Wall clock time and date at job start Mon Mar 30 2020 02:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46984 * 2 1 4 4 C 1.50705 * 109.47487 * 240.00362 * 2 1 3 5 5 H 1.08002 * 119.99308 * 275.00293 * 4 2 1 6 6 C 1.37872 * 120.00207 * 95.00004 * 4 2 1 7 7 N 1.31510 * 120.00308 * 184.91784 * 6 4 2 8 8 Si 1.86807 * 119.99903 * 4.90998 * 6 4 2 9 9 H 1.48506 * 109.46807 * 84.82786 * 8 6 4 10 10 H 1.48495 * 109.46947 * 204.82732 * 8 6 4 11 11 H 1.48500 * 109.46933 * 324.82921 * 8 6 4 12 12 N 1.46904 * 109.47213 * 119.99885 * 2 1 3 13 13 C 1.46896 * 111.00337 * 275.00070 * 12 2 1 14 14 H 1.09010 * 112.90565 * 336.25394 * 13 12 2 15 15 C 1.53777 * 113.61335 * 107.49857 * 13 12 2 16 16 C 1.53780 * 87.07946 * 139.98462 * 15 13 12 17 17 C 1.53777 * 87.08277 * 334.56721 * 16 15 13 18 18 H 1.09000 * 113.61677 * 270.80270 * 17 16 15 19 19 C 1.52998 * 113.61406 * 139.97977 * 17 16 15 20 20 C 1.53779 * 113.61607 * 100.37229 * 19 17 16 21 21 C 1.54046 * 86.98719 * 140.02048 * 20 19 17 22 22 C 1.53780 * 87.07801 * 334.57012 * 21 20 19 23 23 H 1.08997 * 109.46638 * 175.06914 * 1 2 3 24 24 H 1.08999 * 109.46873 * 295.07003 * 1 2 3 25 25 H 1.08998 * 109.46828 * 55.07039 * 1 2 3 26 26 H 0.96993 * 120.00185 * 179.97438 * 7 6 4 27 27 H 1.00895 * 110.99668 * 151.04799 * 12 2 1 28 28 H 1.09002 * 113.61541 * 25.43445 * 15 13 12 29 29 H 1.09002 * 113.69584 * 254.54165 * 15 13 12 30 30 H 1.09004 * 113.61268 * 220.01815 * 16 15 13 31 31 H 1.08997 * 113.69095 * 89.12915 * 16 15 13 32 32 H 1.09008 * 112.85054 * 329.17168 * 19 17 16 33 33 H 1.09000 * 113.61121 * 254.61770 * 20 19 17 34 34 H 1.08997 * 113.61172 * 25.51146 * 20 19 17 35 35 H 1.09004 * 113.62078 * 220.02202 * 21 20 19 36 36 H 1.09002 * 113.69244 * 89.12385 * 21 20 19 37 37 H 1.09000 * 113.61551 * 270.88399 * 22 21 20 38 38 H 1.08998 * 113.69382 * 139.98820 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1355 -1.7854 -1.2290 6 6 2.3604 0.0122 -2.3580 7 7 2.7061 -0.6129 -3.4622 8 14 2.3134 1.8792 -2.3174 9 1 3.5989 2.3951 -1.7818 10 1 2.1059 2.3992 -3.6927 11 1 1.1983 2.3274 -1.4451 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2225 2.3469 14 1 2.1673 1.2684 2.0514 15 6 0.9910 -0.0336 3.3995 16 6 2.0662 0.2357 4.4655 17 6 3.1031 -0.2001 3.4168 18 1 3.3102 -1.2702 3.4259 19 6 4.3743 0.6512 3.4213 20 6 5.5535 -0.0062 4.1576 21 6 6.4539 0.5378 3.0324 22 6 5.2059 0.5235 2.1340 23 1 -0.3632 -1.0239 -0.0883 24 1 -0.3633 0.4354 0.9308 25 1 -0.3633 0.5884 -0.8425 26 1 2.9364 -0.1046 -4.2555 27 1 2.9173 -1.1204 1.0287 28 1 0.6196 -1.0584 3.4029 29 1 0.1908 0.7065 3.3898 30 1 2.0065 -0.4328 5.3244 31 1 2.1475 1.2846 4.7503 32 1 4.1919 1.6828 3.7226 33 1 5.7583 0.4333 5.1338 34 1 5.4987 -1.0945 4.1854 35 1 7.2279 -0.1614 2.7158 36 1 6.8409 1.5383 3.2262 37 1 5.0563 -0.4203 1.6095 38 1 5.1293 1.3897 1.4769 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308652699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:22 Heat of formation + Delta-G solvation = 24.462690 kcal Electronic energy + Delta-G solvation = -15962.638758 eV Core-core repulsion = 13612.586384 eV Total energy + Delta-G solvation = -2350.052373 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.71001 -37.14655 -34.69665 -31.92152 -28.69386 -27.28671 -25.43982 -25.19464 -23.31730 -22.48411 -19.82158 -19.19767 -18.96760 -16.95719 -15.61250 -15.28003 -14.92815 -14.48386 -13.69669 -13.42708 -12.86117 -12.59283 -12.41374 -12.25297 -12.05275 -11.64004 -11.49301 -11.21033 -11.06509 -10.98979 -10.68299 -10.58946 -10.39966 -10.25572 -10.14797 -9.80717 -9.56960 -9.31609 -8.91320 -8.56277 -7.36329 -6.09945 -4.09842 3.25180 3.34212 3.36784 4.39162 4.58476 4.76759 4.82959 4.98608 5.09225 5.12293 5.27835 5.33664 5.48340 5.56931 5.66256 5.79272 5.90024 5.95721 6.00324 6.01982 6.06312 6.22070 6.25981 6.33174 6.40748 6.47132 6.62724 6.72425 6.74166 6.82587 6.91006 7.01004 7.46759 7.67299 8.07675 8.47225 8.71422 8.99807 9.55064 11.03282 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024977 B = 0.009308 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.782667 B = 3007.587439 C = 3660.415632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.180 3.820 3 H 0.003 0.997 4 C -0.517 4.517 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.874 3.126 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.266 1.266 12 N -0.671 5.671 13 C 0.071 3.929 14 H 0.059 0.941 15 C -0.128 4.128 16 C -0.137 4.137 17 C -0.103 4.103 18 H 0.093 0.907 19 C -0.101 4.101 20 C -0.134 4.134 21 C -0.144 4.144 22 C -0.135 4.135 23 H 0.049 0.951 24 H 0.021 0.979 25 H 0.037 0.963 26 H 0.264 0.736 27 H 0.340 0.660 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.085 3.579 14.669 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.071 3.929 3 H 0.020 0.980 4 C -0.555 4.555 5 H 0.097 0.903 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.702 3.298 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.191 1.191 12 N -0.303 5.303 13 C -0.040 4.040 14 H 0.077 0.923 15 C -0.167 4.167 16 C -0.175 4.175 17 C -0.122 4.122 18 H 0.111 0.889 19 C -0.119 4.119 20 C -0.171 4.171 21 C -0.182 4.182 22 C -0.173 4.173 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.160 0.840 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.524 3.351 14.614 15.204 hybrid contribution 0.747 1.634 -0.443 1.850 sum 3.271 4.985 14.172 15.375 Atomic orbital electron populations 1.21827 0.98280 1.00503 0.97636 1.19612 0.92360 0.92315 0.88578 0.97976 1.21113 1.43392 0.95841 0.95196 0.90346 1.25015 0.94484 0.98039 0.95357 1.69899 1.46295 1.35717 1.01633 0.86913 0.78968 0.86823 0.77140 1.20340 1.21490 1.19060 1.60803 1.32444 1.31885 1.05135 1.23020 0.94712 0.95464 0.90830 0.92281 1.23019 0.96364 1.01867 0.95434 1.22814 0.97431 1.00618 0.96665 1.22855 0.92807 0.99658 0.96853 0.88860 1.22535 0.93467 0.98968 0.96948 1.22969 0.96464 1.00452 0.97253 1.22865 0.96934 1.00883 0.97502 1.22894 0.95317 1.02900 0.96179 0.93152 0.95978 0.94388 0.92645 0.84044 0.89713 0.92614 0.91982 0.90901 0.89876 0.92151 0.90197 0.91735 0.90762 0.89519 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 9.42 37.16 0.35 -2.43 16 2 C 0.18 4.27 2.25 -68.86 -0.16 4.12 16 3 H 0.00 0.06 4.62 -51.93 -0.24 -0.18 16 4 C -0.52 -14.42 8.84 -34.44 -0.30 -14.72 16 5 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 8 Si 0.87 21.67 26.99 -169.99 -4.59 17.08 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 11 H -0.27 -6.40 6.82 56.52 0.39 -6.02 16 12 N -0.67 -13.75 6.36 -100.10 -0.64 -14.39 16 13 C 0.07 1.21 3.24 -66.91 -0.22 0.99 16 14 H 0.06 1.10 7.44 -51.92 -0.39 0.71 16 15 C -0.13 -1.93 7.68 -25.92 -0.20 -2.13 16 16 C -0.14 -1.75 7.64 -25.92 -0.20 -1.95 16 17 C -0.10 -1.45 3.05 -89.81 -0.27 -1.72 16 18 H 0.09 1.35 7.99 -51.93 -0.42 0.93 16 19 C -0.10 -1.32 3.47 -89.81 -0.31 -1.64 16 20 C -0.13 -1.54 7.66 -25.78 -0.20 -1.73 16 21 C -0.14 -1.73 8.09 -25.78 -0.21 -1.94 16 22 C -0.14 -1.96 7.42 -25.92 -0.19 -2.16 16 23 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.02 0.44 7.79 -51.93 -0.40 0.03 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.34 7.07 7.88 -39.29 -0.31 6.76 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.87 7.98 -51.93 -0.41 0.46 16 32 H 0.08 1.07 7.99 -51.92 -0.41 0.65 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.90 7.99 -51.93 -0.41 0.49 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.36 7.82 -51.93 -0.41 0.96 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -28.76 299.72 -8.72 -37.49 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.78 Total: 5.12 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -2.01 Total: -23.30 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.14 Total: -40.90 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.59 Total: 17.08 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.76 -8.72 -37.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308652699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.950 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds