Wall clock time and date at job start Mon Mar 30 2020 02:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46603 * 2 1 4 4 C 1.50694 * 109.47085 * 240.00279 * 2 1 3 5 5 H 1.08001 * 119.99914 * 274.99259 * 4 2 1 6 6 C 1.37877 * 120.00456 * 94.99347 * 4 2 1 7 7 N 1.31513 * 120.00271 * 184.90707 * 6 4 2 8 8 Si 1.86807 * 119.99617 * 4.90784 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.82552 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82178 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.82491 * 8 6 4 12 12 N 1.46896 * 109.47387 * 119.99707 * 2 1 3 13 13 C 1.46905 * 111.00076 * 275.00373 * 12 2 1 14 14 H 1.08997 * 112.84621 * 336.19710 * 13 12 2 15 15 C 1.53778 * 113.61433 * 107.50375 * 13 12 2 16 16 C 1.53781 * 87.08378 * 89.11291 * 15 13 12 17 17 C 1.53785 * 113.61294 * 205.00025 * 13 12 2 18 18 H 1.08990 * 113.61413 * 156.33619 * 17 13 12 19 19 C 1.53003 * 113.61362 * 25.51345 * 17 13 12 20 20 C 1.53781 * 113.60978 * 159.13525 * 19 17 13 21 21 C 1.53959 * 87.01945 * 220.05113 * 20 19 17 22 22 C 1.53784 * 87.11211 * 25.36316 * 21 20 19 23 23 H 1.08995 * 109.47295 * 55.08449 * 1 2 3 24 24 H 1.08997 * 109.46878 * 295.07808 * 1 2 3 25 25 H 1.09003 * 109.46775 * 175.08495 * 1 2 3 26 26 H 0.97000 * 119.99538 * 179.97438 * 7 6 4 27 27 H 1.00903 * 110.99792 * 38.95519 * 12 2 1 28 28 H 1.08994 * 113.61342 * 203.66540 * 15 13 12 29 29 H 1.08999 * 113.61623 * 334.56744 * 15 13 12 30 30 H 1.08999 * 113.61592 * 270.88935 * 16 15 13 31 31 H 1.08995 * 113.68932 * 139.98763 * 16 15 13 32 32 H 1.08991 * 112.85221 * 290.33588 * 19 17 13 33 33 H 1.08999 * 113.61711 * 334.57322 * 20 19 17 34 34 H 1.09001 * 113.61297 * 105.47372 * 20 19 17 35 35 H 1.08997 * 113.53665 * 270.81698 * 21 20 19 36 36 H 1.08993 * 113.74391 * 139.94704 * 21 20 19 37 37 H 1.08992 * 113.61470 * 220.08989 * 22 21 20 38 38 H 1.09000 * 113.68768 * 89.19533 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.1356 -1.7854 -1.2290 6 6 2.3602 0.0121 -2.3581 7 7 2.7060 -0.6131 -3.4622 8 14 2.3131 1.8792 -2.3175 9 1 3.5985 2.3952 -1.7821 10 1 2.1055 2.3991 -3.6930 11 1 1.1979 2.3274 -1.4453 12 7 2.0198 -0.6924 1.1994 13 6 2.0825 0.2227 2.3469 14 1 2.1682 1.2681 2.0503 15 6 0.9911 -0.0335 3.3995 16 6 1.9709 -1.0164 4.0619 17 6 3.1032 -0.1998 3.4167 18 1 3.4537 0.6257 4.0360 19 6 4.2452 -1.0583 2.8691 20 6 5.4967 -1.0613 3.7627 21 6 6.3243 -0.9980 2.4660 22 6 5.0982 -0.3442 1.8073 23 1 -0.3633 0.5882 -0.8426 24 1 -0.3633 0.4356 0.9308 25 1 -0.3633 -1.0239 -0.0881 26 1 2.9362 -0.1047 -4.2556 27 1 1.4497 -1.4979 1.4100 28 1 0.7642 0.8376 4.0141 29 1 0.0988 -0.5119 2.9958 30 1 1.8939 -2.0341 3.6792 31 1 1.9665 -0.9721 5.1509 32 1 3.9199 -2.0546 2.5700 33 1 5.5911 -0.1713 4.3849 34 1 5.6311 -1.9867 4.3228 35 1 6.5686 -1.9785 2.0573 36 1 7.1897 -0.3384 2.5295 37 1 4.9113 -0.6914 0.7912 38 1 5.0823 0.7423 1.8930 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308652700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:23 Heat of formation + Delta-G solvation = 13.911714 kcal Electronic energy + Delta-G solvation = -16130.753230 eV Core-core repulsion = 13780.243333 eV Total energy + Delta-G solvation = -2350.509898 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.90580 -38.38278 -36.33083 -33.93337 -29.98858 -28.27704 -27.18104 -26.31061 -25.05550 -23.59790 -22.02842 -20.13553 -19.92502 -18.77995 -17.01566 -16.50775 -16.07498 -15.81742 -15.17638 -14.67810 -14.47476 -14.30122 -14.07289 -13.65520 -13.30459 -13.14366 -12.94723 -12.63984 -12.60931 -12.56215 -12.15819 -12.04868 -11.78760 -11.46387 -11.27994 -11.17544 -11.05872 -10.71881 -10.47387 -10.39815 -8.81835 -8.24032 -6.24085 1.32941 1.34460 1.43308 2.35704 3.07422 3.53498 3.69861 3.85613 3.99545 4.05569 4.09564 4.16508 4.38983 4.48747 4.57674 4.69436 4.72874 4.83169 4.88093 4.91226 4.97735 5.00067 5.07737 5.14323 5.15871 5.16763 5.20524 5.37090 5.47140 5.48675 5.54221 5.70637 5.72608 5.87267 6.16556 6.77183 6.82048 6.90010 7.39598 8.93644 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024983 B = 0.009924 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.474880 B = 2820.700312 C = 3474.665481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.187 3.813 3 H 0.030 0.970 4 C -0.486 4.486 5 H 0.031 0.969 6 C 0.010 3.990 7 N -0.953 5.953 8 Si 0.938 3.062 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.248 1.248 12 N -0.654 5.654 13 C 0.061 3.939 14 H 0.056 0.944 15 C -0.164 4.164 16 C -0.121 4.121 17 C -0.091 4.091 18 H 0.097 0.903 19 C -0.070 4.070 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.130 4.130 23 H 0.036 0.964 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.263 0.737 27 H 0.332 0.668 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 2.893 17.065 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.078 3.922 3 H 0.048 0.952 4 C -0.525 4.525 5 H 0.049 0.951 6 C -0.187 4.187 7 N -0.594 5.594 8 Si 0.763 3.237 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.172 1.172 12 N -0.283 5.283 13 C -0.050 4.050 14 H 0.074 0.926 15 C -0.204 4.204 16 C -0.158 4.158 17 C -0.110 4.110 18 H 0.115 0.885 19 C -0.088 4.088 20 C -0.163 4.163 21 C -0.181 4.181 22 C -0.168 4.168 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.150 0.850 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.378 2.994 16.708 17.030 hybrid contribution -0.859 0.655 -0.791 1.339 sum 0.519 3.649 15.917 16.338 Atomic orbital electron populations 1.22538 0.99249 1.00681 0.99779 1.19497 0.90455 0.93590 0.88660 0.95212 1.21129 1.41518 0.93878 0.95956 0.95095 1.25789 0.94931 1.02938 0.95012 1.70053 1.49213 1.37535 1.02606 0.85888 0.79592 0.80969 0.77230 1.19807 1.21538 1.17169 1.60445 1.57088 1.08508 1.02232 1.22805 0.96729 0.95261 0.90230 0.92552 1.23595 0.97162 1.00505 0.99091 1.22804 0.95191 0.97755 1.00064 1.22726 0.93756 0.98323 0.96157 0.88460 1.22052 0.93084 0.98399 0.95308 1.22988 0.95411 1.02307 0.95633 1.22872 0.96880 1.00658 0.97727 1.22667 0.96835 0.98973 0.98284 0.94479 0.92910 0.93569 0.92833 0.84989 0.88945 0.92096 0.90898 0.90212 0.90999 0.89382 0.91052 0.91044 0.91248 0.94624 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.58 9.16 71.98 0.66 -5.92 16 2 C 0.19 8.54 2.23 44.17 0.10 8.64 16 3 H 0.03 1.40 4.62 -2.38 -0.01 1.39 16 4 C -0.49 -27.74 9.19 25.60 0.24 -27.51 16 5 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 6 C 0.01 0.57 5.47 84.65 0.46 1.03 16 7 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 8 Si 0.94 45.13 26.99 68.60 1.85 46.98 16 9 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 11 H -0.25 -10.97 6.82 99.48 0.68 -10.29 16 12 N -0.65 -25.42 5.25 -470.61 -2.47 -27.90 16 13 C 0.06 1.91 3.62 45.44 0.16 2.08 16 14 H 0.06 1.90 7.47 -2.39 -0.02 1.89 16 15 C -0.16 -4.04 7.42 31.12 0.23 -3.81 16 16 C -0.12 -2.75 7.41 31.12 0.23 -2.52 16 17 C -0.09 -2.37 3.49 -10.26 -0.04 -2.40 16 18 H 0.10 2.24 7.95 -2.39 -0.02 2.22 16 19 C -0.07 -2.02 2.80 -10.26 -0.03 -2.05 16 20 C -0.13 -2.93 7.66 31.18 0.24 -2.69 16 21 C -0.14 -3.89 8.09 31.18 0.25 -3.64 16 22 C -0.13 -4.38 7.15 31.12 0.22 -4.16 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 1.80 7.51 -2.39 -0.02 1.78 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 27 H 0.33 12.37 7.86 -89.69 -0.71 11.66 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.55 7.77 -2.39 -0.02 1.53 16 30 H 0.07 1.78 7.90 -2.39 -0.02 1.76 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 2.33 7.95 -2.39 -0.02 2.31 16 33 H 0.09 1.79 7.96 -2.39 -0.02 1.77 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 2.16 8.10 -2.39 -0.02 2.14 16 Total: -1.00 -63.57 297.51 2.69 -60.88 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.28 Total: 23.15 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 2.73 Total: -42.96 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.17 Total: -88.06 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.85 Total: 46.98 kcal Total: -63.57 2.69 -60.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308652700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.795 kcal (2) G-P(sol) polarization free energy of solvation -63.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds