2.8815 0.4860 3.2683 17 6 3.7601 1.3653 2.3764 18 6 4.1704 0.5785 1.1300 19 6 3.5653 -0.8255 1.1911 20 6 4.0753 -1.5461 2.4406 21 6 3.6650 -0.7589 3.6867 22 1 -0.3634 0.5920 0.8400 23 1 -0.3633 0.4315 -0.9327 24 1 -0.3634 -1.0235 0.0927 25 1 2.2490 -1.6318 -1.1525 26 1 3.2494 -2.3960 -4.2416 27 1 1.0038 -0.5609 3.1312 28 1 1.0712 0.9529 2.1977 29 1 2.5893 1.0462 4.1565 30 1 3.2020 2.2529 2.0783 31 1 4.6518 1.6652 2.9270 32 1 5.2571 0.5042 1.0885 33 1 3.8070 1.0923 0.2400 34 1 3.8576 -1.3860 0.3031 35 1 5.1620 -1.6200 2.3994 36 1 3.6442 -2.5464 2.4845 37 1 4.5569 -0.4591 4.2370 38 1 3.0391 -1.3850 4.3224 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307290402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = -20.829778 kcal Electronic energy + Delta-G solvation = -16473.987077 eV Core-core repulsion = 14121.970675 eV Total energy + Delta-G solvation = -2352.016402 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.24546 -35.36058 -32.30881 -30.98738 -30.48019 -29.54811 -27.64383 -24.11816 -22.29441 -22.10996 -21.45281 -19.65360 -17.21614 -16.11136 -15.87500 -15.39788 -15.20461 -14.27010 -13.47116 -13.20956 -12.53324 -12.37278 -11.98314 -11.81921 -11.71037 -11.58601 -11.54026 -11.47939 -11.36679 -10.88908 -10.80023 -10.60618 -10.45858 -10.09719 -9.90654 -9.67560 -9.32465 -9.27806 -9.13424 -8.80631 -6.84896 -5.69666 -2.96320 3.46358 3.52302 3.54165 4.64709 4.89393 4.93644 5.03046 5.56684 5.60258 5.61758 5.63784 5.67669 5.72954 5.75950 5.78241 5.83737 5.92722 6.06407 6.10927 6.24169 6.26289 6.32711 6.43166 6.44266 6.53375 6.57135 6.63364 6.72372 6.80218 6.87128 6.94249 7.07380 7.15342 7.27361 7.77210 8.49632 9.60617 10.21291 10.56010 11.53330 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037997 B = 0.008118 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.728150 B = 3448.189105 C = 3616.614911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.048 0.952 4 N -0.722 5.722 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.016 4.016 8 N -0.934 5.934 9 Si 0.902 3.098 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.084 4.084 14 H 0.061 0.939 15 C -0.106 4.106 16 C -0.084 4.084 17 C -0.111 4.111 18 C -0.111 4.111 19 C -0.074 4.074 20 C -0.115 4.115 21 C -0.110 4.110 22 H 0.035 0.965 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.382 0.618 26 H 0.253 0.747 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 3.585 13.729 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.065 0.935 4 N -0.363 5.363 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.212 4.212 8 N -0.583 5.583 9 Si 0.733 3.267 10 H -0.207 1.207 11 H -0.220 1.220 12 H -0.221 1.221 13 C -0.103 4.103 14 H 0.079 0.921 15 C -0.144 4.144 16 C -0.103 4.103 17 C -0.149 4.149 18 C -0.148 4.148 19 C -0.092 4.092 20 C -0.152 4.152 21 C -0.148 4.148 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.216 0.784 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.317 3.720 13.585 14.088 hybrid contribution 0.121 0.097 -0.986 0.998 sum 0.438 3.817 12.599 13.172 Atomic orbital electron populations 1.22487 0.99890 1.00292 0.99964 1.20349 0.91189 0.95452 0.86226 0.93456 1.42432 1.77957 1.10639 1.05292 1.19264 1.35630 0.93747 0.87420 0.91381 1.24692 1.02668 0.95947 0.97869 1.69663 1.51431 1.08612 1.28580 0.86186 0.77222 0.78804 0.84446 1.20690 1.22042 1.22057 1.21363 0.95272 0.98976 0.94669 0.92055 1.21610 0.96318 0.99979 0.96451 1.20997 0.95789 0.96024 0.97479 1.21536 0.98643 0.97956 0.96730 1.21489 0.99346 0.96104 0.97866 1.20940 0.94688 0.96142 0.97464 1.21576 1.00071 0.98568 0.95022 1.21508 0.99191 0.96643 0.97432 0.94557 0.92992 0.93872 0.78388 0.93751 0.92809 0.91846 0.92194 0.92507 0.92976 0.93108 0.90690 0.89799 0.92644 0.92519 0.92792 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.20 37.16 0.34 -2.76 16 2 C 0.18 3.53 1.76 -67.93 -0.12 3.42 16 3 H 0.05 0.98 6.63 -51.93 -0.34 0.64 16 4 N -0.72 -17.86 4.37 -53.42 -0.23 -18.09 16 5 C -0.23 -6.32 9.93 -15.06 -0.15 -6.47 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 8 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 9 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 13 C -0.08 -1.41 1.84 -90.62 -0.17 -1.58 16 14 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 15 C -0.11 -1.49 4.91 -26.73 -0.13 -1.62 16 16 C -0.08 -1.09 3.19 -90.66 -0.29 -1.38 16 17 C -0.11 -1.53 5.71 -26.73 -0.15 -1.68 16 18 C -0.11 -1.82 5.36 -26.73 -0.14 -1.96 16 19 C -0.07 -1.26 2.51 -90.62 -0.23 -1.48 16 20 C -0.11 -1.64 5.71 -26.73 -0.15 -1.80 16 21 C -0.11 -1.38 5.70 -26.77 -0.15 -1.53 16 22 H 0.04 0.57 6.88 -51.93 -0.36 0.22 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.38 10.14 7.29 -40.82 -0.30 9.85 16 26 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.90 6.53 -51.93 -0.34 0.56 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.42 6.54 -51.93 -0.34 1.08 16 34 H 0.08 1.71 7.15 -51.93 -0.37 1.34 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 284.47 15.07 4.29 4.29 Total: -1.00 -28.77 284.47 -8.35 -37.12 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.67 Total: 6.03 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -1.44 Total: -19.42 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.49 Total: -45.61 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.77 -8.35 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307290402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.289 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds