Wall clock time and date at job start Mon Mar 30 2020 02:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47297 * 2 1 4 4 C 1.50703 * 109.46686 * 119.99856 * 2 1 3 5 5 H 1.08005 * 120.00078 * 119.99971 * 4 2 1 6 6 C 1.37880 * 120.00278 * 299.99885 * 4 2 1 7 7 N 1.31508 * 119.99642 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99980 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47303 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46987 * 120.00136 * 8 6 4 11 11 H 1.48503 * 109.46801 * 239.99678 * 8 6 4 12 12 N 1.46900 * 109.47136 * 239.99325 * 2 1 3 13 13 C 1.46904 * 110.99720 * 85.00595 * 12 2 1 14 14 C 1.52998 * 109.47161 * 179.97438 * 13 12 2 15 15 C 1.53006 * 112.84869 * 181.52783 * 14 13 12 16 16 C 1.52999 * 117.49827 * 2.29157 * 15 14 13 17 17 C 1.52995 * 117.49647 * 293.66740 * 15 14 13 18 18 C 1.53780 * 113.61510 * 50.33517 * 14 13 12 19 19 C 1.53785 * 87.07909 * 219.93585 * 18 14 13 20 20 C 1.53779 * 113.69091 * 312.79515 * 14 13 12 21 21 H 1.08997 * 109.46447 * 60.00173 * 1 2 3 22 22 H 1.09000 * 109.47482 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47346 * 300.00568 * 1 2 3 24 24 H 0.97004 * 120.00148 * 180.02562 * 7 6 4 25 25 H 1.00894 * 110.99980 * 321.05276 * 12 2 1 26 26 H 1.08996 * 109.47303 * 59.99350 * 13 12 2 27 27 H 1.08999 * 109.47071 * 300.00173 * 13 12 2 28 28 H 1.08998 * 115.54929 * 147.99760 * 15 14 13 29 29 H 1.08998 * 117.49896 * 359.97438 * 16 15 14 30 30 H 1.09002 * 117.50037 * 145.02189 * 16 15 14 31 31 H 1.09005 * 117.50009 * 214.97368 * 17 15 14 32 32 H 1.09000 * 117.50518 * 0.02562 * 17 15 14 33 33 H 1.08998 * 113.61906 * 105.38199 * 18 14 13 34 34 H 1.09003 * 113.68681 * 334.49087 * 18 14 13 35 35 H 1.08997 * 113.61656 * 139.98292 * 19 18 14 36 36 H 1.09005 * 113.61081 * 270.88347 * 19 18 14 37 37 H 1.08999 * 113.61211 * 25.44261 * 20 14 13 38 38 H 1.08996 * 113.61733 * 254.53952 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1472 -2.2864 3.6039 10 1 3.1470 -0.1858 4.8161 11 1 1.1675 -1.5865 4.8166 12 7 2.0197 -0.6926 -1.1994 13 6 2.0826 0.2224 -2.3469 14 6 2.5964 -0.5331 -3.5741 15 6 2.7278 0.3599 -4.8095 16 6 2.3946 1.8443 -4.6469 17 6 1.4405 0.9254 -5.4126 18 6 1.8506 -1.8508 -3.8431 19 6 3.2165 -2.4589 -4.2030 20 6 3.8443 -1.3875 -3.2960 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7086 1.1613 3.4844 25 1 1.4496 -1.4980 -1.4099 26 1 2.7589 1.0460 -2.1182 27 1 1.0873 0.6162 -2.5525 28 1 3.5322 0.0967 -5.4964 29 1 2.0812 2.1846 -3.6600 30 1 2.9797 2.5580 -5.2268 31 1 1.3980 1.0346 -6.4963 32 1 0.4999 0.6616 -4.9291 33 1 1.1605 -1.7980 -4.6852 34 1 1.3990 -2.2880 -2.9526 35 1 3.3520 -3.4761 -3.8356 36 1 3.4797 -2.3492 -5.2550 37 1 3.9384 -1.6970 -2.2551 38 1 4.7638 -0.9607 -3.6964 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308651969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:18 Heat of formation + Delta-G solvation = 39.593985 kcal Electronic energy + Delta-G solvation = -15880.853789 eV Core-core repulsion = 13531.457558 eV Total energy + Delta-G solvation = -2349.396231 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85907 -35.80998 -35.27126 -32.30063 -29.06436 -26.09614 -25.33562 -25.04676 -22.98130 -22.05186 -21.24222 -20.08579 -17.49300 -16.35905 -15.77939 -15.33798 -14.61598 -14.24281 -13.90655 -13.57491 -13.08081 -12.79534 -12.34345 -11.76456 -11.67471 -11.43816 -11.35641 -11.12741 -10.91828 -10.71026 -10.47689 -10.42562 -10.28535 -10.12347 -10.03480 -9.82482 -9.61675 -9.32098 -8.91277 -8.33239 -7.13132 -5.95260 -3.98200 3.33472 3.41117 3.46542 3.90255 4.46768 4.73447 4.92775 4.95070 5.13889 5.19436 5.22319 5.35945 5.36440 5.55693 5.68650 5.75060 5.92083 6.03780 6.08897 6.18160 6.24534 6.26268 6.30722 6.35103 6.40624 6.50544 6.73181 6.80269 6.87840 6.97303 7.15101 7.43860 7.77584 7.93301 8.33055 8.60544 8.68384 9.09675 9.67225 11.11898 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037521 B = 0.006839 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.066825 B = 4093.443259 C = 4470.691590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.681 5.681 13 C 0.077 3.923 14 C -0.054 4.054 15 C -0.122 4.122 16 C -0.182 4.182 17 C -0.181 4.181 18 C -0.130 4.130 19 C -0.142 4.142 20 C -0.118 4.118 21 H 0.004 0.996 22 H 0.026 0.974 23 H 0.088 0.912 24 H 0.258 0.742 25 H 0.323 0.677 26 H 0.065 0.935 27 H 0.016 0.984 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.920 -1.847 -13.873 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.312 5.312 13 C -0.053 4.053 14 C -0.054 4.054 15 C -0.140 4.140 16 C -0.219 4.219 17 C -0.218 4.218 18 C -0.168 4.168 19 C -0.179 4.179 20 C -0.156 4.156 21 H 0.023 0.977 22 H 0.045 0.955 23 H 0.107 0.893 24 H 0.068 0.932 25 H 0.141 0.859 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.512 -1.652 -13.552 13.882 hybrid contribution -0.784 -0.178 0.615 1.012 sum 1.728 -1.830 -12.937 13.180 Atomic orbital electron populations 1.22424 1.00886 0.99056 1.00383 1.19153 0.89452 0.94406 0.86659 0.95036 1.21216 1.29936 1.12315 0.89635 0.91930 1.24958 0.95402 0.95231 0.99046 1.69896 1.37496 1.23310 1.23147 0.86469 0.78485 0.79662 0.82941 1.19752 1.21181 1.21266 1.60839 1.57854 1.09072 1.03435 1.21734 0.97796 0.95541 0.90241 1.21316 0.97918 0.93228 0.92974 1.21971 0.98759 0.94636 0.98661 1.23058 1.03495 0.92988 1.02389 1.22888 0.94812 1.05025 0.99036 1.22972 0.96250 0.96441 1.01097 1.22777 0.97282 0.98653 0.99209 1.22945 0.95539 0.95616 1.01465 0.97745 0.95477 0.89331 0.93195 0.85893 0.91656 0.96601 0.88159 0.88097 0.89295 0.89369 0.88945 0.92296 0.89706 0.91996 0.91208 0.87669 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.35 2.57 -68.86 -0.18 5.17 16 3 H 0.03 0.88 7.80 -51.93 -0.40 0.48 16 4 C -0.49 -13.72 8.84 -34.44 -0.30 -14.02 16 5 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -26.00 11.32 55.43 0.63 -25.37 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 N -0.68 -14.36 5.05 -107.95 -0.54 -14.90 16 13 C 0.08 1.39 3.66 -3.82 -0.01 1.38 16 14 C -0.05 -0.80 1.09 -153.70 -0.17 -0.97 16 15 C -0.12 -1.57 5.19 -90.62 -0.47 -2.04 16 16 C -0.18 -2.31 9.66 -26.73 -0.26 -2.56 16 17 C -0.18 -2.16 9.92 -26.73 -0.27 -2.43 16 18 C -0.13 -1.81 7.01 -25.92 -0.18 -1.99 16 19 C -0.14 -1.82 7.81 -25.92 -0.20 -2.02 16 20 C -0.12 -1.74 7.07 -25.92 -0.18 -1.93 16 21 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 22 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 23 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.32 6.52 6.23 -39.29 -0.24 6.28 16 26 H 0.07 1.26 7.36 -51.93 -0.38 0.88 16 27 H 0.02 0.30 7.14 -51.93 -0.37 -0.07 16 28 H 0.10 1.20 8.10 -51.93 -0.42 0.77 16 29 H 0.10 1.43 6.17 -51.93 -0.32 1.11 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.76 7.91 -51.93 -0.41 0.35 16 34 H 0.08 1.27 6.02 -51.93 -0.31 0.96 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.80 7.21 -51.93 -0.37 1.43 16 38 H 0.05 0.76 8.10 -51.93 -0.42 0.33 16 LS Contribution 294.81 15.07 4.44 4.44 Total: -1.00 -27.95 294.81 -8.93 -36.87 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.45 Total: 6.07 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -1.99 Total: -23.78 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.08 Total: -40.27 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.95 -8.93 -36.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308651969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.468 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds