Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53000 * 109.46860 * 125.27738 * 3 2 1 5 5 H 1.09002 * 110.43701 * 56.08829 * 4 3 2 6 6 C 1.54893 * 110.48421 * 293.54584 * 4 3 2 7 7 C 1.54895 * 102.74734 * 203.37816 * 6 4 3 8 8 C 1.54265 * 104.19555 * 37.94392 * 7 6 4 9 9 C 1.53870 * 106.59938 * 336.38897 * 8 7 6 10 10 H 1.09008 * 110.03560 * 119.28468 * 9 8 7 11 11 N 1.46897 * 110.03436 * 240.71275 * 9 8 7 12 12 C 1.46897 * 111.00056 * 272.16764 * 11 9 8 13 13 H 1.09000 * 109.47250 * 324.99546 * 12 11 9 14 14 C 1.52996 * 109.47306 * 85.00073 * 12 11 9 15 15 C 1.50706 * 109.46911 * 204.99729 * 12 11 9 16 16 H 1.08000 * 120.00310 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99859 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00179 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00022 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47215 * 60.00120 * 19 17 15 21 21 H 1.48497 * 109.47247 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47217 * 300.00143 * 19 17 15 23 23 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 24 24 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 25 25 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 26 26 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 27 27 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 28 28 H 1.08998 * 110.75774 * 321.69445 * 6 4 3 29 29 H 1.09001 * 110.75533 * 85.06697 * 6 4 3 30 30 H 1.08997 * 110.48564 * 156.62419 * 7 6 4 31 31 H 1.09003 * 110.48654 * 279.26550 * 7 6 4 32 32 H 1.09002 * 110.03444 * 95.67333 * 8 7 6 33 33 H 1.09003 * 110.03311 * 217.05391 * 8 7 6 34 34 H 1.00906 * 110.99914 * 148.20677 * 11 9 8 35 35 H 1.09002 * 109.47449 * 179.97438 * 14 12 11 36 36 H 1.09005 * 109.46782 * 299.99990 * 14 12 11 37 37 H 1.09000 * 109.47397 * 59.99562 * 14 12 11 38 38 H 0.97004 * 120.00495 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0399 1.3302 1.1776 5 1 3.7084 0.4703 1.1361 6 6 2.2687 1.3530 2.5208 7 6 3.2994 1.9740 3.4961 8 6 4.0116 3.0545 2.6564 9 6 3.8466 2.6452 1.1823 10 1 3.3035 3.4183 0.6386 11 7 5.1640 2.4295 0.5694 12 6 5.7024 3.6826 0.0238 13 1 4.8861 4.2869 -0.3721 14 6 6.4180 4.4560 1.1331 15 6 6.6784 3.3710 -1.0813 16 1 6.8785 2.3447 -1.3517 17 6 7.3153 4.3961 -1.7481 18 7 7.0713 5.6459 -1.4193 19 14 8.5246 4.0099 -3.1184 20 1 7.8297 3.2591 -4.1947 21 1 9.0689 5.2766 -3.6699 22 1 9.6370 3.1868 -2.5795 23 1 -0.5401 0.9353 0.0045 24 1 -0.5400 -0.9353 -0.0045 25 1 1.8500 -0.9353 -0.0046 26 1 2.6173 1.4049 -0.9334 27 1 1.3589 2.1314 0.0945 28 1 1.3808 1.9807 2.4459 29 1 2.0036 0.3423 2.8311 30 1 2.7932 2.4259 4.3491 31 1 4.0116 1.2194 3.8299 32 1 3.5486 4.0263 2.8281 33 1 5.0691 3.0937 2.9177 34 1 5.1194 1.7150 -0.1417 35 1 6.8179 5.3857 0.7282 36 1 5.7120 4.6814 1.9325 37 1 7.2343 3.8518 1.5290 38 1 7.5196 6.3672 -1.8881 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308669125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = -4.009738 kcal Electronic energy + Delta-G solvation = -15695.640779 eV Core-core repulsion = 13344.353748 eV Total energy + Delta-G solvation = -2351.287030 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.68048 -35.18685 -34.10211 -32.01092 -29.77166 -28.38983 -26.39740 -24.93883 -24.06882 -20.42337 -19.98021 -19.52990 -18.99993 -16.42798 -15.46817 -15.10247 -14.75138 -14.31531 -13.81188 -13.48572 -13.23828 -12.85957 -12.60832 -12.07443 -11.43682 -11.25925 -11.16828 -10.97889 -10.87514 -10.76529 -10.58058 -10.49999 -10.36987 -10.15774 -10.02456 -9.88437 -9.61590 -9.17007 -8.74984 -8.42182 -7.21527 -5.99295 -4.05839 2.35349 3.32306 3.36753 3.39537 4.42239 4.82814 4.95513 5.01302 5.18289 5.29232 5.32496 5.54418 5.63333 5.81390 5.85637 5.88604 5.94139 5.99574 6.08660 6.21705 6.26497 6.37510 6.49129 6.66204 6.69613 6.72559 6.83475 6.87870 6.96498 7.21391 7.31369 7.60013 7.82016 7.96242 8.32754 8.47061 8.74937 9.06031 9.60031 11.06680 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.006951 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.027043 B = 4027.046808 C = 4686.236942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.137 4.137 3 C -0.092 4.092 4 C -0.089 4.089 5 H 0.081 0.919 6 C -0.113 4.113 7 C -0.122 4.122 8 C -0.115 4.115 9 C 0.089 3.911 10 H 0.037 0.963 11 N -0.682 5.682 12 C 0.212 3.788 13 H -0.001 1.001 14 C -0.127 4.127 15 C -0.518 4.518 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.895 3.105 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.329 0.671 35 H 0.077 0.923 36 H 0.010 0.990 37 H 0.029 0.971 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.988 -7.690 5.497 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.155 4.155 3 C -0.129 4.129 4 C -0.108 4.108 5 H 0.099 0.901 6 C -0.151 4.151 7 C -0.160 4.160 8 C -0.153 4.153 9 C -0.021 4.021 10 H 0.055 0.945 11 N -0.313 5.313 12 C 0.105 3.895 13 H 0.017 0.983 14 C -0.185 4.185 15 C -0.557 4.557 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.723 3.277 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.124 0.876 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.147 0.853 35 H 0.096 0.904 36 H 0.029 0.971 37 H 0.048 0.952 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.581 -7.418 6.030 13.534 hybrid contribution 0.132 0.005 -1.582 1.588 sum -9.448 -7.413 4.447 12.807 Atomic orbital electron populations 1.23752 0.95982 1.01368 1.03465 1.23004 0.95909 0.98696 0.97869 1.20874 0.98036 0.94856 0.99114 1.22166 0.95999 0.98978 0.93644 0.90090 1.22467 0.97665 0.99987 0.95013 1.22336 0.97689 0.98504 0.97430 1.22291 1.01582 0.96853 0.94585 1.22179 0.90212 0.94497 0.95253 0.94464 1.60881 1.21180 1.11914 1.37347 1.19143 0.93421 0.85308 0.91665 0.98312 1.21791 0.98391 1.01729 0.96574 1.21260 1.24932 0.92882 1.16621 0.92388 1.24914 0.96831 0.95005 0.97239 1.69892 1.43123 0.98524 1.41380 0.86608 0.81465 0.77470 0.82122 1.20388 1.21331 1.20226 0.88860 0.88990 0.87636 0.90727 0.91683 0.92015 0.92257 0.92624 0.91911 0.93075 0.90170 0.85315 0.90438 0.97095 0.95194 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.24 14.32 29.02 0.42 -1.83 16 2 C -0.14 -1.62 9.06 -36.02 -0.33 -1.94 16 3 C -0.09 -1.25 5.02 -27.88 -0.14 -1.39 16 4 C -0.09 -1.30 2.31 -88.96 -0.21 -1.51 16 5 H 0.08 1.22 7.96 -51.93 -0.41 0.80 16 6 C -0.11 -1.47 5.87 -24.73 -0.15 -1.61 16 7 C -0.12 -1.67 6.83 -25.07 -0.17 -1.84 16 8 C -0.11 -1.93 5.26 -25.62 -0.13 -2.07 16 9 C 0.09 1.61 2.82 -66.60 -0.19 1.42 16 10 H 0.04 0.74 7.13 -51.92 -0.37 0.37 16 11 N -0.68 -14.54 6.02 -99.78 -0.60 -15.14 16 12 C 0.21 5.41 2.60 -68.87 -0.18 5.24 16 13 H 0.00 -0.02 7.43 -51.93 -0.39 -0.41 16 14 C -0.13 -3.18 8.60 37.16 0.32 -2.86 16 15 C -0.52 -14.33 8.59 -34.44 -0.30 -14.63 16 16 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.71 11.32 55.43 0.63 -25.09 16 19 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.09 0.97 7.84 -52.49 -0.41 0.56 16 24 H 0.09 0.85 8.06 -52.49 -0.42 0.43 16 25 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 28 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.50 6.57 -51.93 -0.34 1.16 16 34 H 0.33 6.88 7.81 -39.29 -0.31 6.57 16 35 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 36 H 0.01 0.23 6.02 -51.93 -0.31 -0.08 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 298.28 15.07 4.49 4.49 Total: -1.00 -28.02 298.28 -8.24 -36.25 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.59 Total: 4.45 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -1.14 Total: -21.39 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.03 Total: -40.23 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.02 -8.24 -36.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308669125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.242 kcal (2) G-P(sol) polarization free energy of solvation -28.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds