Wall clock time and date at job start Mon Mar 30 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47324 * 2 1 4 4 N 1.46501 * 109.47128 * 239.99847 * 2 1 3 5 5 C 1.36930 * 119.99884 * 84.99998 * 4 2 1 6 6 H 1.07996 * 120.00558 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99790 * 179.97438 * 5 4 2 8 8 N 1.31612 * 119.99925 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47295 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46956 * 120.00538 * 9 7 5 12 12 H 1.48501 * 109.47177 * 240.00162 * 9 7 5 13 13 C 1.53005 * 109.46988 * 120.00041 * 2 1 3 14 14 H 1.09000 * 109.46899 * 55.25376 * 13 2 1 15 15 C 1.52999 * 109.46801 * 295.25340 * 13 2 1 16 16 C 1.52997 * 109.47151 * 239.99847 * 15 13 2 17 17 C 1.52999 * 109.47142 * 60.00264 * 16 15 13 18 18 C 1.52999 * 109.47067 * 300.00246 * 17 16 15 19 19 C 1.52996 * 109.47145 * 175.25470 * 13 2 1 20 20 C 1.52996 * 109.47408 * 179.97438 * 19 13 2 21 21 C 1.52999 * 109.47295 * 300.00496 * 20 19 13 22 22 H 1.08998 * 109.47295 * 305.17289 * 1 2 3 23 23 H 1.09001 * 109.47171 * 65.17178 * 1 2 3 24 24 H 1.09001 * 109.47619 * 185.17366 * 1 2 3 25 25 H 0.97002 * 119.99567 * 265.00197 * 4 2 1 26 26 H 0.96998 * 120.00168 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.47149 * 120.00579 * 15 13 2 28 28 H 1.08996 * 109.47643 * 0.02562 * 15 13 2 29 29 H 1.09001 * 109.47453 * 180.02562 * 16 15 13 30 30 H 1.09005 * 109.46988 * 60.00085 * 17 16 15 31 31 H 1.09001 * 109.47480 * 179.97438 * 17 16 15 32 32 H 1.09003 * 109.47224 * 239.99949 * 18 17 16 33 33 H 1.08999 * 109.47465 * 119.99631 * 18 17 16 34 34 H 1.09001 * 109.47315 * 300.00036 * 19 13 2 35 35 H 1.08999 * 109.47637 * 180.02562 * 20 19 13 36 36 H 1.09005 * 109.46962 * 60.00133 * 20 19 13 37 37 H 1.09001 * 109.47014 * 239.99915 * 21 20 19 38 38 H 1.09000 * 109.47738 * 119.99519 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0076 -2.3757 6 1 1.8919 1.0402 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.9253 -1.9389 -3.4498 9 14 2.7900 0.2698 -5.1182 10 1 2.3751 1.6819 -4.9211 11 1 4.2069 0.2278 -5.5607 12 1 1.9298 -0.3595 -6.1522 13 6 2.0400 -0.7213 1.2493 14 1 1.6088 -1.7215 1.2928 15 6 1.6297 0.0656 2.4956 16 6 2.8815 0.4860 3.2683 17 6 3.7601 1.3653 2.3764 18 6 4.1704 0.5785 1.1300 19 6 3.5653 -0.8255 1.1911 20 6 4.0753 -1.5461 2.4406 21 6 3.6650 -0.7589 3.6867 22 1 -0.3634 0.5920 0.8400 23 1 -0.3633 0.4315 -0.9327 24 1 -0.3634 -1.0235 0.0927 25 1 2.2490 -1.6318 -1.1525 26 1 3.2494 -2.3960 -4.2416 27 1 1.0038 -0.5609 3.1312 28 1 1.0712 0.9529 2.1977 29 1 2.5893 1.0462 4.1565 30 1 3.2020 2.2529 2.0783 31 1 4.6518 1.6652 2.9270 32 1 5.2571 0.5042 1.0885 33 1 3.8070 1.0923 0.2400 34 1 3.8576 -1.3860 0.3031 35 1 5.1620 -1.6200 2.3994 36 1 3.6442 -2.5464 2.4845 37 1 4.5569 -0.4591 4.2370 38 1 3.0391 -1.3850 4.3224 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307290402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:52 Heat of formation + Delta-G solvation = -36.515878 kcal Electronic energy + Delta-G solvation = -16474.667278 eV Core-core repulsion = 14121.970675 eV Total energy + Delta-G solvation = -2352.696602 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.49608 -37.07276 -34.23326 -32.21024 -31.64119 -31.27564 -29.21516 -26.05572 -23.75914 -23.33042 -22.67076 -21.18388 -19.23395 -17.34101 -17.18551 -16.90816 -16.54208 -16.02874 -15.28286 -14.85239 -14.12204 -13.73393 -13.41003 -13.28310 -12.99266 -12.88213 -12.84443 -12.78794 -12.73479 -12.63528 -12.47631 -12.15421 -12.09356 -11.81734 -11.63667 -11.21459 -10.96253 -10.56013 -10.49991 -10.44145 -8.92621 -7.90336 -5.15993 1.45497 1.45670 1.55436 2.57575 3.43100 3.72146 3.75590 3.85484 4.10088 4.28613 4.43077 4.49861 4.52763 4.55720 4.59582 4.65235 4.68927 4.75260 4.79212 4.89035 4.94359 5.00242 5.10986 5.19942 5.26766 5.30226 5.37594 5.50034 5.52556 5.53687 5.55141 5.58778 5.67655 5.77217 5.80929 6.32621 7.38070 8.18054 8.40649 9.33635 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037997 B = 0.008118 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.728150 B = 3448.189105 C = 3616.614911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.040 0.960 4 N -0.731 5.731 5 C -0.225 4.225 6 H 0.070 0.930 7 C -0.079 4.079 8 N -0.970 5.970 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.296 1.296 12 H -0.296 1.296 13 C -0.076 4.076 14 H 0.052 0.948 15 C -0.102 4.102 16 C -0.082 4.082 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.074 4.074 20 C -0.112 4.112 21 C -0.106 4.106 22 H 0.071 0.929 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.370 0.630 26 H 0.248 0.752 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.129 4.880 16.066 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 H 0.058 0.942 4 N -0.371 5.371 5 C -0.357 4.357 6 H 0.088 0.912 7 C -0.271 4.271 8 N -0.622 5.622 9 Si 0.795 3.205 10 H -0.192 1.192 11 H -0.223 1.223 12 H -0.223 1.223 13 C -0.096 4.096 14 H 0.070 0.930 15 C -0.140 4.140 16 C -0.100 4.100 17 C -0.144 4.144 18 C -0.146 4.146 19 C -0.093 4.093 20 C -0.150 4.150 21 C -0.143 4.143 22 H 0.090 0.910 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.201 0.799 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.138 5.053 15.957 16.738 hybrid contribution 0.256 -0.291 -1.687 1.731 sum 0.117 4.762 14.270 15.044 Atomic orbital electron populations 1.22353 0.98402 1.00630 1.00358 1.20579 0.92062 0.94947 0.85899 0.94178 1.42606 1.78149 1.10125 1.06191 1.19585 1.33813 0.93856 0.88434 0.91203 1.25447 1.03658 0.96863 1.01130 1.69819 1.53235 1.10117 1.29031 0.85182 0.76664 0.78214 0.80443 1.19240 1.22337 1.22305 1.21270 0.94927 0.98621 0.94750 0.92984 1.21603 0.97449 0.99838 0.95077 1.21031 0.94768 0.96242 0.97947 1.21520 0.99797 0.97656 0.95452 1.21428 0.99117 0.95845 0.98247 1.20853 0.95103 0.96270 0.97085 1.21539 1.00140 0.98580 0.94704 1.21505 1.00201 0.96291 0.96298 0.90997 0.95102 0.94131 0.79854 0.94350 0.90898 0.91541 0.89257 0.92337 0.91068 0.93246 0.94155 0.94593 0.92458 0.92628 0.91094 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.75 9.20 71.98 0.66 -5.09 16 2 C 0.17 6.92 1.76 44.99 0.08 7.00 16 3 H 0.04 1.67 6.63 -2.39 -0.02 1.65 16 4 N -0.73 -37.40 4.37 -322.94 -1.41 -38.81 16 5 C -0.22 -12.69 9.93 84.04 0.83 -11.86 16 6 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 7 C -0.08 -4.65 5.50 84.87 0.47 -4.18 16 8 N -0.97 -60.69 13.06 21.65 0.28 -60.41 16 9 Si 0.96 47.44 29.55 68.60 2.03 49.46 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 13 C -0.08 -2.54 1.84 -10.79 -0.02 -2.56 16 14 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 15 C -0.10 -2.55 4.91 30.59 0.15 -2.40 16 16 C -0.08 -1.78 3.19 -10.82 -0.03 -1.81 16 17 C -0.11 -2.65 5.71 30.59 0.17 -2.47 16 18 C -0.11 -3.56 5.36 30.59 0.16 -3.40 16 19 C -0.07 -2.55 2.51 -10.80 -0.03 -2.58 16 20 C -0.11 -3.05 5.71 30.59 0.17 -2.88 16 21 C -0.11 -2.23 5.70 30.57 0.17 -2.06 16 22 H 0.07 2.10 6.88 -2.39 -0.02 2.08 16 23 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 25 H 0.37 20.59 7.29 -92.71 -0.68 19.91 16 26 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.07 1.64 6.53 -2.39 -0.02 1.63 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.04 1.57 6.54 -2.39 -0.02 1.55 16 34 H 0.04 1.55 7.15 -2.39 -0.02 1.54 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -63.37 284.47 4.03 -59.34 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.34 Total: 24.69 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 2.80 Total: -34.27 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -1.13 Total: -99.22 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.46 kcal Total: -63.37 4.03 -59.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307290402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.822 kcal (2) G-P(sol) polarization free energy of solvation -63.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds